M Sáez-Rodríguez: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

Don't use scam websites

51

Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling

Aldridge, Bree B., Saez-Rodriguez, Julio, Muhlich, Jeremy L., Sorger, Peter K., Lauffenburger, Douglas A., Rao, Christopher

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 1.41 MB

english, 2009

52

SPIE Proceedings [SPIE Fifth European Workshop on Optical Fibre Sensors - Krakow, Poland (Sunday 19 May 2013)] Fifth European Workshop on Optical Fibre Sensors - Connectorisation of fibre Bragg grating sensors recorded in microstructured polymer optical fibre

Abang, A., Saez-Rodriguez, D., Nielsen, K., Bang, O., Webb, D. J., Jaroszewicz, Leszek R.

Year:

2013

Language:

english

File:

PDF, 972 KB

english, 2013

53

CySBGN: A Cytoscape plug-in to integrate SBGN maps

Emanuel Gonçalves, Martijn van Iersel, Julio Saez-Rodriguez

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 487 KB

english, 2013

54

[IEEE 2010 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010) - Buenos Aires (2010.08.31-2010.09.4)] 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology - Construction of signaling pathways and identification of drug effects on the liver cancer cell HepG2

Alexopoulos, L G, Melas, I N, Chairakaki, A D, Saez-Rodriguez, J, Mitsos, A

Year:

2010

Language:

english

File:

PDF, 833 KB

english, 2010

55

PIP3 Induces the Recycling of Receptor Tyrosine Kinases

Laketa, V., Zarbakhsh, S., Traynor-Kaplan, A., MacNamara, A., Subramanian, D., Putyrski, M., Mueller, R., Nadler, A., Mentel, M., Saez-Rodriguez, J., Pepperkok, R., Schultz, C.

Journal:

Science Signaling

Year:

2014

Language:

english

File:

PDF, 4.21 MB

english, 2014

56

Network based elucidation of drug response: from modulators to targets

Iorio, Francesco, Saez-Rodriguez, Julio, Bernardo, Diego di

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 218 KB

english, 2013

57

DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data

Pacini, C., Iorio, F., Goncalves, E., Iskar, M., Klabunde, T., Bork, P., Saez-Rodriguez, J.

Journal:

Year:

2013

Language:

english

File:

PDF, 171 KB

english, 2013

58

Photosensitivity mechanism of undoped poly(methyl methacrylate) under UV radiation at 325 nm and its spatial resolution limit

Sáez-Rodríguez, D., Nielsen, K., Bang, O., Webb, D. J.

Journal:

Year:

2014

Language:

english

File:

PDF, 648 KB

english, 2014

59

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics

Egea, Jose A, Henriques, David, Cokelaer, Thomas, Villaverde, Alejandro F, MacNamara, Aidan, Danciu, Diana-Patricia, Banga, Julio R, Saez-Rodriguez, Julio

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

60

[Advances in Intelligent Systems and Computing] 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014) Volume 294 ||

Saez-Rodriguez, Julio, Rocha, Miguel P., Fdez-Riverola, Florentino, De Paz Santana, Juan F.

Year:

2014

Language:

english

File:

PDF, 16.44 MB

english, 2014

61

A Rapidly Reversible Chemical Dimerizer System to Study Lipid Signaling in Living Cells

Feng, Suihan, Laketa, Vibor, Stein, Frank, Rutkowska, Anna, MacNamara, Aidan, Depner, Sofia, Klingmüller, Ursula, Saez-Rodriguez, Julio, Schultz, Carsten

Journal:

Angewandte Chemie International Edition

Year:

2014

Language:

english

File:

PDF, 1.00 MB

english, 2014

62

[Advances in Intelligent Systems and Computing] 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014) Volume 294 || Improving miRNA Classification Using an Exhaustive Set of Features

Saez-Rodriguez, Julio, Rocha, Miguel P., Fdez-Riverola, Florentino, De Paz Santana, Juan F.

Year:

2014

Language:

english

File:

PDF, 223 KB

english, 2014

63

A model integration approach linking signalling and gene-regulatory logic with kinetic metabolic models

Ryll, A., Bucher, J., Bonin, A., Bongard, S., Gonçalves, E., Saez-Rodriguez, J., Niklas, J., Klamt, S.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

64

Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models

Gonçalves, Emanuel, Bucher, Joachim, Ryll, Anke, Niklas, Jens, Mauch, Klaus, Klamt, Steffen, Rocha, Miguel, Saez-Rodriguez, Julio

Journal:

Molecular BioSystems

Year:

2013

Language:

english

File:

PDF, 1.71 MB

english, 2013

65

Modular analysis of signal transduction networks - How engineering tools can be applied to the analysis of cellular machinery

Saez-Rodriguez, J., Kremling, A., Conzelmann, H., Bettenbrock, K., Gilles, E.D.

