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1

Can sodium bicarbonate really help in treating metabolic acidosis caused by aluminium phosphide poisoning?

Marashi, Sayed Mahdi, Nasri-Nasrabadi, Zeynab

Journal:

Archives of Industrial Hygiene and Toxicology

Year:

2015

Language:

english

File:

PDF, 150 KB

english, 2015

2

Gastric decontamination in aluminium phosphide poisoning: a case against the use of water-based solutions

Sanaei-Zadeh, Hossein, Marashi, Sayed Mahdi

Journal:

Archives of Industrial Hygiene and Toxicology

Year:

2016

Language:

english

File:

PDF, 331 KB

english, 2016

3

Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks

Sayed-Amir Marashi, Hani Goodarzi, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk

Journal:

Computational Biology and Chemistry

Year:

2006

Language:

english

File:

PDF, 525 KB

english, 2006

4

Evolutionarily conserved motifs and modules in mitochondrial protein–protein interaction networks

Jafari, Mohieddin, Sadeghi, Mehdi, Mirzaie, Mehdi, Marashi, Sayed-Amir, Rezaei-Tavirani, Mostafa

Journal:

Year:

2013

Language:

english

File:

PDF, 2.10 MB

english, 2013

5

A mathematical approach to emergent properties of metabolic networks: Partial coupling relations, hyperarcs and flux ratios

Marashi, Sayed-Amir, Tefagh, Mojtaba

Journal:

Journal of Theoretical Biology

Year:

2014

Language:

english

File:

PDF, 666 KB

english, 2014

6

Comments On “A Systematic Review Of Aluminium Phosphide Poisoning”

Nasri Nasrabadi, Zeynab, Marashi, Sayed Mahdi

Journal:

Archives of Industrial Hygiene and Toxicology

Year:

2012

Language:

english

File:

PDF, 85 KB

english, 2012

7

A network biology approach to understanding the importance of chameleon proteins in human physiology and pathology

Bahramali, Golnaz, Goliaei, Bahram, Minuchehr, Zarrin, Marashi, Sayed-Amir

Journal:

Year:

2017

Language:

english

File:

PDF, 1.55 MB

english, 2017

8

Novel heart valve prosthesis with self-endothelialization potential made of modified polyhedral oligomeric silsesquioxane-nanocomposite material

Ghanbari, Hossein, Radenkovic, Dina, Marashi, Sayed Mahdi, Parsno, Shirin, Roohpour, Nima, Burriesci, Gaetano, Seifalian, Alexander M.

Journal:

Year:

2016

Language:

english

File:

PDF, 6.38 MB

english, 2016

9

Nutrition and Lifestyle in Neurological Autoimmune Diseases || EBV Infection and Vitamin D in Multiple Sclerosis Patients

Marashi, Sayed Mahdi

Year:

2017

Language:

english

File:

PDF, 643 KB

english, 2017

10

Rotavirus VP6 as a potential vaccine candidate

Afchangi, Atefeh, Jalilvand, Somayeh, Mohajel, Nasir, Marashi, Sayed Mahdi, Shoja, Zabihollah

Journal:

Reviews in Medical Virology

Year:

2019

Language:

english

File:

PDF, 502 KB

english, 2019

11

A metabolic network-based approach for developing feeding strategies for CHO cells to increase monoclonal antibody production

Fouladiha, Hamideh, Marashi, Sayed-Amir, Torkashvand, Fatemeh, Mahboudi, Fereidoun, Lewis, Nathan E., Vaziri, Behrouz

Journal:

Bioprocess and Biosystems Engineering

Year:

2020

Language:

english

File:

PDF, 1.36 MB

english, 2020

12

In silico prediction of enzymatic reactions catalyzed by acid phosphatases

Zamani Amirzakaria, Javad, Malboobi, Mohammad Ali, Marashi, Sayed-Amir, Lohrasebi, Tahmineh

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2020

File:

