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1

Biowep: a workflow enactment portal for bioinformatics applications

Paolo Romano, Ezio Bartocci, Guglielmo Bertolini, Flavio De Paoli, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.46 MB

english, 2007

2

The Subclass Approach for Mutational Spectrum Analysis: Application of the SEM Algorithm

Galina B. Glazko, Luciano Milanesi, Igor B. Rogozin

Journal:

Journal of Theoretical Biology

Year:

1998

Language:

english

File:

PDF, 297 KB

english, 1998

3

Grid Based Genome Wide Studies on Atrial Flutter

Andrea Calabria, Davide Di Pasquale, Matteo Gnocchi, Paolo Alessandro Cozzi, Alessandro Orro, Gabriele Antonio Trombetti, Luciano Milanesi

Journal:

Journal of Grid Computing

Year:

2010

Language:

english

File:

PDF, 817 KB

english, 2010

4

Identification of a U7snRNA homologue mapping to the human Xq27.1 region, between the DXS1232 and DXS119 loci

Marina Mostardini, Valentina Appierto, Rossana Pergolizzi, Ileana Zucchi, Steven Mumm, GianLuca DeBellis, Luciano Milanesi, Igor B. Rogozin, Ida Biunno

Journal:

Year:

1997

Language:

english

File:

PDF, 105 KB

english, 1997

5

Network-based analysis of omics with multi-objective optimization

Mosca, Ettore, Milanesi, Luciano

Journal:

Molecular BioSystems

Year:

2013

Language:

english

File:

PDF, 3.06 MB

english, 2013

6

Homology Modeling, Docking Studies and Molecular Dynamic Simulations Using Graphical Processing Unit Architecture to Probe the Type-11 Phosphodiesterase Catalytic Site: A Computational Approach for the Rational Design of Selective Inhibitors

Cichero, Elena, D'Ursi, Pasqualina, Moscatelli, Marco, Bruno, Olga, Orro, Alessandro, Rotolo, Chiara, Milanesi, Luciano, Fossa, Paola

Journal:

Chemical Biology & Drug Design

Year:

2013

Language:

english

File:

PDF, 3.85 MB

english, 2013

7

Gene structure prediction using information on homologous protein sequence

Rogozin, Igor B., Milanesi, Luciano, Kolchanov, Nikolay A.

Journal:

Year:

1996

Language:

english

File:

PDF, 779 KB

english, 1996

8

DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70

Chiappori, Federica, Fumian, Marco, Milanesi, Luciano, Merelli, Ivan, Dalby, Andrew R.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.94 MB

english, 2015

9

ChemInform Abstract: A New Synthesis of Chloroheterocycles via Metal—Halogen Exchange Between Trichloroacetyl Derivatives and Heteroaromatic Lithium and Grignard Reagents.

Carla Boga, Erminia Del Vecchio, Luciano Forlani, Lilia Milanesi, Paolo Edgardo Todesco

Journal:

Year:

2000

File:

PDF, 30 KB

2000

10

Strategies for comparing gene expression profiles from different microarray platforms: Application to a case–control experiment

Marco Severgnini, Silvio Bicciato, Eleonora Mangano, Francesca Scarlatti, Alessandra Mezzelani, Michela Mattioli, Riccardo Ghidoni, Clelia Peano, Raoul Bonnal, Federica Viti, Luciano Milanesi, Gianluc

Journal:

Analytical Biochemistry

Year:

2006

Language:

english

File:

PDF, 1.27 MB

english, 2006

11

Nuclear Receptors Database for predictive toxicity of EDC

Zelda Lazzati, Pasqualina D’Ursi, Alessandro Orro, Ezio Bolzacchini, Luciano Milanesi

Journal:

Journal of Biotechnology

Year:

2010

Language:

english

File:

PDF, 70 KB

english, 2010

12

Virtual screening on large scale grids

Nicolas Jacq, Vincent Breton, Hsin-Yen Chen, Li-Yung Ho, Martin Hofmann, Vinod Kasam, Hurng-Chun Lee, Yannick Legré, Simon C. Lin, Astrid Maaß, Emmanuel Medernach, Ivan Merelli, Luciano Milanesi, Giul

Journal:

Parallel Computing

Year:

2007

Language:

english

File:

PDF, 764 KB

english, 2007

13

A new synthesis of chloroheterocycles via metalhalogen exchange between trichloroacetyl derivatives and heteroaromatic lithium and Grignard reagents

Carla Boga, Erminia Del Vecchio, Luciano Forlani, Lilia Milanesi, Paolo Edgardo Todesco

Journal:

Journal of Organometallic Chemistry

Year:

1999

Language:

english

File:

PDF, 97 KB

english, 1999

14

Exploring the role of the phospholipid ligand in endothelial protein C receptor: A molecular dynamics study