Journal:

IEEE Control Systems Magazine

Year:

2004

Language:

english

File:

PDF, 1.27 MB

english, 2004

66

Cancer develops, progresses and responds to therapies through restricted perturbation of the protein–protein interaction network

Serra-Musach, Jordi, Aguilar, Helena, Iorio, Francesco, Comellas, Francesc, Berenguer, Antoni, Brunet, Joan, Saez-Rodriguez, Julio, Pujana, Miguel Angel

Journal:

Integrative Biology

Year:

2012

Language:

english

File:

PDF, 3.33 MB

english, 2012

67

Anticipatory Anxiety of an Imminent Economic Collapse

Saez-Rodriguez, Alberto, Demin, Alexey A.

Journal:

Journal of Aggression Maltreatment & Trauma

Year:

2012

Language:

english

File:

PDF, 150 KB

english, 2012

68

[Advances in Intelligent Systems and Computing] 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014) Volume 294 || A Method to Calibrate Metabolic Network Models with Experimental Datasets

Saez-Rodriguez, Julio, Rocha, Miguel P., Fdez-Riverola, Florentino, De Paz Santana, Juan F.

Year:

2014

Language:

english

File:

PDF, 242 KB

english, 2014

69

[IEEE 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Minneapolis, MN (2009.09.3-2009.09.6)] 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society - A multipathway phosphoproteomic signaling network model of idiosyncratic drug- and inflammatory cytokine-induced toxicity in human hepatocytes

Cosgrove, B.D., Alexopoulos, L.G., Saez-Rodriguez, J., Griffith, L.G., Lauffenburger, D.A.

Year:

2009

Language:

english

File:

PDF, 728 KB

english, 2009

70

[Advances in Intelligent Systems and Computing] 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014) Volume 294 || Evaluating Pathway Enumeration Algorithms in Metabolic Engineering Case Studies

Saez-Rodriguez, Julio, Rocha, Miguel P., Fdez-Riverola, Florentino, De Paz Santana, Juan F.

Year:

2014

Language:

english

File:

PDF, 241 KB

english, 2014

71

Mapping the human phosphatome on growth pathways

Sacco, Francesca, Gherardini, Pier Federico, Paoluzi, Serena, Saez-Rodriguez, Julio, Helmer-Citterich, Manuela, Ragnini-Wilson, Antonella, Castagnoli, Luisa, Cesareni, Gianni

Journal:

Molecular Systems Biology

Year:

2012

Language:

english

File:

PDF, 722 KB

english, 2012

72

[IEEE 12th European Quantum Electronics Conference CLEO EUROPE/EQEC - Munich, Germany (2011.05.22-2011.05.26)] 2011 Conference on Lasers and Electro-Optics Europe and 12th European Quantum Electronics Conference (CLEO EUROPE/EQEC) - Fiber laser with cladding-mode feedback based on intracavity long period grating

Saez-Rodriguez, D., Cruz, J.L., Diez, A., Andres, M.V.

Year:

2011

Language:

english

File:

PDF, 270 KB

english, 2011

73

A Rapidly Reversible Chemical Dimerizer System to Study Lipid Signaling in Living Cells

Feng, Suihan, Laketa, Vibor, Stein, Frank, Rutkowska, Anna, MacNamara, Aidan, Depner, Sofia, Klingmüller, Ursula, Saez-Rodriguez, Julio, Schultz, Carsten

Journal:

Angewandte Chemie

Year:

2014

Language:

english

File:

PDF, 1021 KB

english, 2014

74

Dynamic transcription factor activity and networks during ErbB2 breast oncogenesis and targeted therapy

Weiss, M. S., Peñalver Bernabé, B., Shin, S., Asztalos, S., Dubbury, S. J., Mui, M. D., Bellis, A. D., Bluver, D., Tonetti, D. A., Saez-Rodriguez, J., Broadbelt, L. J., Jeruss, J. S., Shea, L. D.