PDF, 3.41 MB

2020

13

Rps27a might act as a controller of microglia activation in triggering neurodegenerative diseases

Khayer, Nasibeh, Mirzaie, Mehdi, Marashi, Sayed-Amir, Jalessi, Maryam, DâMello, Santosh R

Journal:

Year:

2020

File:

PDF, 2.30 MB

2020

14

Evolution of ‘Ligand-Diffusion Chreodes’ on Protein-Surface Models: A Genetic-Algorithm Study

Sayed-Amir Marashi, Mehdi Kargar, Ali Katanforoush, Hassan Abolhassani, Mehdi Sadeghi

Journal:

Chemistry & Biodiversity

Year:

2007

Language:

english

File:

PDF, 232 KB

english, 2007

15

Flux coupling analysis of metabolic networks is sensitive to missing reactions

Sayed-Amir Marashi, Alexander Bockmayr

Journal:

Year:

2011

Language:

english

File:

PDF, 696 KB

english, 2011

16

FFCA: a feasibility-based method for flux coupling analysis of metabolic networks

Laszlo David, Sayed-Amir Marashi, Abdelhalim Larhlimi, Bettina Mieth, Alexander Bockmayr

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 264 KB

english, 2011

17

Adaptation of proteins to different environments: A comparison of proteome structural properties in Bacillus subtilis and Escherichia coli

Sayed-Amir Marashi, Reza Behrouzi, Hamid Pezeshk

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 247 KB

english, 2007

18

On flux coupling analysis of metabolic subsystems

Sayed-Amir Marashi, Laszlo David, Alexander Bockmayr

Journal:

Journal of Theoretical Biology

Year:

2012

Language:

english

File:

PDF, 455 KB

english, 2012

19

Impact of RNA structure on the prediction of donor and acceptor splice sites

Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 272 KB

english, 2006

20

A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins

Armita Sheari, Mehdi Kargar, Ali Katanforoush, Shahriar Arab, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Sayed-Amir Marashi

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 551 KB

english, 2008

21

Impact of residue accessible surface area on the prediction of protein secondary structures

Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk, Sayed-Amir Marashi

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 338 KB

english, 2008

22

How reliable re-adjustment is: correspondence regarding A. Fuglsang, “The ‘effective number of codons’ revisited”

Sayed-Amir Marashi, Hamed Shateri Najafabadi

Journal:

Biochemical and Biophysical Research Communications

Year:

2004

Language:

english

File:

PDF, 235 KB

english, 2004

23

Correlations between genomic GC levels and optimal growth temperatures are not ‘robust’

Sayed-Amir Marashi, Zahra Ghalanbor

Journal:

Biochemical and Biophysical Research Communications

Year:

2004

Language:

english

File:

PDF, 272 KB

english, 2004

24

Modeling directed ligand passage toward enzyme active site by a ‘double cellular automata’ model

Sayed-Amir Marashi, Reza Behrouzi

Journal:

Biochemical and Biophysical Research Communications

Year:

2005

Language:

english

File:

PDF, 268 KB

english, 2005

25

β-Sheet capping: Signals that initiate and terminate β-sheet formation

Fahim FarzadFard, Nava Gharaei, Hamid Pezeshk, Sayed-Amir Marashi

Journal:

Journal of Structural Biology

Year:

2008

Language:

english

File:

PDF, 634 KB

english, 2008

26

Why major nonenzymatic glycation sites of human serum albumin are preferred to other residues?

Sayed-Amir Marashi, Shahrokh Safarian, Ali A. Moosavi-Movahedi

Journal:

Medical Hypotheses

Year:

2005

Language:

english

File:

PDF, 28 KB

english, 2005

27

Nanotechnology helps medicine: Nanoscale swimmers and their future applications

Zahra Ghalanbor, Sayed-Amir Marashi, Bijan Ranjbar

Journal:

Medical Hypotheses

Year:

2005

Language:

english

File:

PDF, 38 KB

english, 2005

28

On the identity of “citers”: Are papers promptly recognized by other investigators?

Sayed-Amir Marashi

Journal:

Medical Hypotheses

Year:

2005

Language:

english

File:

PDF, 32 KB

english, 2005

29

Application of β-lactamase-dependent prodrugs in clostridial-directed enzyme therapy (CDEPT): A proposal

Hassan Tirandaz, Javad Hamedi, Sayed-Amir Marashi

Journal:

Medical Hypotheses

Year:

2006

Language:

english

File:

PDF, 40 KB

english, 2006

30

On the mechanism of apoptosis-inducing activity of human calprotectin: Zinc sequestration, induction of a signaling pathway, or something else?

Hakimeh Zali, Sayed-Amir Marashi, Mostafa Rezaei-Tavirani, Parviz Toossi, Mohammad Rahmati-Roodsari, Mohammad Ali Shokrgozar

Journal:

Medical Hypotheses

Year:

2007

Language:

english

File:

PDF, 97 KB

english, 2007

31

Could hydroxyethyl starch be a therapeutic option in management of acute aluminum phosphide toxicity?

Sayed Mahdi Marashi, Mohammad Arefi, Behnam Behnoush, Mahdi Ghazanfari Nasrabad, Zeynab Nasri Nasrabadi

Journal:

Medical Hypotheses

Year:

2011

Language:

english

File:

PDF, 129 KB

english, 2011

32

Inflammation in common variable immunodeficiency is associated with a distinct CD8+ response to cytomegalovirus

Marashi, Sayed Mahdi, Raeiszadeh, Mohammad, Workman, Sarita, Rahbar, Afsar, Soderberg-Naucler, Cecilia, Klenerman, Paul, Chee, Ronnie, Webster, A. David, Milne, Richard S.B., Emery, Vincent C.

Journal:

Journal of Allergy and Clinical Immunology

Year:

2011

Language:

english

File:

PDF, 1.32 MB

english, 2011

33

Influence of cytomegalovirus infection on immune cell phenotypes in patients with common variable immunodeficiency

Marashi, Sayed Mahdi, Raeiszadeh, Mohammed, Enright, Victoria, Tahami, Fariba, Workman, Sarita, Chee, Ronnie, Webster, A. David, Milne, Richard S.B., Emery, Vincent C.

Journal:

Journal of Allergy and Clinical Immunology

Year:

2012

Language:

english

File:

PDF, 811 KB

english, 2012

34

Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data

Jafari, Mohieddin, Mirzaie, Mehdi, Sadeghi, Mehdi, Marashi, Sayed-Amir, Rezaei-Tavirani, Mostafa

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2013

Language:

english

File:

PDF, 666 KB

english, 2013

35

Is there a role for progesterone in the management of acute organophosphate poisoning during pregnancy?

Jafarzadeh, Mostafa, Nasri Nasrabadi, Zeynab, Sheikhazadi, Ardeshir, Abbaspour, Abdollah, Vasigh, Shayesteh, Yousefinejad, Vahid, Marashi, Sayed Mahdi

Journal:

Medical Hypotheses

Year:

2013

Language:

english

File:

PDF, 141 KB

english, 2013

36

Analysis of Metabolic Subnetworks by Flux Cone Projection

Sayed-Amir Marashi, Laszlo David, Alexander Bockmayr

Journal:

Algorithms for Molecular Biology

Year:

2012

Language:

english

File:

PDF, 311 KB

english, 2012

37

Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis ofEscherichia colimetabolism

Tabe-Bordbar, Shayan, Marashi, Sayed-Amir

Journal:

Biotechnology Letters

Year:

2013

Language:

english

File:

PDF, 359 KB

english, 2013

38

Intra-peritoneal and intra-rectal immunogenicity induced by rotavirus virus like particles 2/6/7 in mice

Marashi, Sayed-Mahdi, Jalilvand, Somayeh, Mollaei-Kandelous, Yaghoub, Shahmahmoodi, Shohreh, Rezaei, Farhad, Salimi, Vahid, Nejati, Ahmad, Validi, Majid, Shoja, Zabihollah

Journal:

Microbial Pathogenesis

Year:

2014

Language:

english

File:

PDF, 906 KB

english, 2014

39

Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals

Heydari, Mahdi, Marashi, Sayed-Amir, Tusserkani, Ruzbeh, Sadeghi, Mehdi

Journal:

Year:

2014

Language:

english

File:

PDF, 830 KB

english, 2014

40

Reconstruction of a generic metabolic network model of cancer cells

Hadi, Mahdieh, Marashi, Sayed-Amir

Journal:

Molecular BioSystems

Year:

2014

Language:

english

File:

PDF, 2.23 MB

english, 2014

41

FCDECOMP: Decomposition of metabolic networks based on flux coupling relations

Rezvan, Abolfazl, Marashi, Sayed-Amir, Eslahchi, Changiz

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.04 MB

english, 2014

42

Hierarchical organization of fluxes in Escherichia coli metabolic network: Using flux coupling analysis for understanding the physiological properties of metabolic genes

Hosseini, Zhaleh, Marashi, Sayed-Amir

Journal:

Year:

2015

Language:

english

File:

PDF, 889 KB

english, 2015

43

Chemical Cleavage of Mismatches in Heteroduplexes of the rpoB Gene for Detection of Mutations Associated with Resistance of Mycobacterium tuberculosis to Rifampin

Ahmad R. Bahrmand, Sayed M. Marashi,

Journal:

Scandinavian Journal of Infectious Diseases

Year:

2000

Language:

english

File:

PDF, 168 KB

english, 2000

44

On correlated reaction sets and coupled reaction sets in metabolic networks

Marashi, Sayed-Amir, Hosseini, Zhaleh

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2015

Language:

english

File:

PDF, 366 KB

english, 2015

45

Mitochondrial haplogroups and control region polymorphisms in Kaposi's sarcoma patients

Jalilvand, Somayeh, Shoja, Zabihollah, Marashi, Sayed Mahdi, Shahmahmoodi, Shohreh, Safaie-Naraghi, Zahra, Nourijelyani, Keramat, Nesheli, Asgar Baghernejad, Mokhtari-Azad, Talat

Journal:

Journal of Medical Virology

Year:

2015

Language:

english

File:

PDF, 83 KB

english, 2015

46

Protective role of coenzyme Q10 as a means of alleviating the toxicity of aluminum phosphide: An evidence-based review

Marashi, Sayed Mahdi, Majidi, Mohammad, Sadeghian, Mehran, Jafarzadeh, Mostafa, Mohammadi, Sogand, Nasri-Nasrabadi, Zeynab

Journal:

Tzu Chi Medical Journal

Year:

2015

Language:

english

File:

PDF, 206 KB

english, 2015

47

PCD-GED: Protein complex detection considering PPI dynamics based on time series gene expression data

Lakizadeh, Amir, Jalili, Saeed, Marashi, Sayed-Amir

Journal:

Journal of Theoretical Biology

Year:

2015

Language:

english

File:

PDF, 971 KB

english, 2015

48

Evidence for the relationship between the regulatory effects of microRNAs and attack robustness of biological networks

Ahmadi, Mehdi, Jafari, Rahim, Marashi, Sayed-Amir, Farazmand, Ali

Journal:

Computers in Biology and Medicine

Year:

2015

Language:

english

File:

PDF, 2.01 MB

english, 2015

49

Rotavirus VP6 preparations as a non-replicating vaccine candidates

Jalilvand, Somayeh, Marashi, Sayed Mahdi, Shoja, Zabihollah

Journal:

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

50

Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501

Babaei, Parizad, Marashi, Sayed-Amir, Asad, Sedigheh

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

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