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51

Efficiently resolving the basal clades of a phylogenetic tree using Bayesian and parsimony approaches: a case study using mitogenomic data from 100 higher teleost fishes

Mark P. Simmons, Masaki Miya

Journal:

Molecular Phylogenetics and Evolution

Year:

2004

Language:

english

File:

PDF, 459 KB

english, 2004

52

Mitogenomic evidence for the monophyly of elopomorph fishes (Teleostei) and the evolutionary origin of the leptocephalus larva

Jun G. Inoue, Masaki Miya, Katsumi Tsukamoto, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2004

Language:

english

File:

PDF, 790 KB

english, 2004

53

Molecular phylogeny and evolution of the freshwater eels genus Anguilla based on the whole mitochondrial genome sequences

Yuki Minegishi, Jun Aoyama, Jun G. Inoue, Masaki Miya, Mutsumi Nishida, Katsumi Tsukamoto

Journal:

Molecular Phylogenetics and Evolution

Year:

2005

Language:

english

File:

PDF, 461 KB

english, 2005

54

Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: Implications for higher-level relationships within the Otocephala

Sébastien Lavoué, Masaki Miya, Jun G. Inoue, Kenji Saitoh, Naoya B. Ishiguro, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2005

Language:

english

File:

PDF, 499 KB

english, 2005

55

Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences

Sébastien Lavoué, Masaki Miya, Kenji Saitoh, Naoya B. Ishiguro, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2007

Language:

english

File:

PDF, 786 KB

english, 2007

56

Monophyly, phylogenetic position and inter-familial relationships of the Alepocephaliformes (Teleostei) based on whole mitogenome sequences

Sébastien Lavoué, Masaki Miya, Jan Y. Poulsen, Peter R. Møller, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2008

Language:

english

File:

PDF, 406 KB

english, 2008

57

Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences

Davin H.E. Setiamarga, Masaki Miya, Yusuke Yamanoue, Kohji Mabuchi, Takashi P. Satoh, Jun G. Inoue, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2008

Language:

english

File:

PDF, 1.86 MB

english, 2008

58

Stickleback phylogenies resolved: Evidence from mitochondrial genomes and 11 nuclear genes

Ryouka Kawahara, Masaki Miya, Kohji Mabuchi, Thomas J. Near, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2009

Language:

english

File:

PDF, 227 KB

english, 2009

59

Unique patterns of pelvic fin evolution: A case study of balistoid fishes (Pisces: Tetraodontiformes) based on whole mitochondrial genome sequences

Yusuke Yamanoue, Masaki Miya, Keiichi Matsuura, Harumi Sakai, Masaya Katoh, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2009

Language:

english

File:

PDF, 913 KB

english, 2009

60

The historical biogeography of the freshwater knifefishes using mitogenomic approaches: A Mesozoic origin of the Asian notopterids (Actinopterygii: Osteoglossomorpha)

Jun G. Inoue, Yoshinori Kumazawa, Masaki Miya, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2009

Language:

english

File:

PDF, 1.66 MB

english, 2009

61

Phylogenetic relationships of catostomid fishes (Actinopterygii: Cypriniformes) based on mitochondrial ND4/ND5 gene sequences

Michael H. Doosey, Henry L. Bart Jr., Kenji Saitoh, Masaki Miya

Journal:

Molecular Phylogenetics and Evolution

Year:

2010

Language:

english

File:

PDF, 505 KB

english, 2010

62

Mitogenomic evaluation of the unique facial nerve pattern as a phylogenetic marker within the percifom fishes (Teleostei: Percomorpha)

Naoki Yagishita, Masaki Miya, Yusuke Yamanoue, Shigeru M. Shirai, Kouji Nakayama, Nobuaki Suzuki, Takashi P. Satoh, Kohji Mabuchi, Mutsumi Nishida, Tetsuji Nakabo

Journal:

Molecular Phylogenetics and Evolution

Year:

2009

Language:

english

File:

PDF, 660 KB

english, 2009

63

Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae)

Kevin L. Tang, Mary K. Agnew, Wei-Jen Chen, M. Vincent Hirt, Morgan E. Raley, Tetsuya Sado, Leah M. Schneider, Lei Yang, Henry L. Bart, Shunping He, Huanzhang Liu, Masaki Miya, Kenji Saitoh, Andrew M.

Journal:

Molecular Phylogenetics and Evolution

Year:

2011

Language:

english

File:

PDF, 733 KB

english, 2011

64

Analyses of erosion and re-deposition layers on graphite tiles used in the W-shaped divertor region of JT-60U

Y. Gotoh, J. Yagyu, K. Masaki, K. Kizu, A. Kaminaga, K. Kodama, T. Arai, T. Tanabe, N. Miya

Journal:

Journal of Nuclear Materials

Year:

2003

Language:

english

File:

PDF, 524 KB

english, 2003

65

Hydrogen isotope behavior in in-vessel components used for DD plasma operation of JT-60U by SIMS and XPS technique

Y. Oya, Y. Hirohata, Y. Morimoto, H. Yoshida, H. Kodama, K. Kizu, J. Yagyu, Y. Gotoh, K. Masaki, K. Okuno, T. Tanabe, N. Miya, T. Hino, S. Tanaka

Journal:

Journal of Nuclear Materials

Year:

2003

Language:

english

File:

PDF, 263 KB

english, 2003

66

A repetitive pellet injection system for JT-60U

Kizu, K, Hosogane, N, Hiratsuka, H, Ichige, H, Sasajima, T, Masaki, K, Miya, N, Honda, M, Iwahashi, T, Sasaki, N, Lang, P.T

Journal:

Fusion Engineering and Design

Year:

2001

Language:

english

File:

PDF, 153 KB

english, 2001

67

High heat load test of CFC divertor target plate with screw tube for JT-60 superconducting modification

K Masaki, M Taniguchi, Y Miyo, S Sakurai, K Sato, K Ezato, H Tamai, A Sakasai, M Matsukawa, S Ishida, N Miya

Journal:

Fusion Engineering and Design

Year:

2002

Language:

english

File:

PDF, 262 KB

english, 2002

68

Evaluation of radiation shielding, nuclear heating and dose rate for JT-60 superconducting modification

A. Morioka, A. Sakasai, K. Masaki, S. Ishida, N. Miya, M. Matsukawa, A. Kaminaga, A. Oikawa

Journal:

Fusion Engineering and Design

Year:

2002

Language:

english

File:

PDF, 294 KB

english, 2002

69

First wall issues related with energetic particle deposition in a tokamak fusion power reactor

K Tobita, S Nishio, S Konishi, M Sato, T Tanabe, K Masaki, N Miya

Journal:

Fusion Engineering and Design

Year:

2003

Language:

english

File:

PDF, 385 KB

english, 2003

70

Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the “ancient fish”

Jun G Inoue, Masaki Miya, Katsumi Tsukamoto, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2003

Language:

english

File:

PDF, 593 KB

english, 2003

71

Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences

Masaki Miya, Hirohiko Takeshima, Hiromitsu Endo, Naoya B Ishiguro, Jun G Inoue, Takahiko Mukai, Takashi P Satoh, Motoomi Yamaguchi, Akira Kawaguchi, Kohji Mabuchi, Shigeru M Shirai, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2003

Language:

english

File:

PDF, 471 KB

english, 2003

72

Basal euteleostean relationships: a mitogenomic perspective on the phylogenetic reality of the “Protacanthopterygii”

Naoya B Ishiguro, Masaki Miya, Mutsumi Nishida

Journal:

Molecular Phylogenetics and Evolution

Year:

2003

Language:

english

File:

PDF, 803 KB

english, 2003

73

Complete mitochondrial DNA sequence of the Japanese sardine Sardinops melanostictus

Jun G Inoue, Masaki Miya, Katsumi Tsukamoto, Mutsumi Nishida

Journal:

Fisheries Science

Year:

2000

Language:

english

File:

PDF, 1.11 MB

english, 2000

74

Complete mitochondrial DNA sequence of the Japanese eel Anguilla japonica†

Jun G Inoue, Masaki Miya, Jun Aoyama, Satoshi Ishikawa, Katsumi Tsukamoto, Mutsumi Nishida

Journal:

Fisheries Science

Year:

2001

Language:

english

File:

PDF, 1.06 MB

english, 2001

75

Complete mitochondrial DNA sequence of ayu Plecoglossus altivelis

Naoya Ishiguro, Masaki Miya, Mutsumi Nishida

Journal:

Fisheries Science

Year:

2001

Language:

english

File:

PDF, 1.05 MB

english, 2001

76

Complete mitochondrial DNA sequence of the Japanese anchovy Engraulis japonicus

Jun G Inoue, Masaki Miya, Katsumi Tsukamoto, Mutsumi Nishida

Journal:

Fisheries Science

Year:

2001

Language:

english

File:

PDF, 1.14 MB

english, 2001

77

Some aspects of the biology of the micronektonic fishCyclothone pallidaandC. acclinidens(Pisces: Gonostomatidae) in Sagami Bay, Central Japan

Masaki Miya, Takahisa Nemoto

Journal:

Journal of Oceanography

Year:

1986

Language:

english

File:

PDF, 588 KB

english, 1986

78

Mitochondrial Genomics of Ostariophysan Fishes: Perspectives on Phylogeny and Biogeography

Kenji Saitoh, Masaki Miya, Jun G. Inoue, Naoya B. Ishiguro, Mutsumi Nishida

Journal:

Journal of Molecular Evolution

Year:

2003

Language:

english

File:

PDF, 324 KB

english, 2003

79

Evolution of the Mitochondrial Genome in Cephalochordata as Inferred from Complete Nucleotide Sequences from TwoEpigonichthysSpecies

Masahiro Nohara, Mutsumi Nishida, Masaki Miya, Teruaki Nishikawa

Journal:

Journal of Molecular Evolution

Year:

2005

Language:

english

File:

PDF, 342 KB

english, 2005

80

Gene Rearrangements and Evolution of tRNA Pseudogenes in the Mitochondrial Genome of the Parrotfish (Teleostei: Perciformes: Scaridae)

Kohji Mabuchi, Masaki Miya, Takashi P. Satoh, Mark W. Westneat, Mutsumi Nishida

Journal:

Journal of Molecular Evolution

Year:

2004

Language:

english

File:

PDF, 333 KB

english, 2004

81

Complete Mitochondrial DNA Sequence ofConger myriaster(Teleostei: Anguilliformes): Novel Gene Order for Vertebrate Mitochondrial Genomes and the Phylogenetic Implications for Anguilliform Families

Jun G. Inoue, Masaki Miya, Katsumi Tsukamoto, Mutsumi Nishida

Journal:

Journal of Molecular Evolution

Year:

2001

Language:

english

File:

PDF, 1.22 MB

english, 2001

82

Organization of the Mitochondrial Genome of Antarctic KrillEuphausia superba(Crustacea: Malacostraca)

Ryuji J. Machida, Masaki U. Miya, Mitsugu M. Yamauchi, Mutsumi Nishida, Shuhei Nishida

Journal:

Marine Biotechnology

Year:

2004

Language:

english

File:

PDF, 585 KB

english, 2004

83

High-dose dexamethasone plus antihistamine prevents colorectal cancer patients treated with modified FOLFOX6 from hypersensitivity reactions induced by oxaliplatin

Yasuhiro Kidera, Taroh Satoh, Shinya Ueda, Wataru Okamoto, Isamu Okamoto, Soichi Fumita, Kimio Yonesaka, Hidetoshi Hayashi, Chihiro Makimura, Kunio Okamoto, Hidemi Kiyota, Junji Tsurutani, Masaki Miya

Journal:

International Journal of Clinical Oncology

Year:

2011

Language:

english

File:

PDF, 159 KB

english, 2011

84

Complete mitochondrial DNA sequence ofAulopus japonicus(Teleostei: Aulopiformes), a basal Eurypterygii: longer DNA sequences and higher-level relationships

Akira Kawaguchi, Masaki Miya, Mutsumi Nishida

Journal:

Ichthyological Research

Year:

2001

Language:

english

File:

PDF, 661 KB

english, 2001

85

Mitochondrial genomes and phylogeny of the ocean sunfishes (Tetraodontiformes: Molidae)

Yusuke Yamanoue, Masaki Miya, Keiichi Matsuura, Masaya Katoh, Harumi Sakai, Mutsumi Nishida

Journal:

Ichthyological Research

Year:

2004

Language:

english

File:

PDF, 258 KB

english, 2004

86

New primers for amplifying and sequencing the mitochondrial ND4/ND5 gene region of the Cypriniformes (Actinopterygii: Ostariophysi)

Masaki Miya, Kenji Saitoh, Robert Wood, Mutsumi Nishida, Richard L. Mayden

Journal:

Ichthyological Research

Year:

2006

Language:

english

File:

PDF, 1.61 MB

english, 2006

87

The phylogenetic position of an undescribed paedomorphic clupeiform taxon: mitogenomic evidence

Sébastien Lavoué, Masaki Miya, Akira Kawaguchi, Tetsuo Yoshino, Mutsumi Nishida

Journal:

Ichthyological Research

Year:

2008

Language:

english

File:

PDF, 282 KB

english, 2008

88

Mitochondrial genome and a nuclear gene indicate a novel phylogenetic position of deep-sea tube-eye fish (Stylephoridae)

Masaki Miya, Nancy I. Holcroft, Takashi P. Satoh, Motoomi Yamaguchi, Mutsumi Nishida, E.O. Wiley

Journal:

Ichthyological Research

Year:

2007

Language:

english

File:

PDF, 437 KB

english, 2007

89

Hydrogen isotope distributions and retentions in the inner divertor tile of JT-60U

Y. Oya, Y. Hirohata, T. Tanabe, T. Shibahara, H. Kimura, M. Oyaidzu, T. Arai, K. Masaki, Y. Gotoh, K. Okuno, N. Miya, T. Hino, S. Tanaka

Journal:

Fusion Engineering and Design

Year:

2005

Language:

english

File:

PDF, 196 KB

english, 2005

90

Distribution of hydrogen isotopes retained in the divertor tiles used in JT-60U

Y. Hirohata, T. Tanabe, T. Shibahara, M. Oyaidzu, K. Sugiyama, Y. Oya, A. Yoshikawa, Y. Onishi, T. Arai, K. Masaki, Y. Ishimoto, K. Okuno, N. Miya

Journal:

Journal of Nuclear Materials

Year:

2007

Language:

english

File:

PDF, 817 KB

english, 2007

91

Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae)

Kevin L. Tang, Mary K. Agnew, M. Vincent Hirt, Tetsuya Sado, Leah M. Schneider, Jörg Freyhof, Zohrah Sulaiman, Ernst Swartz, Chavalit Vidthayanon, Masaki Miya, Kenji Saitoh, Andrew M. Simons, Robert M

Journal:

Molecular Phylogenetics and Evolution

Year:

2010

Language:

english

File:

PDF, 1.23 MB

english, 2010

92

Imaging plate technique for determination of tritium distribution on graphite tiles of JT-60U

T. Tanabe, K. Miyasaka, K. Masaki, K. Kodama, N. Miya

Journal:

Journal of Nuclear Materials

Year:

2002

Language:

english

File:

PDF, 263 KB

english, 2002

93

Tritium distribution in JT-60U W-shaped divertor

K. Masaki, K. Sugiyama, T. Tanabe, Y. Gotoh, K. Miyasaka, K. Tobita, Y. Miyo, A. Kaminaga, K. Kodama, T. Arai, N. Miya

Journal:

Journal of Nuclear Materials

Year:

2003

Language:

english

File:

PDF, 285 KB

english, 2003

94

The phylogenetic position of toadfishes (order Batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genome sequences

MASAKI MIYA, TAKASHI P. SATOH, MUTSUMI NISHIDA

Journal:

Biological Journal of the Linnean Society

Year:

2005

Language:

english

File:

PDF, 585 KB

english, 2005

95

Higher and lower-level relationships of the deep-sea fish order Alepocephaliformes (Teleostei: Otocephala) inferred from whole mitogenome sequences

JAN Y. POULSEN, PETER R. MØLLER, SÉBASTIEN LAVOUÉ, STEEN W. KNUDSEN, MUTSUMI NISHIDA, MASAKI MIYA

Journal:

Biological Journal of the Linnean Society

Year:

2009

Language:

english

File:

PDF, 455 KB

english, 2009

96

Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)

KENJI SAITOH, TETSUYA SADO, MICHAEL H. DOOSEY, HENRY L. BART Jr, JUN G. INOUE, MUTSUMI NISHIDA, RICHARD L. MAYDEN, MASAKI MIYA

Journal:

Zoological Journal of the Linnean Society

Year:

2011

Language:

english

File:

PDF, 693 KB

english, 2011

97

Molecular phylogeny of the fishes traditionally referred to Cyprinini sensu stricto (Teleostei: Cypriniformes)

Lei Yang, Richard L. Mayden, Tetsuya Sado, Shunping He, Kenji Saitoh, Masaki Miya

Journal:

Zoologica Scripta

Year:

2010

Language:

english

File:

PDF, 831 KB

english, 2010

98

10.1038/39774

Miya, Masaki, Nishida, Mutsumi

Journal:

Year:

1997

Language:

english

File:

PDF, 123 KB

english, 1997

99

Large-scale gene rearrangements in the mitochondrial genomes of two calanoid copepods Eucalanus bungii and Neocalanus cristatus (Crustacea), with notes on new versatile primers for the srRNA and COI genes

Ryuji J Machida, Masaki U Miya, Mutsumi Nishida, Shuhei Nishida

Journal:

Year:

2004

Language:

english

File:

PDF, 237 KB

english, 2004

100

Biogeography and evolution of theCarassius auratus-complex in East Asia

Mikumi Takada, Katsunori Tachihara, Takeshi Kon, Gunji Yamamoto, Kei'ichiro Iguchi, Masaki Miya, Mutsumi Nishida

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 3.20 MB

english, 2010