Journal:

Integrative Biology

Year:

2014

Language:

english

File:

PDF, 3.96 MB

english, 2014

75

Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast

Vaga, S., Bernardo-Faura, M., Cokelaer, T., Maiolica, A., Barnes, C. A., Gillet, L. C., Hegemann, B., van Drogen, F., Sharifian, H., Klipp, E., Peter, M., Saez-Rodriguez, J., Aebersold, R.

Journal:

Molecular Systems Biology

Year:

2014

Language:

english

File:

PDF, 3.43 MB

english, 2014

76

Cooperative development of logical modelling standards and tools with CoLoMoTo

Naldi, A., Monteiro, P. T., Mussel, C., Kestler, H. A., Thieffry, D., Xenarios, I., Saez-Rodriguez, J., Helikar, T., Chaouiya, C.

Journal:

Year:

2015

Language:

english

File:

PDF, 110 KB

english, 2015

77

Dynamics of Proximal Signaling Events after TCR/CD8-Mediated Induction of Proliferation or Apoptosis in Mature CD8+ T Cells

Wang, X., Simeoni, L., Lindquist, J. A., Saez-Rodriguez, J., Ambach, A., Gilles, E. D., Kliche, S., Schraven, B.

Journal:

The Journal of Immunology

Year:

2008

Language:

english

File:

PDF, 562 KB

english, 2008

78

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

Guziolowski, C., Videla, S., Eduati, F., Thiele, S., Cokelaer, T., Siegel, A., Saez-Rodriguez, J.

Journal:

Year:

2013

Language:

english

File:

PDF, 609 KB

english, 2013

79

Flexible informatics for linking experimental data to mathematical models via DataRail

Saez-Rodriguez, J., Goldsipe, A., Muhlich, J., Alexopoulos, L. G., Millard, B., Lauffenburger, D. A., Sorger, P. K.

Journal:

Year:

2008

Language:

english

File:

PDF, 830 KB

english, 2008

80

Fast randomization of large genomic datasets while preserving alteration counts

Gobbi, A., Iorio, F., Dawson, K. J., Wedge, D. C., Tamborero, D., Alexandrov, L. B., Lopez-Bigas, N., Garnett, M. J., Jurman, G., Saez-Rodriguez, J.

Journal:

Year:

2014

Language:

english

File:

PDF, 419 KB

english, 2014

81

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology

Villaverde, Alejandro F, Henriques, David, Smallbone, Kieran, Bongard, Sophia, Schmid, Joachim, Cicin-Sain, Damjan, Crombach, Anton, Saez-Rodriguez, Julio, Mauch, Klaus, Balsa-Canto, Eva, Mendes, Pedr

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 942 KB

english, 2015

82

[Advances in Intelligent Systems and Computing] 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014) Volume 294 || Bringing Named Entity Recognition on Drupal Content Management System

Saez-Rodriguez, Julio, Rocha, Miguel P., Fdez-Riverola, Florentino, De Paz Santana, Juan F.

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

83

Identification of drug-specific pathways based on gene expression data: application to drug induced lung injury

Melas, Ioannis N., Sakellaropoulos, Theodore, Iorio, Francesco, Alexopoulos, Leonidas G., Loh, Wei-Yin, Lauffenburger, Douglas A., Saez-Rodriguez, Julio, Bai, Jane P. F.

Journal:

Integrative Biology

Year:

2015

Language:

english

File:

PDF, 4.07 MB

english, 2015

84

SPIE Proceedings [SPIE SPIE Photonics Europe - Brussels, Belgium (Monday 14 April 2014)] Micro-structured and Specialty Optical Fibres III - Investigations on birefringence effects in polymer optical fiber Bragg gratings

Kalli, Kyriacos, Mendez, Alexis, Hu, X., Sáez-Rodríguez, D., Bang, O., Webb, D. J., Caucheteur, C.

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

85

SPIE Proceedings [SPIE OFS2014 23rd International Conference on Optical Fiber Sensors - Santander, Spain (Monday 2 June 2014)] 23rd International Conference on Optical Fibre Sensors - Interferometric microstructured polymer optical fiber ultrasound sensor for optoacoustic endoscopic imaging in biomedical applications

López-Higuera, José M., Jones, Julian D. C., López-Amo, Manuel, Santos, José L., Gallego, Daniel, Sáez-Rodríguez, David, Webb, David, Bang, Ole, Lamela, Horacio

Year:

2014

Language:

english

File:

PDF, 376 KB

english, 2014

86

[Advances in Intelligent Systems and Computing] 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014) Volume 294 || Timed and Probabilistic Model Checking over Phylogenetic Trees

Saez-Rodriguez, Julio, Rocha, Miguel P., Fdez-Riverola, Florentino, De Paz Santana, Juan F.

