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1

Optimizing a Multicolor Immunophenotyping Assay

Mahnke, Yolanda D., Roederer, Mario

Journal:

Clinics in Laboratory Medicine

Year:

2007

Language:

english

File:

PDF, 1.19 MB

english, 2007

2

Innate and adaptive immune traits are differentially affected by genetic and environmental factors

Mangino, Massimo, Roederer, Mario, Beddall, Margaret H., Nestle, Frank O., Spector, Tim D.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 734 KB

english, 2017

3

Probability binning comparison: a metric for quantitating multivariate distribution differences

Mario Roederer, Wayne Moore, Adam Treister, Richard R. Hardy, Leonore A. Herzenberg

Journal:

Cytometry Part A

Year:

2001

Language:

english

File:

PDF, 611 KB

english, 2001

4

Spectral compensation for flow cytometry: Visualization artifacts, limitations, and caveats

Journal:

Cytometry Part A

Year:

2001

Language:

english

File:

PDF, 872 KB

english, 2001

5

Measuring containment of viable infectious cell sorting in high-velocity cell sorters

Stephen P. Perfetto, David R. Ambrozak, Richard A. Koup, Mario Roederer

Journal:

Cytometry Part A

Year:

2003

Language:

english

File:

PDF, 1.63 MB

english, 2003

6

Gating-ML: XML-based gating descriptions in flow cytometry

Josef Spidlen, Robert C. Leif, Wayne Moore, Mario Roederer, Ryan R. Brinkman

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 285 KB

english, 2008

7

Phenotype and function of human T lymphocyte subsets: Consensus and issues

Victor Appay, Rene A. W. van Lier, Federica Sallusto, Mario Roederer

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 327 KB

english, 2008

8

Data analysis in flow cytometry: The future just started

Enrico Lugli, Mario Roederer, Andrea Cossarizza

Journal:

Cytometry Part A

Year:

2010

Language:

english

File:

PDF, 250 KB

english, 2010

9

OMIP-002: Phenotypic analysis of specific human CD8+ T-cells using peptide-MHC class I multimers for any of four epitopes

Pratip K. Chattopadhyay, Mario Roederer, David A. Price

Journal:

Cytometry Part A

Year:

2010

Language:

english

File:

PDF, 198 KB

english, 2010

10

OMIP-001: Quality and phenotype of Ag-responsive human T-cells

Yolanda D. Mahnke, Mario Roederer

Journal:

Cytometry Part A

Year:

2010

Language:

english

File:

PDF, 158 KB

english, 2010

11

OMIPs—Orchestrating multiplexity in polychromatic science

Mario Roederer, Attila Tárnok

Journal:

Cytometry Part A

Year:

2010

Language:

english

File:

PDF, 74 KB

english, 2010

12

Quality assurance for polychromatic flow cytometry

Perfetto, Stephen P, Ambrozak, David, Nguyen, Richard, Chattopadhyay, Pratip, Roederer, Mario

Journal:

Nature Protocols

Year:

2006

Language:

english

File:

PDF, 286 KB

english, 2006

13

Brilliant violet fluorophores: A new class of ultrabright fluorescent compounds for immunofluorescence experiments

Pratip K. Chattopadhyay, Brent Gaylord, Adrian Palmer, Nan Jiang, Mary A. Raven, Geoff Lewis, Morgan A. Reuter, A.K.M. Nur-ur Rahman, David A. Price, Michael R. Betts, Mario Roederer

Journal:

Cytometry Part A

Year:

2012

Language:

english

File:

PDF, 2.52 MB

english, 2012

14

A practical approach to multicolor flow cytometry for immunophenotyping

Nicole Baumgarth, Mario Roederer

Journal:

Journal of Immunological Methods

Year:

2000

Language:

english

File:

PDF, 1.62 MB

english, 2000

15

Optimized lymphocyte isolation methods for analysis of chemokine receptor expression

Della Berhanu, Frank Mortari, Stephen C. De Rosa, Mario Roederer

Journal:

Journal of Immunological Methods

Year:

2003

Language:

english

File:

PDF, 1.49 MB

english, 2003

16

Immunocompetent T-Cells with a Memory-Like Phenotype are the Dominant Cell Type Following Antibody-Mediated T-Cell Depletion

Jonathan P. Pearl, Jeremy Parris, Douglas A. Hale, Steven C. Hoffmann, Wendy B. Bernstein, Kelly L. McCoy, S. John Swanson, Roslyn B. Mannon, Mario Roederer, Allan D. Kirk

Journal:

American Journal of Transplantation

Year:

2005

Language:

english

File:

PDF, 239 KB

english, 2005

17

A deep profiler's guide to cytometry

Sean C. Bendall, Garry P. Nolan, Mario Roederer, Pratip K. Chattopadhyay

Journal:

Trends in Immunology

Year:

2012

Language:

english

File:

PDF, 1.71 MB

english, 2012

18

Cytometry: Today’s technology and tomorrow’s horizons

Pratip K. Chattopadhyay, Mario Roederer

Journal:

Year:

2012

Language:

english

File:

PDF, 1.01 MB

english, 2012

19

The who's who of T-cell differentiation: Human memory T-cell subsets

Mahnke, Yolanda D., Brodie, Tess M., Sallusto, Federica, Roederer, Mario, Lugli, Enrico

Journal:

European Journal of Immunology

Year:

2013

Language:

english

File:

PDF, 418 KB

english, 2013

20

N -Acetylcysteine: A New Approach to Anti-HIV Therapy

ROEDERER, MARIO, ELA, STEPHEN W., STAAL, FRANK J.T., HERZENBERG, LEONORE A., HERZENBERG, LEONARD A.

Journal:

AIDS Research and Human Retroviruses

Year:

1992

Language:

english

File:

PDF, 1.49 MB

english, 1992

21

The Genetic Architecture of the Human Immune System: A Bioresource for Autoimmunity and Disease Pathogenesis

Roederer, Mario, Quaye, Lydia, Mangino, Massimo, Beddall, Margaret H., Mahnke, Yolanda, Chattopadhyay, Pratip, Tosi, Isabella, Napolitano, Luca, Terranova Barberio, Manuela, Menni, Cristina, Villanova

Journal:

Year:

2015

Language:

english

File:

PDF, 3.09 MB

english, 2015

22

A deadly dance: the choreography of host–pathogen interactions, as revealed by single-cell technologies

Chattopadhyay, Pratip K., Roederer, Mario, Bolton, Diane L.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 568 KB

english, 2018

23

Cy7PE and Cy7APC: Bright new probes for immunofluorescence

Mario Roederer, Aaron B. Kantor, David R. Parks, Leonard A. Herzenberg

Journal:

Cytometry Part A

Year:

1996

Language:

english

File:

PDF, 701 KB

english, 1996

24

Enzyme-generated intracellular fluorescence for single-cell reporter gene analysis utilizing Escherichia coli β-glucuronidase

Matthew Lorincz, Mario Roederer, Zhenjun Diwu, Leonard A. Herzenberg, Garry P. Nolan

Journal:

Cytometry Part A

Year:

1996

Language:

english

File:

PDF, 907 KB

english, 1996

25

8 Color, 10-parameter flow cytometry to elucidate complex leukocyte heterogeneity

Mario Roederer, Stephen De Rosa, Rachel Gerstein, Michael Anderson, Martin Bigos, Richard Stovel, Thomas Nozaki, David Parks, Leonore Herzenberg, Leonard Herzenberg

Journal:

Cytometry Part A

Year:

1997

Language:

english

File:

PDF, 375 KB

english, 1997

26

Flow cytometric DNA analysis of adrenocortical tumors in children

Suzanne R. Taylor, Mario Roederer, Robert F. Murphy

Journal:

Year:

1987

Language:

english

File:

PDF, 431 KB

english, 1987

27

Flow cytometric DNA analysis of Neuroblastoma and Ganglioneuroma. A 10-year retrospective study

Suzanne R. Taylor, Julie Blatt, Joseph P. Costantino, Mario Roederer, Robert F. Murphy

Journal:

Year:

1988

Language:

english

File:

PDF, 587 KB

english, 1988

28

Flow cytometry dna ploidy analysis and catecholamine secretion profiles in neuroblastoma

Carlos R. Abramowsky, Suzanne R. Taylor, Aaron H. Anton, Ana I. Berk, Mario Roederer, Robert F. Murphy

Journal:

Year:

1989

Language:

english

File:

PDF, 420 KB

english, 1989

29

Phycoerythrin-allophycocyanin: A resonance energy transfer fluorochrome for immunofluorescence

Iwan Tjioe, Tim Legerton, Jo Wegstein, Leonard A. Herzenberg, Mario Roederer

Journal:

Cytometry Part A

Year:

2001

Language:

english

File:

PDF, 357 KB

english, 2001

30

Probability binning comparison: A metric for quantitating univariate distribution differences

Mario Roederer, Adam Treister, Wayne Moore, Leonore A. Herzenberg

Journal:

Cytometry Part A

Year:

2001

Language:

english

File:

PDF, 554 KB

english, 2001

31

Frequency difference gating: A multivariate method for identifying subsets that differ between samples

Mario Roederer, Richard R. Hardy

Journal:

Cytometry Part A

Year:

2001

Language:

english

File:

PDF, 789 KB

english, 2001

32

Compensation is not dependent on signal intensity or on number of parameters

Journal:

Cytometry Part A

Year:

2001

Language:

english

File:

PDF, 33 KB

english, 2001

33

Cell-by-cell autofluorescence correction for low signal-to-noise systems: Application to epidermal growth factor endocytosis by 3T3 fibroblasts

Mario Roederer, Robert F. Murphy

Journal:

Cytometry Part A

Year:

1986

Language:

english

File:

PDF, 702 KB

english, 1986

34

Improved FACS-Gal: Flow cytometric analysis and sorting of viable eukaryotic cells expressing reporter gene constructs

Steven N. Fiering, Mario Roederer, Garry P. Nolan, David R. Micklem, David R. Parks, Leonard A. Herzenberg

Journal:

Cytometry Part A

Year:

1991

Language:

english

File:

PDF, 1.17 MB

english, 1991

35

A new “Logicle” display method avoids deceptive effects of logarithmic scaling for low signals and compensated data

David R. Parks, Mario Roederer, Wayne A. Moore

Journal:

Cytometry Part A

Year:

2006

Language:

english

File:

PDF, 1.51 MB

english, 2006

36

Increased immunofluorescence sensitivity using 532 nm laser excitation

Stephen P. Perfetto, Mario Roederer

Journal:

Cytometry Part A

Year:

2007

Language:

english

File:

PDF, 1.03 MB

english, 2007

37

Differential susceptibility of leukocyte subsets to cytotoxic T cell killing: Implications for HIV immunopathogenesis

Jie Liu, Mario Roederer

Journal:

Cytometry Part A

Year:

2007

Language:

english

File:

PDF, 510 KB

english, 2007

38

How many events is enough? Are you positive?

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 59 KB

english, 2008

39

Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part II: Panel performance across different instrument platforms

Bridget E. McLaughlin, Nicole Baumgarth, Martin Bigos, Mario Roederer, Stephen C. De Rosa, John D. Altman, Douglas F. Nixon, Janet Ottinger, Judy Li, Laurel Beckett, Barbara L. Shacklett, Thomas G. Ev

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 1.28 MB

english, 2008

40

Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part I: Panel design by an empiric approach

Bridget E. McLaughlin, Nicole Baumgarth, Martin Bigos, Mario Roederer, Stephen C. De Rosa, John D. Altman, Douglas F. Nixon, Janet Ottinger, Carol Oxford, Thomas G. Evans, David M. Asmuth

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 873 KB

english, 2008

41

Polychromatic plots: Graphical display of multidimensional data

Mario Roederer, M. Anthony Moody

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 1.35 MB

english, 2008

42

Techniques to improve the direct ex vivo detection of low frequency antigen-specific CD8+ T cells with peptide-major histocompatibility complex class I tetramers

Pratip K. Chattopadhyay, J. Joseph Melenhorst, Kristin Ladell, Emma Gostick, Phillip Scheinberg, A. John Barrett, Linda Wooldridge, Mario Roederer, Andrew K. Sewell, David A. Price

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 550 KB

english, 2008

43

Optimizing peptide matrices for identifying T-cell antigens

Melissa L. Precopio, Tiffany R. Butterfield, Joseph P. Casazza, Susan J. Little, Douglas D. Richman, Richard A. Koup, Mario Roederer

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 191 KB

english, 2008

44

Measuring Antigen-Specific Immune Responses, 2008 update

Jan W. Gratama, Florian Kern, Fabrizio Manca, Mario Roederer

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 93 KB

english, 2008

45

The Flow Cytometry Shared Resource Laboratory: Best practices to assure a high-quality, cost-effective partnership with biomedical research laboratories

Jonni Moore, Mario Roederer

Journal:

Cytometry Part A

Year:

2009

Language:

english

File:

PDF, 106 KB

english, 2009

46

Publication of optimized multicolor immunofluorescence panels

Yolanda Mahnke, Pratip Chattopadhyay, Mario Roederer

Journal:

Cytometry Part A

Year:

2010

Language:

english

File:

PDF, 102 KB

english, 2010

47

Good cell, bad cell: Flow cytometry reveals T-cell subsets important in HIV disease

Pratip K. Chattopadhyay, Mario Roederer

Journal:

Cytometry Part A

Year:

2010

Language:

english

File:

PDF, 149 KB

english, 2010

48

Heavy metal contaminants can eliminate quantum dot fluorescence

David Zarkowsky, Laurie Lamoreaux, Pratip Chattopadhyay, Richard A. Koup, Stephen P. Perfetto, Mario Roederer

Journal:

Cytometry Part A

Year:

2011

Language:

english

File:

PDF, 2.25 MB

english, 2011

49

SPICE: Exploration and analysis of post-cytometric complex multivariate datasets

Mario Roederer, Joshua L. Nozzi, Martha C. Nason

Journal:

Cytometry Part A

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

50

Interpretation of cellular proliferation data: Avoid the panglossian

Journal:

Cytometry Part A

Year:

2011

Language:

english

File:

PDF, 365 KB

english, 2011