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51

Solvent effects on the kinetics and thermodynamics of stacking in poly(cytidylic acid)

Freier, Susan M., Hill, K. O., Dewey, T. G., Marky, Luis A., Breslauer, Kenneth J., Turner, Douglas H.

Journal:

Year:

1981

Language:

english

File:

PDF, 1.57 MB

english, 1981

52

Unfolding and Targeting Thermodynamics of DNA Stem-Loop Motifs

Khutshivilli, Irine, Prislan, Iztok, Lee, Hui-Ting, Lee, Cynthia, Marky, Luis A.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

53

Differential Binding of Ions and Water in the Unfolding of DNA Hairpins

Shikiya, Ronald, Khutsishvili, Irine, Marky, Luis A.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 41 KB

english, 2012

54

Targeting DNA Hairpin Loops with their Partially Complementary Strands

Lee, Hui-Ting, Carr, Carolyn, Siebler, Hollie, Khutsishvilli, Irine, Marky, Luis A.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 36 KB

english, 2010

55

Targeting of a DNA Pseudoknot is Hindered Due to Formation of Base-Triplet Stacks

Reiling, Calliste, Marky, Luis A.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 40 KB

english, 2014

56

Helix-Coil Transitions of Unusual DNA Structures by Measuring the Fluorescence Changes of 2-Aminopurine When Incorporated into DNA

Lee, Hui-Ting, Waters, Lela, Olsen, Chris M., Khutsishvili, Irine, Marky, Luis A.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 39 KB

english, 2009

57

Origins of Netropsin Binding Affinity and Specificity: Correlations of Thermodynamic and Structural Data

Luis A. Marky and Kenneth J. Breslauer

Journal:

Proceedings of the National Academy of Sciences

Year:

1987

Language:

english

File:

PDF, 942 KB

english, 1987

58

Enthalpy--Entropy Compensations in Drug-DNA Binding Studies

Kenneth J. Breslauer, David P. Remeta, Wan-Yin Chou, Robert Ferrante, James Curry, Denise Zaunczkowski, James G. Snyder and Luis A. Marky

Journal:

Proceedings of the National Academy of Sciences

Year:

1987

Language:

english

File:

PDF, 1.02 MB

english, 1987

59

84 PPC measurements of unfolding volumes of DNA stem-loop motifs

Khutshivilli, Irine, Prislan, Iztok, Marky, Luis A.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 65 KB

english, 2013

60

Thermodynamic Characterization of DNA with 3-Deazaadenine and 3-Methyl-3-Deazaadenine Substitutions: The Effect of Placing a Hydrophobic Group in the Minor Groove of DNA

Ganguly, Manjori, Wang, Ruo-Wen, Marky, Luis A., Gold, Barry

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 428 KB

english, 2010

61

Energetic Contributions for the Formation of TAT/TAT, TAT/CGC + , and CGC + /CGC + Base Triplet Stacks

Soto, Ana Maria, Loo, Jacqueline, Marky, Luis A.

Journal:

Journal of the American Chemical Society

Year:

2002

Language:

english

File:

PDF, 266 KB

english, 2002

62

Enthalpic Control of Zinc-Water Acidity in Complexes of Tris(2-aminoethyl)amine and Tris(2-(dimethylamino)ethyl)amine =

Canary, James W., Xu, Jinqi, Castagnetto, Jesus M., Rentzeperis, Dionisios, Marky, Luis A.

Journal:

Journal of the American Chemical Society

Year:

1995

Language:

english

File:

PDF, 380 KB

english, 1995

63

Thermodynamics of dT−dT Base Pair Mismatching in Linear DNA Duplexes and Three-Arm DNA Junctions †

Zhong, Min, Marky, Luis A., Kallenbach, Neville R., Kupke, Donald W.

Journal:

Year:

1997

Language:

english

File:

PDF, 138 KB

english, 1997

64

Ligand Binding to the Hoogsteen-WC Groove of TAT Base Triplets. Thermodynamic Contribution of the Thymine Methyl Groups

Rentzeperis, Dionisios, Marky, Luis A.

Journal:

Journal of the American Chemical Society

Year:

1995

Language:

english

File:

PDF, 301 KB

english, 1995

65

Altering the Electrostatic Potential in the Major Groove: Thermodynamic and Structural Characterization of 7-Deaza-2′-deoxyadenosine:dT Base Pairing in DNA

Kowal, Ewa A., Ganguly, Manjori, Pallan, Pradeep S., Marky, Luis A., Gold, Barry, Egli, Martin, Stone, Michael P.

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 2.69 MB

english, 2011

66

Incorporation of Cationic Chains in the Dickerson−Drew Dodecamer: Correlation of Energetics, Structure, and Ion and Water Binding †

Shikiya, Ronald, Li, Jian-Sen, Gold, Barry, Marky, Luis A.

Journal:

Year:

2005

Language:

english

File:

PDF, 107 KB

english, 2005

67

The role of ion pairs in .alpha. helix stability: two new designed helical peptides

Lyu, Ping Chiang, Marky, Luis A., Kallenbach, Neville R.

Journal:

Journal of the American Chemical Society

Year:

1989

Language:

english

File:

PDF, 291 KB

english, 1989

68

Differential Hydration Thermodynamics of Stereoisomeric DNA−Benzo[ a ]pyrene Adducts Derived from Diol Epoxide Enantiomers with Different Tumorigenic Potentials

Marky, Luis A., Rentzeperis, Dionisios, Luneva, Nataly P., Cosman, Monique, Geacintov, Nicholas E., Kupke, Donald W.

Journal:

Journal of the American Chemical Society

Year:

1996

Language:

english

File:

PDF, 187 KB

english, 1996

69

Thermodynamics of (dG-dC)3 double-helix formation in water and deuterium oxide

Albergo, Diane DePrisco, Marky, Luis A., Breslauer, Kenneth J., Turner, Douglas H.

Journal:

Year:

1981

Language:

english

File:

PDF, 566 KB

english, 1981

70

Energetic and Conformational Contributions to the Stability of Okazaki Fragments †

Soto, Ana Maria, Gmeiner, William H., Marky, Luis A.

Journal:

Year:

2002

Language:

english

File:

PDF, 101 KB

english, 2002

71

Equilibrium Analysis of Ethidium Binding to DNA Containing Base Mismatches and Branches

Hernandez, Luis I., Zhong, Min, Courtney, Scott H., Marky, Luis A., Kallenbach, Neville R.

Journal:

Year:

1994

Language:

english

File:

PDF, 731 KB

english, 1994

72

Differential hydration of dA.cntdot.dT base pairing and dA and dT bulges in deoxyoligonucleotides

Zieba, Krzyztof, Chu, Tram M., Kupke, Donald W., Marky, Luis A.

Journal:

Year:

1991

Language:

english

File:

PDF, 1.17 MB

english, 1991

73

Energetic and Hydration Contributions of the Removal of Methyl Groups From Thymine to Form Uracil in G-Quadruplexes

Olsen, Chris M., Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 185 KB

english, 2009

74

Triple Helix Forming TRIPside Molecules That Target Mixed Purine/Pyrimidine DNA Sequences †

Li, Jian-Sen, Shikiya, Ronald, Marky, Luis A., Gold, Barry

Journal:

Year:

2004

Language:

english

File:

PDF, 245 KB

english, 2004

75

Evidence in Escherichia coli that N3-Methyladenine Lesions Induced by a Minor Groove Binding Methyl Sulfonate Ester Can Be Processed by both Base and Nucleotide Excision Repair †

Shah, Dharini, Kelly, Jack, Zhang, Yi, Dande, Prasad, Martinez, Juan, Ortiz, Gretchen, Fronza, Gilberto, Tran, Huy, Soto, Ana Maria, Marky, Luis, Gold, Barry

Journal:

Year:

2001

Language:

english

File:

PDF, 114 KB

english, 2001

76

Unfolding Thermodynamics of DNA Pyrimidine Triplexes with Different Molecularities

Lee, Hui-Ting, Arciniegas, Santiago, Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 125 KB

english, 2008

77

DNA, RNA, and DNA/RNA Oligomer Duplexes: A Comparative Study of Their Stability, Heat, Hydration, and Mg 2+ Binding Properties

Kankia, Besik I., Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

1999

Language:

english

File:

PDF, 149 KB

english, 1999

78

Differential Hydration of dA.cntdot.dT Base Pairs in Parallel-Stranded DNA Relative to Antiparallel DNA

Rentzeperis, Dionisios, Kupke, Donald W., Marky, Luis A.

Journal:

Year:

1994

Language:

english

File:

PDF, 540 KB

english, 1994

79

Premelting and melting transitions in the d(CGCGAATTCGCG) self-complementary duplex in solution

Patel, Dinshaw J., Kozlowski, Sharon A., Marky, Luis A., Broka, Chris, Rice, Janet A., Itakura, Keiichi, Breslauer, Kenneth J.