Federica Chiappori, Ivan Merelli, Luciano Milanesi, Ermanna Rovida

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 670 KB

english, 2010

15

Structural thermal adaptation of β-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii

Federica Chiappori, Sandra Pucciarelli, Ivan Merelli, Patrizia Ballarini, Cristina Miceli, Luciano Milanesi

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.51 MB

english, 2012

16

Analysis of donor splice sites in different eukaryotic organisms

Igor B. Rogozin, Luciano Milanesi

Journal:

Journal of Molecular Evolution

Year:

1997

Language:

english

File:

PDF, 1.80 MB

english, 1997

17

10.1038/88395

Conti, Luciano, Sipione, Simonetta, Magrassi, Lorenzo, Bonfanti, Luca, Rigamonti, Dorotea, Pettirossi, Valentina, Peschanski, Marc, Haddad, Bassam, Pelicci, PierGiuseppe, Milanesi, Gabriele, Pelicci,

Journal:

Nature Neuroscience

Year:

2001

Language:

english

File:

PDF, 746 KB

english, 2001

18

Comparative analysis of calf and cow oocytes during in vitro maturation

F. Gandolfi, E. Milanesi, P. Pocar, A.M. Luciano, T.A.L. Brevini, F. Acocella, A. Lauria, D.T. Armstrong

Journal:

Molecular Reproduction and Development

Year:

1998

Language:

english

File:

PDF, 131 KB

english, 1998

19

Effect of different levels of intracellular cAMP on the in vitro maturation of cattle oocytes and their subsequent development following in vitro fertilization

A.M. Luciano, P. Pocar, E. Milanesi, S. Modina, D. Rieger, A. Lauria, F. Gandolfi

Journal:

Molecular Reproduction and Development

Year:

1999

Language:

english

File:

PDF, 46 KB

english, 1999

20

Bioinformatics of Genome Regulation and Structure II Volume 143 || Comparative Analysis of Electrostatic Patterns for Promoter and Nonpromoter DNA in E. Coli Genome

Kolchanov, Nikolay, Hofestaedt, Ralf, Milanesi, Luciano

Year:

2006

Language:

english

File:

PDF, 414 KB

english, 2006

21

Correlation assessment among clinical phenotypes, expression analysis and molecular modeling of 14 novel variations in the human galactose-1-phosphate uridylyltransferase gene

Manshu Tang, Angelo Facchiano, Rakesh Rachamadugu, Fernanda Calderon, Rong Mao, Luciano Milanesi, Anna Marabotti, Kent Lai

Journal:

Year:

2012

Language:

english

File:

PDF, 357 KB

english, 2012

22

Systems biology of the metabolic network regulated by the Akt pathway

Ettore Mosca, Matteo Barcella, Roberta Alfieri, Annamaria Bevilacqua, Gianfranco Canti, Luciano Milanesi

Journal:

Biotechnology Advances

Year:

2012

Language:

english

File:

PDF, 955 KB

english, 2012

23

Homology modeling in tandem with 3D-QSAR analyses: A computational approach to depict the agonist binding site of the human CB2 receptor

Elena Cichero, Alessia Ligresti, Marco Allarà, Vincenzo di Marzo, Zelda Lazzati, Pasqualina D’Ursi, Anna Marabotti, Luciano Milanesi, Andrea Spallarossa, Angelo Ranise, Paola Fossa

Journal:

European Journal of Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 5.09 MB

english, 2011

24

Molecular remodeling of potassium channels in fibroblasts from centenarians: A marker of longevity?

Isabella Zironi, Paolo Gaibani, Daniel Remondini, Stefano Salvioli, Serena Altilia, Michela Pierini, Giorgio Aicardi, Ettore Verondini, Luciano Milanesi, Ferdinando Bersani, Silvia Gravina, Igor B. Ro

Journal:

Mechanisms of Ageing and Development

Year:

2010

Language:

english

File:

PDF, 545 KB

english, 2010

25

Clinical significance of high-frequency, low-amplitude electrocardiographic signals and QT dispersion in patients operated on for tetralogy of fallot

Luciano Daliento, Francesca Caneve, Pietro Turrini, Gianfranco Buja, Andrea Nava, Ornella Milanesi, Giovanni Stellin, Giulio Rizzoli

Journal:

The American Journal of Cardiology

Year:

1995

Language:

english

File:

PDF, 1.30 MB

english, 1995

26

Trends in modeling Biomedical Complex Systems

Luciano Milanesi, Paolo Romano, Gastone Castellani, Daniel Remondini, Pietro Liò

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 365 KB

english, 2009

27

Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation

Roberta Alfieri, Matteo Barberis, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.01 MB

english, 2009

28

The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections

Ivan Merelli, Andrea Caprera, Alessandra Stella, Marcello Del Corvo, Luciano Milanesi, Barbara Lazzari

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 559 KB

english, 2009

29

In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study

Federica Chiappori, Pasqualina D'Ursi, Ivan Merelli, Luciano Milanesi, Ermanna Rovida