Year:

2014

Language:

english

File:

PDF, 237 KB

english, 2014

87

A single-cell model of PIP3 dynamics using chemical dimerization

MacNamara, Aidan, Stein, Frank, Feng, Suihan, Schultz, Carsten, Saez-Rodriguez, Julio

Journal:

Bioorganic & Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 1.85 MB

english, 2015

88

Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules

Saez-Rodriguez, J., Gayer, S., Ginkel, M., Gilles, E. D.

Journal:

Year:

2008

Language:

english

File:

PDF, 853 KB

english, 2008

89

State–time spectrum of signal transduction logic models

MacNamara, Aidan, Terfve, Camille, Henriques, David, Bernabé, Beatriz Peñalver, Saez-Rodriguez, Julio

Journal:

Physical Biology

Year:

2012

Language:

english

File:

PDF, 1.04 MB

english, 2012

90

Using chemical reaction network theory to discard a kinetic mechanism hypothesis

Conradi, C., Saez-Rodriguez, J., Gilles, E.-D., Raisch, J.

Journal:

IEE Proceedings - Systems Biology

Year:

2005

Language:

english

File:

PDF, 141 KB

english, 2005

91

Crowdsourcing Network Inference: The DREAM Predictive Signaling Network Challenge

Prill, R. J., Saez-Rodriguez, J., Alexopoulos, L. G., Sorger, P. K., Stolovitzky, G.

Journal:

Science Signaling

Year:

2011

Language:

english

File:

PDF, 1.31 MB

english, 2011

92

Identifying Drug Effects via Pathway Alterations using an Integer Linear Programming Optimization Formulation on Phosphoproteomic Data

Mitsos, Alexander, Melas, Ioannis N., Siminelakis, Paraskeuas, Chairakaki, Aikaterini D., Saez-Rodriguez, Julio, Alexopoulos, Leonidas G., Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 1.43 MB

english, 2009

93

A Logical Model Provides Insights into T Cell Receptor Signaling

Saez-Rodriguez, Julio, Simeoni, Luca, Lindquist, Jonathan A., Hemenway, Rebecca, Bommhardt, Ursula, Arndt, Boerge, Haus, Utz-Uwe, Weismantel, Robert, Gilles, Ernst D., Klamt, Steffen, Schraven, Burkha

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 751 KB

english, 2007

94

Training Signaling Pathway Maps to Biochemical Data with Constrained Fuzzy Logic: Quantitative Analysis of Liver Cell Responses to Inflammatory Stimuli

Morris, Melody K., Saez-Rodriguez, Julio, Clarke, David C., Sorger, Peter K., Lauffenburger, Douglas A., Beard, Daniel A.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 2.90 MB

english, 2011

95

BioServices: a common Python package to access biological Web Services programmatically

Cokelaer, T., Pultz, D., Harder, L. M., Serra-Musach, J., Saez-Rodriguez, J.

Journal:

Year:

2013

Language:

english

File:

PDF, 176 KB

english, 2013

96

Integrating literature-constrained and data-driven inference of signalling networks

Eduati, F., De Las Rivas, J., Di Camillo, B., Toffolo, G., Saez-Rodriguez, J.

Journal:

Year:

2012

Language:

english

File:

PDF, 599 KB

english, 2012

97

The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data

Samaga, Regina, Saez-Rodriguez, Julio, Alexopoulos, Leonidas G., Sorger, Peter K., Klamt, Steffen, Asthagiri, Anand R.

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 2.19 MB

english, 2009

98

Empirical inference of circuitry and plasticity in a kinase signaling network

Wilkes, Edmund H., Terfve, Camille, Gribben, John G., Saez-Rodriguez, Julio, Cutillas, Pedro Rodriguez

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.92 MB

english, 2015

99

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

Guziolowski, C., Videla, S., Eduati, F., Thiele, S., Cokelaer, T., Siegel, A., Saez-Rodriguez, J.

Journal:

Year:

2014

Language:

english

File:

PDF, 38 KB

english, 2014

100

Integrative approaches for signalling and metabolic networks

Hatzimanikatis, Vassily, Saez-Rodriguez, Julio

Journal:

Integrative Biology

Year:

2015

Language:

english

File:

PDF, 1.28 MB

english, 2015

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Z-Library Since 2009 support@z-lib.do

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски