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51

Emergence of HIV-1 Drug Resistance During Antiretroviral Treatment

Libin Rong, Zhilan Feng, Alan S. Perelson

Journal:

Bulletin of Mathematical Biology

Year:

2007

Language:

english

File:

PDF, 691 KB

english, 2007

52

A simple idiotypic network model with complex dynamics

R.J. De Boer, I.G. Kevrekidis, A.S. Perelson

Journal:

Chemical Engineering Science

Year:

1990

Language:

english

File:

PDF, 719 KB

english, 1990

53

Modeling amantadine treatment of influenza A virus in vitro

Catherine A.A. Beauchemin, James J. McSharry, George L. Drusano, Jack T. Nguyen, Gregory T. Went, Ruy M. Ribeiro, Alan S. Perelson

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 602 KB

english, 2008

54

Modeling HIV persistence, the latent reservoir, and viral blips

Libin Rong, Alan S. Perelson

Journal:

Journal of Theoretical Biology

Year:

2009

Language:

english

File:

PDF, 773 KB

english, 2009

55

Determining thymic output quantitatively: using models to interpret experimental T-cell receptor excision circle (TREC) data

Ruy M. Ribeiro, Alan S. Perelson

Journal:

Immunological Reviews

Year:

2007

Language:

english

File:

PDF, 450 KB

english, 2007

56

Network Thermodynamics

OSTER, GEORGE, PERELSON, ALAN, KATCHALSKY, AHARON

Journal:

Year:

1971

File:

PDF, 674 KB

1971

57

Modelling how ribavirin improves interferon response rates in hepatitis C virus infection

Dixit, Narendra M., Layden-Almer, Jennifer E., Layden, Thomas J., Perelson, Alan S.

Journal:

Year:

2004

Language:

english

File:

PDF, 245 KB

english, 2004

58

MODELLING VIRAL AND IMMUNE SYSTEM DYNAMICS

Perelson, Alan S.

Journal:

Nature Reviews Immunology

Year:

2002

Language:

english

File:

PDF, 1.16 MB

english, 2002

59

Understanding the mechanisms and limitations of immune control of HIV

Miles P. Davenport, Ruy M. Ribeiro, Lei Zhang, David P. Wilson, Alan S. Perelson

Journal:

Immunological Reviews

Year:

2007

Language:

english

File:

PDF, 508 KB

english, 2007

60

Hepatitis C viral kinetics with the nucleoside polymerase inhibitor mericitabine (RG7128)

Jeremie Guedj, Harel Dahari, Emi Shudo, Patrick Smith, Alan S. Perelson

Journal:

Year:

2012

Language:

english

File:

PDF, 917 KB

english, 2012

61

A Cayley tree immune network model with antibody dynamics

Russell W. Anderson, Avidan U. Neumann, Alan S. Perelson

Journal:

Bulletin of Mathematical Biology

Year:

1993

Language:

english

File:

PDF, 2.34 MB

english, 1993

62

Influence of delayed viral production on viral dynamics in HIV-1 infected patients

John E. Mittler, Bernhard Sulzer, Avidan U. Neumann, Alan S. Perelson

Journal:

Mathematical Biosciences

Year:

1998

Language:

english

File:

PDF, 204 KB

english, 1998

63

Analysis of Hepatitis C Virus Infection Models with Hepatocyte Homeostasis

Reluga, Timothy C., Dahari, Harel, Perelson, Alan S.

Journal:

SIAM Journal on Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 555 KB

english, 2009

64

Evolutionary Walks on Rugged Landscapes

Macken, Catherine A., Hagan, Patrick S., Perelson, Alan S.

Journal:

SIAM Journal on Applied Mathematics

Year:

1991

Language:

english

File:

PDF, 2.73 MB

english, 1991

65

A Paradoxical Instability Caused by Relatively Short-Range Inhibition

Segel, Lee A., Perelson, Alan S.

Journal:

SIAM Journal on Applied Mathematics

Year:

1990

Language:

english

File:

PDF, 1.75 MB

english, 1990

66

Kinetic Analysis of Adsorption Processes

Brendel, Volker, Perelson, Alan S.

Journal:

SIAM Journal on Applied Mathematics

Year:

1987

Language:

english

File:

PDF, 1.27 MB

english, 1987

67

A Mathematical Model of Hepatitis C Virus Dynamics in Patients With High Baseline Viral Loads or Advanced Liver Disease

Harel Dahari, Jennifer E. Layden–Almer, Eric Kallwitz, Ruy M. Ribeiro, Scott J. Cotler, Thomas J. Layden, Alan S. Perelson

Journal:

Gastroenterology

Year:

2009

Language:

english

File:

PDF, 644 KB

english, 2009

68

Adaptive Dynamic Networks as Models for the Immune System and Autocatalytic Sets

J. DOYNE FARMER, STUART A. KAUFFMAN, NORMAN H. PACKARD, ALAN S. PERELSON

Journal:

Annals of the New York Academy of Sciences

Year:

1987

Language:

english

File:

PDF, 796 KB

english, 1987

69

Influence of follicular dendritic cells on HIV dynamics

Hlavacek, W. S., Stilianakis, N. I., Perelson, A. S.