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 529 KB

english, 2009

30

Identification of functionally related genes using data mining and data integration: a breast cancer case study

Ettore Mosca, Gloria Bertoli, Eleonora Piscitelli, Laura Vilardo, Rolland A Reinbold, Ileana Zucchi, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 446 KB

english, 2009

31

The GENIUS Grid Portal and robot certificates: a new tool for e-Science

Roberto Barbera, Giacinto Donvito, Alberto Falzone, Giuseppe La Rocca, Luciano Milanesi, Giorgio Pietro Maggi, Saverio Vicario

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 575 KB

english, 2009

32

Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study

Federica Viti, Ivan Merelli, Mieke Timmermans, Michael den Bakker, Francesco Beltrame, Peter Riegman, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.87 MB

english, 2010

33

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society

Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 191 KB

english, 2005

34

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity

Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1005 KB

english, 2005

35

High performance workflow implementation for protein surface characterization using grid technology

Ivan Merelli, Giulia Morra, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1018 KB

english, 2005

36

Modelling the interaction of steroid receptors with endocrine disrupting chemicals

Pasqualina D'Ursi, Erika Salvi, Paola Fossa, Luciano Milanesi, Ermanna Rovida

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 756 KB

english, 2005

37

Web services and workflow management for biological resources

Paolo Romano, Domenico Marra, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 262 KB

english, 2005

38

ESTree db: a Tool for Peach Functional Genomics

Barbara Lazzari, Andrea Caprera, Alberto Vecchietti, Alessandra Stella, Luciano Milanesi, Carlo Pozzi

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 469 KB

english, 2005

39

A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure

Giuliano Armano, Gianmaria Mancosu, Luciano Milanesi, Alessandro Orro, Massimiliano Saba, Eloisa Vargiu

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 256 KB

english, 2005

40

SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics – exploring current scientific literature for emerging topics

Dietrich Rebholz-Schuhman, Graham Cameron, Dominic Clark, Erik van Mulligen, Jean-Louis Coatrieux, Eva Del Hoyo Barbolla, Fernando Martin-Sanchez, Luciano Milanesi, Ivan Porro, Francesco Beltrame, Ioa

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 248 KB

english, 2007

41

ESTuber db: an online database forTuber borchiiEST sequences

Barbara Lazzari, Andrea Caprera, Cristian Cosentino, Alessandra Stella, Luciano Milanesi, Angelo Viotti

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 606 KB

english, 2007

42

ProCMD: a database and 3D web resource for protein C mutants

Pasqualina D'Ursi, Francesca Marino, Andrea Caprera, Luciano Milanesi, Elena M Faioni, Ermanna Rovida

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 873 KB

english, 2007

43

Data handling strategies for high throughput pyrosequencers

Gabriele A Trombetti, Raoul JP Bonnal, Ermanno Rizzi, Gianluca De Bellis, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 615 KB

english, 2007

44

SNPLims: a data management system for genome wide association studies

Alessandro Orro, Guia Guffanti, Erika Salvi, Fabio Macciardi, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 668 KB

english, 2008

45

Ontology-based, Tissue MicroArray oriented, image centered tissue bank

Federica Viti, Ivan Merelli, Andrea Caprera, Barbara Lazzari, Alessandra Stella, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 602 KB

english, 2008

46

Version VI of the ESTree db: an improved tool for peach transcriptome analysis

Barbara Lazzari, Andrea Caprera, Alberto Vecchietti, Ivan Merelli, Francesca Barale, Luciano Milanesi, Alessandra Stella, Carlo Pozzi

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 363 KB

english, 2008

47

Reconstructing networks of pathways via significance analysis of their intersections

Mirko Francesconi, Daniel Remondini, Nicola Neretti, John M Sedivy, Leon N Cooper, Ettore Verondini, Luciano Milanesi, Gastone Castellani

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 2.45 MB

english, 2008

48

Ontology-oriented retrieval of putative microRNAs inVitis viniferavia GrapeMiRNA: a web database ofde novopredicted grape microRNAs

Barbara Lazzari, Andrea Caprera, Alessandro Cestaro, Ivan Merelli, Marcello Del Corvo, Paolo Fontana, Luciano Milanesi, Riccardo Velasco, Alessandra Stella

Journal:

BMC Plant Biology

Year:

2009

Language:

english

File:

PDF, 714 KB

english, 2009

49

A data integration approach for cell cycle analysis oriented to model simulation in systems biology

Roberta Alfieri, Ivan Merelli, Ettore Mosca, Luciano Milanesi

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 696 KB

english, 2007

50

A multilevel data integration resource for breast cancer study

Ettore Mosca, Roberta Alfieri, Ivan Merelli, Federica Viti, Andrea Calabria, Luciano Milanesi

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 2.99 MB

english, 2010

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