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51

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Mining Regulatory Network Connections by Ranking Transcription Factor Target Genes Using Time Series Expression Data

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 345 KB

english, 2013

52

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Mining Frequent Subtrees in Glycan Data Using the Rings Glycan Miner Tool

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 329 KB

english, 2013

53

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Identifying Pathways of Coordinated Gene Expression

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 643 KB

english, 2013

54

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Gene Set/Pathway Enrichment Analysis

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 590 KB

english, 2013

55

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Localization Prediction and Structure-Based In Silico Analysis of Bacterial Proteins: With Emphasis on Outer Membrane Proteins

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 571 KB

english, 2013

56

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Construction of Functional Linkage Gene Networks by Data Integration

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 247 KB

english, 2013

57

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Analysis Strategy of Protein–Protein Interaction Networks

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 2.29 MB

english, 2013

58

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Data Mining in the MetaCyc Family of Pathway Databases

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 678 KB

english, 2013

59

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Chemogenomic Approaches to Infer Drug–Target Interaction Networks

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 202 KB

english, 2013

60

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Genome-Wide Association Studies

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 259 KB

english, 2013

61

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Viral Genome Analysis and Knowledge Management

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 221 KB

english, 2013

62

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 || Molecular Network Analysis of Diseases and Drugs in KEGG

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 859 KB

english, 2013

63

Efficient Semisupervised MEDLINE Document Clustering With MeSH-Semantic and Global-Content Constraints

Gu, Jun, Feng, Wei, Zeng, Jia, Mamitsuka, Hiroshi, Zhu, Shanfeng

Journal:

IEEE Transactions on Cybernetics

Year:

2013

Language:

english

File:

PDF, 1.50 MB

english, 2013

64

Graph mining: procedure, application to drug discovery and recent advances

Takigawa, Ichigaku, Mamitsuka, Hiroshi

Journal:

Drug Discovery Today

Year:

2013

Language:

english

File:

PDF, 449 KB

english, 2013

65

[ACM Press the 19th ACM SIGKDD international conference - Chicago, Illinois, USA (2013.08.11-2013.08.14)] Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD '13 - Collaborative matrix factorization with multiple similarities for predicting drug-target interactions

Zheng, Xiaodong, Ding, Hao, Mamitsuka, Hiroshi, Zhu, Shanfeng

Year:

2013

Language:

english

File:

PDF, 804 KB

english, 2013

66

[Methods in Molecular Biology] Data Mining for Systems Biology Volume 939 ||

Mamitsuka, Hiroshi, DeLisi, Charles, Kanehisa, Minoru

Year:

2013

Language:

english

File:

PDF, 8.00 MB

english, 2013

67

Fast algorithms for finding a minimum repetition representation of strings and trees

Nakamura, Atsuyoshi, Saito, Tomoya, Takigawa, Ichigaku, Kudo, Mineichi, Mamitsuka, Hiroshi

Journal:

Discrete Applied Mathematics

Year:

2013

Language:

english

File:

PDF, 1.40 MB

english, 2013

68

NetPathMiner: R/Bioconductor package for network path mining through gene expression

Mohamed, A., Hancock, T., Nguyen, C. H., Mamitsuka, H.

Journal:

Year:

2014

Language:

english

File:

PDF, 825 KB

english, 2014

69

Detecting Differentially Coexpressed Genes from Labeled Expression Data: A Brief Review

Kayano, Mitsunori, Shiga, Motoki, Mamitsuka, Hiroshi

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.32 MB

english, 2014

70

Identification of Endocrine Disruptor Biodegradation by Integration of Structure–activity Relationship with Pathway Analysis

Kadowaki, Tadashi, Wheelock, Craig E., Adachi, Tetsuya, Kudo, Taku, Okamoto, Shinobu, Tanaka, Nobuya, Tonomura, Koichiro, Tsujimoto, Gozoh, Mamitsuka, Hiroshi, Goto, Susumu, Kanehisa, Minoru

Journal:

Environmental Science & Technology

Year:

2007

Language:

english

File:

PDF, 282 KB

english, 2007

71

Shiga, Motoki, Mamitsuka, Hiroshi

Journal:

IEEE Transactions on Knowledge and Data Engineering

Year:

2012

Language:

english

File:

PDF, 2.04 MB

english, 2012

72

Integrated View of the Human Chromosome X-centric Proteome Project

Yamamoto, Tadashi, Nakayama, Keiichi, Hirano, Hisashi, Tomonaga, Takeshi, Ishihama, Yasushi, Yamada, Tetsushi, Kondo, Tadashi, Kodera, Yoshio, Sato, Yuichi, Araki, Norie, Mamitsuka, Hiroshi, Goshima,

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 230 KB

english, 2013

73

[IEEE Comput. Soc Third IEEE Symposium on BioInformatics and BioEngineering. BIBE 2003 - Bethesda, MD, USA (10-12 March 2003)] Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. - Detecting experimental noises in protein-protein interactions with iterative sampling and model-based clustering

Year:

2003

Language:

english

File:

PDF, 381 KB

english, 2003

74

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - A hierarchical mixture of markov models for finding biologically active metabolic paths using gene expression and protein classes

Mamitsuka, H., Okuno, Y.

Year:

2004

Language:

english

File:

PDF, 400 KB

english, 2004

75

Evaluation of serum-based cancer biomarkers: A brief review from a clinical and computational viewpoint

Yotsukura, Sohiya, Mamitsuka, Hiroshi

Journal:

Critical Reviews in Oncology/Hematology

Year:

2015

Language:

english

File:

PDF, 1.41 MB

english, 2015

76

Essential Latent Knowledge for Protein-Protein Interactions: Analysis by an Unsupervised Learning Approach

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.20 MB

english, 2005

77

A Learning Method of Hidden Markov Models for Sequence Discrimination

MAMITSUKA, HIROSHI

Journal:

Journal of Computational Biology

Year:

1996

Language:

english

File:

PDF, 2.58 MB

english, 1996

78

MetaMHC: a meta approach to predict peptides binding to MHC molecules

Hu, X., Zhou, W., Udaka, K., Mamitsuka, H., Zhu, S.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 2.64 MB

english, 2010

79

Boosted Network Classifiers for Local Feature Selection

Hancock, T., Mamitsuka, H.

Journal:

IEEE Transactions on Neural Networks and Learning Systems

Year:

2012

Language:

english

File:

PDF, 4.58 MB

english, 2012

80

[IEEE Comput. Soc Third IEEE Symposium on BioInformatics and BioEngineering. BIBE 2003 - Bethesda, MD, USA (10-12 March 2003)] Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings. - Empirical evaluation of ensemble feature subset selection methods for learning from a high-dimensional database in drug design

Year:

2003

Language:

english

File:

PDF, 334 KB

english, 2003

81

[IEEE 2010 IEEE International Workshop on Machine Learning for Signal Processing (MLSP) - Kittila, Finland (2010.08.29-2010.09.1)] 2010 IEEE International Workshop on Machine Learning for Signal Processing - Variational Bayes learning over multiple graphs

Shiga, Motoki, Hiroshi Mamitsuka,

Year:

2010

Language:

english

File:

PDF, 168 KB

english, 2010

82

[IEEE Comput. Soc 14th International Workshop on Database and Expert Systems Applications - Prague, Czech Republic (1-5 Sept. 2003)] 14th International Workshop on Database and Expert Systems Applications, 2003. Proceedings. - Efficient mining from heterogeneous data sets for predicting protein-protein interactions

Year:

2003

Language:

english

File:

PDF, 300 KB

english, 2003

83

[ACM Press the 13th ACM SIGKDD international conference - San Jose, California, USA (2007.08.12-2007.08.15)] Proceedings of the 13th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD '07 - A spectral clustering approach to optimally combining numericalvectors with a modular network

Shiga, Motoki, Takigawa, Ichigaku, Mamitsuka, Hiroshi

Year:

2007

Language:

english

File:

PDF, 1.64 MB

english, 2007

84

Empirical Evaluation of a Dynamic Experiment Design Method for Prediction of MHC Class I-Binding Peptides

Udaka, K., Mamitsuka, H., Nakaseko, Y., Abe, N.

Journal:

The Journal of Immunology

Year:

2002

Language:

english

File:

PDF, 816 KB

english, 2002

85

Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules

Zhu, S., Udaka, K., Sidney, J., Sette, A., Aoki-Kinoshita, K. F., Mamitsuka, H.

Journal:

Year:

2006

Language:

english

File:

PDF, 151 KB

english, 2006

86

ROS-DET: robust detector of switching mechanisms in gene expression

Kayano, M., Takigawa, I., Shiga, M., Tsuda, K., Mamitsuka, H.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 1.92 MB

english, 2011

87

In Silico Predictions of Human Skin Permeability using Nonlinear Quantitative Structure–Property Relationship Models

Baba, Hiromi, Takahara, Jun-ichi, Mamitsuka, Hiroshi

Journal:

Pharmaceutical Research

Year:

2015

Language:

english

File:

PDF, 1.18 MB

english, 2015

88

A probabilistic model for mining implicit 'chemical compound-gene' relations from literature

Zhu, S., Okuno, Y., Tsujimoto, G., Mamitsuka, H.

Journal:

Year:

2005

Language:

english

File:

PDF, 85 KB

english, 2005

89

Non-Negative Matrix Factorization with Auxiliary Information on Overlapping Groups

Shiga, Motoki, Mamitsuka, Hiroshi

Journal:

IEEE Transactions on Knowledge and Data Engineering

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

90

Application of a new probabilistic model for recognizing complex patterns in glycans

Aoki, K. F., Ueda, N., Yamaguchi, A., Kanehisa, M., Akutsu, T., Mamitsuka, H.

Journal:

Year:

2004

Language:

english

File:

PDF, 317 KB

english, 2004

91

Mining significant tree patterns in carbohydrate sugar chains

Hashimoto, K., Takigawa, I., Shiga, M., Kanehisa, M., Mamitsuka, H.

Journal:

Year:

2008

Language:

english

File:

PDF, 291 KB

english, 2008

92

α-Helix region prediction with stochastic rule learning

Mamitsuka, Hiroshi, Yamanishi, Kenji

Journal:

Year:

1995

Language:

english

File:

PDF, 1.02 MB

english, 1995

93

Annotating gene function by combining expression data with a modular gene network

Shiga, M., Takigawa, I., Mamitsuka, H.

Journal:

Year:

2007

Language:

english

File:

PDF, 616 KB

english, 2007

94

Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data

Kayano, M., Takigawa, I., Shiga, M., Tsuda, K., Mamitsuka, H.

Journal:

Year:

2009

Language:

english

File:

PDF, 720 KB

english, 2009

95

Probabilistic path ranking based on adjacent pairwise coexpression for metabolic transcripts analysis

Takigawa, I., Mamitsuka, H.

Journal:

Year:

2008

Language:

english

File:

PDF, 511 KB

english, 2008

96

A score matrix to reveal the hidden links in glycans

Aoki, K. F., Mamitsuka, H., Akutsu, T., Kanehisa, M.

Journal:

Year:

2005

Language:

english

File:

PDF, 105 KB

english, 2005

97

Enhancing MEDLINE document clustering by incorporating MeSH semantic similarity

Zhu, S., Zeng, J., Mamitsuka, H.

Journal:

Year:

2009

Language:

english

File:

PDF, 144 KB

english, 2009

98

Current status and prospects of computational resources for natural product dereplication: a review

Mohamed, Ahmed, Nguyen, Canh Hao, Mamitsuka, Hiroshi

Journal:

Briefings in Bioinformatics

Year:

2015

Language:

english

File:

PDF, 495 KB

english, 2015

99

[ACM Press the 2005 ACM symposium - Santa Fe, New Mexico (2005.03.13-2005.03.17)] Proceedings of the 2005 ACM symposium on Applied computing - SAC '05 - Cleaning microarray expression data using Markov random fields based on profile similarity

Wan, Raymond, Mamitsuka, Hiroshi, Aoki, Kiyoko F.

Year:

2005

Language:

english

File:

PDF, 67 KB

english, 2005

100

[ACM Press the 12th ACM SIGKDD international conference - Philadelphia, PA, USA (2006.08.20-2006.08.23)] Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD '06 - A new efficient probabilistic model for mining labeled ordered trees

Hashimoto, Kosuke, Aoki-Kinoshita, Kiyoko F., Ueda, Nobuhisa, Kanehisa, Minoru, Mamitsuka, Hiroshi

Year:

2006

Language:

english

File:

PDF, 924 KB

english, 2006

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