Journal:

Philosophical Transactions Biological Sciences

Year:

2000

Language:

english

File:

PDF, 408 KB

english, 2000

70

Towards multiscale modeling of influenza infection

Murillo, Lisa N., Murillo, Michael S., Perelson, Alan S.

Journal:

Journal of Theoretical Biology

Year:

2013

Language:

english

File:

PDF, 1.07 MB

english, 2013

71

Drug Concentration Heterogeneity Facilitates the Evolution of Drug Resistance

Thomas B. Kepler and Alan S. Perelson

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.11 MB

english, 1998

72

How Diverse should the Immune System be?

Rob J. De Boer and Alan S. Perelson

Journal:

Proceedings Biological Sciences

Year:

1993

Language:

english

File:

PDF, 798 KB

english, 1993

73

A Paradoxical Instability Caused by Relatively Short-Range Inhibition

Lee A. Segel and Alan S. Perelson

Journal:

SIAM Journal on Applied Mathematics

Year:

1990

Language:

english

File:

PDF, 1.23 MB

english, 1990

74

Kinetic Analysis of Adsorption Processes

Volker Brendel and Alan S. Perelson

Journal:

SIAM Journal on Applied Mathematics

Year:

1987

Language:

english

File:

PDF, 1.34 MB

english, 1987

75

Mathematical Analysis of Age-Structured HIV-1 Dynamics with Combination Antiretroviral Therapy

Libin Rong, Zhilan Feng and Alan S. Perelson

Journal:

SIAM Journal on Applied Mathematics

Year:

2007

Language:

english

File:

PDF, 2.67 MB

english, 2007

76

Mathematical Analysis of HIV-I: Dynamics in Vivo

Alan S. Perelson and Patrick W. Nelson

Journal:

Year:

1999

Language:

english

File:

PDF, 2.74 MB

english, 1999

77

Estimating Average Cellular Turnover from 5-Bromo-2'-Deoxyuridine (BrdU) Measurements

Rob J. De Boer, Hiroshi Mohri, David D. Ho and Alan S. Perelson

Journal:

Proceedings Biological Sciences

Year:

2003

Language:

english

File:

PDF, 1.33 MB

english, 2003

78

Mathematical Analysis of Age‐Structured HIV‐1 Dynamics with Combination Antiretroviral Therapy

Rong, Libin, Feng, Zhilan, Perelson, Alan S.

Journal:

SIAM Journal on Applied Mathematics

Year:

2007

Language:

english

File:

PDF, 643 KB

english, 2007

79

Estimating average cellular turnover from 5-bromo-2'-deoxyuridine (BrdU) measurements

De Boer, R. J., Mohri, H., Ho, D. D., Perelson, A. S.

Journal:

Proceedings Biological Sciences

Year:

2003

Language:

english

File:

PDF, 209 KB

english, 2003

80

In a Subset of Subjects on Highly Active Antiretroviral Therapy, Human Immunodeficiency Virus Type 1 RNA in Plasma Decays from 50 to

Di Mascio, M., Dornadula, G., Zhang, H., Sullivan, J., Xu, Y., Kulkosky, J., Pomerantz, R. J., Perelson, A. S.

Journal:

Journal of Virology

Year:

2003

Language:

english

File:

PDF, 172 KB

english, 2003

81

Modeling Latently Infected Cell Activation: Viral and Latent Reservoir Persistence, and Viral Blips in HIV-infected Patients on Potent Therapy

Rong, Libin, Perelson, Alan S., Antia, Rustom

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 1.81 MB

english, 2009

82

Modeling Within-Host Dynamics of Influenza Virus Infection Including Immune Responses

Pawelek, Kasia A., Huynh, Giao T., Quinlivan, Michelle, Cullinane, Ann, Rong, Libin, Perelson, Alan S., Antia, Rustom

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

83

Searching for Diverse, Cooperative Populations with Genetic Algorithms

Smith, Robert E., Forrest, Stephanie, Perelson, Alan S.

Journal:

Evolutionary Computation

Year:

1993

Language:

english

File:

PDF, 1.37 MB

english, 1993

84

Analysis of Hepatitis C Virus Infection Models with Hepatocyte Homeostasis

Timothy C. Reluga, Harel Dahari and Alan S. Perelson

Journal:

SIAM Journal on Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1.96 MB

english, 2009

85

Modeling the Effects of Vaccination on Chronically Infected HIV-Positive Patients

Jones, Laura E., Perelson, Alan S.

Journal:

JAIDS Journal of Acquired Immune Deficiency Syndromes

Year:

2002

File:

PDF, 5.58 MB

2002

86

Modeling Long-Term HIV Dynamics and Antiretroviral Response

Wu, Hulin, Huang, Yangxin, Acosta, Edward P, Rosenkranz, Susan L, Kuritzkes, Daniel R, Eron, Joseph J, Perelson, Alan S, Gerber, John G

Journal:

JAIDS Journal of Acquired Immune Deficiency Syndromes

Year:

2005

Language:

english

File:

PDF, 378 KB

english, 2005

87

Optimization of Influenza Vaccine Selection

Wu, Joseph T., Wein, Lawrence M., Perelson, Alan S.

Journal:

Operations Research

Year:

2005

Language:

english

File:

PDF, 709 KB

english, 2005

88

A pharmacokinetic/viral kinetic model to evaluate the treatment effectiveness of danoprevir against chronic HCV

Canini, Laetitia, Chatterjee, Anushree, Guedj, Jeremie, Lemenuel-Diot, Annabelle, Brennan, Barbara, Smith, Patrick F, Perelson, Alan S

Journal:

Antiviral Therapy

Year:

2014

Language:

english

File:

PDF, 395 KB

english, 2014

89

Early HIV Infection Predictions: Role of Viral Replication Errors

Conway, Jessica M., Perelson, Alan S.

Journal:

SIAM Journal on Applied Mathematics

Year:

2018

Language:

english

File:

PDF, 721 KB

english, 2018

90

The Role of Infected Cell Proliferation in the Clearance of Acute HBV Infection in Humans

Goyal, Ashish, Ribeiro, Ruy, Perelson, Alan

Journal:

Year:

2017

Language:

english

File:

PDF, 873 KB

english, 2017

91

Introduction to modeling viral infections and immunity

Perelson, Alan S., Ribeiro, Ruy M.

Journal:

Immunological Reviews

Year:

2018

Language:

english

File:

PDF, 395 KB

english, 2018

92

Some design principles for immune system recognition

Alan S. Perelson, Frederik W. Wiegel

Journal:

Year:

1999

Language:

english

File:

PDF, 144 KB

english, 1999

93

The complexity of complexes in signal transduction

William S. Hlavacek, James R. Faeder, Michael L. Blinov, Alan S. Perelson, Byron Goldstein

Journal:

Biotechnology and Bioengineering

Year:

2003

Language:

english

File:

PDF, 339 KB

english, 2003

94

On the application of network theory to nonisothermal systems

Alan S. Perelson, George F. Oster

Journal:

International Journal of Circuit Theory and Applications

Year:

1976

Language:

english

File:

PDF, 319 KB

english, 1976

95

Impact of thymectomy on the peripheral T cell pool in rhesus macaques before and after infection with simian immunodeficiency virus

Sarah Tuttleton Arron, Ruy M. Ribeiro, Agegnehu Gettie, Rudolph Bohm, James Blanchard, Jian Yu, Alan S. Perelson, David D. Ho, Linqi Zhang

Journal:

European Journal of Immunology

Year:

2005

Language:

english

File:

PDF, 393 KB

english, 2005

96

The effects of thymic selection on the range of T cell cross-reactivity

Dennis L. Chao, Miles P. Davenport, Stephanie Forrest, Alan S. Perelson

Journal:

European Journal of Immunology

Year:

2005

Language:

english

File:

PDF, 242 KB

english, 2005

97

New kinetic models for the hepatitis C virus

Alan S. Perelson, Eva Herrmann, Florence Micol, Stefan Zeuzem

Journal:

Year:

2005

Language:

english

File:

PDF, 135 KB

english, 2005

98

Pharmacodynamics of PEG-IFN α differentiate HIV/HCV coinfected sustained virological responders from nonresponders

Andrew H. Talal, Ruy M. Ribeiro, Kimberly A. Powers, Michael Grace, Constance Cullen, Musaddeq Hussain, Marianthi Markatou, Alan S. Perelson

Journal:

Year:

2006

Language:

english

File:

PDF, 605 KB

english, 2006

99

Triphasic decline of hepatitis C virus RNA during antiviral therapy

Harel Dahari, Ruy M. Ribeiro, Alan S. Perelson

Journal:

Year:

2007

Language:

english

File:

PDF, 237 KB

english, 2007

100

Hepatitis C virus kinetics in chimeric mice during antiviral therapy

Harel Dahari, Alan S. Perelson

Journal:

Year:

2007

Language:

english

File:

PDF, 63 KB

english, 2007