Journal:

Year:

1982

Language:

english

File:

PDF, 1.05 MB

english, 1982

80

Introduction of Cationic Charge into DNA Near the Major Groove Edge of a Guanine•Cytosine Base Pair: Characterization of Oligodeoxynucleotides Substituted with 7-Aminomethyl-7-deaza-2′-deoxyguanosine

Ganguly, Manjori, Wang, Ruo-Wen, Marky, Luis A., Gold, Barry

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 165 KB

english, 2009

81

Calorimetric Unfolding of Intramolecular Triplexes: Length Dependence and Incorporation of Single AT → TA Substitutions in the Duplex Domain

Shikiya, Ronald, Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 422 KB

english, 2005

82

Synthesis and characterization of a set of four dodecadeoxyribonucleoside undecaphosphates containing O6-methylguanine opposite adenine, cytosine, guanine, and thymine

Gaffney, Barbara L., Marky, Luis A., Jones, Roger A.

Journal:

Year:

1984

Language:

english

File:

PDF, 739 KB

english, 1984

83

Netropsin binding as a thermodynamic probe of the grooves of parallel DNA

Rentzeperis, Dionisios, Marky, Luis A.

Journal:

Journal of the American Chemical Society

Year:

1993

Language:

english

File:

PDF, 693 KB

english, 1993

84

Calorimetric characterization of parallel-stranded DNA: stability, conformational flexibility, and ion binding

Rentzeperis, Dionisios, Rippe, Karsten, Jovin, Thomas M., Marky, Luis A.

Journal:

Journal of the American Chemical Society

Year:

1992

Language:

english

File:

PDF, 397 KB

english, 1992

85

DNA Intramolecular Triplexes Containing dT → dU Substitutions: Unfolding Energetics and Ligand Binding †

Soto, Ana Maria, Rentzeperis, Dionisios, Shikiya, Ronald, Alonso, Michelle, Marky, Luis A.

Journal:

Year:

2006

Language:

english

File:

PDF, 127 KB

english, 2006

86

Hydration Effects Accompanying the Substitution of Counterions in the Ionic Atmosphere of Poly(rA)·Poly(rU) and Poly(rA)·2Poly(rU) Helices

Buckin, Vitaly, Tran, Huy, Morozov, Victor, Marky, Luis A.

Journal:

Journal of the American Chemical Society

Year:

1996

Language:

english

File:

PDF, 261 KB

english, 1996

87

Extra adenosine stacks into the self-complementary d(CGCAGAATTCGCG) duplex in solution

Patel, Dinshaw J., Kozlowski, Sharon A., Marky, Luis A., Rice, Janet A., Broka, Chris, Itakura, Keiichi, Breslauer, Kenneth J.

Journal:

Year:

1982

Language:

english

File:

PDF, 852 KB

english, 1982

88

A Bridging Water Anchors the Tethered 5-(3-Aminopropyl)-2′-deoxyuridine Amine in the DNA Major Groove Proximate to the N+2 C·G Base Pair: Implications for Formation of Interstrand 5′-GNC-3′ Cross-Links by Nitrogen Mustards †,‡

Wang, Feng, Li, Feng, Ganguly, Manjori, Marky, Luis A., Gold, Barry, Egli, Martin, Stone, Michael P.

Journal:

Year:

2008

Language:

english

File:

PDF, 4.46 MB

english, 2008

89

A Thermodynamic Characterization of the Interaction of a Cationic Copolymer with DNA

Bronich, Tatiana, Kabanov, Alexander V., Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 207 KB

english, 2001

90

Hydration of dA.cntdot.dT polymers: role of water in the thermodynamics of ethidium and propidium intercalation

Marky, Luis A., Macgregor, Robert B.

Journal:

Year:

1990

Language:

english

File:

PDF, 850 KB

english, 1990

91

Mg2+ recognizes the sequence of DNA through its hydration shell

Buckin, Vitaly A., Kankiya, B. I., Rentzeperis, Dionisios, Marky, Luis A.

Journal:

Journal of the American Chemical Society

Year:

1994

Language:

english

File:

PDF, 1.83 MB

english, 1994

92

Thermodynamic Contributions for the Incorporation of GTA Triplets within Canonical TAT/TAT and C + GC/C + GC Base-Triplet Stacks of DNA Triplexes †

Soto, Ana Maria, Marky, Luis A.

Journal:

Year:

2002

Language:

english

File:

PDF, 122 KB

english, 2002

93

Structure of B-DNA with Cations Tethered in the Major Groove †,‡

Moulaei, Tinoush, Maehigashi, Tatsuya, Lountos, George T., Komeda, Seiji, Watkins, Derrick, Stone, Michael P., Marky, Luis A., Li, Jian-sen, Gold, Barry, Williams, Loren Dean

Journal:

Year:

2005

Language:

english

File:

PDF, 1.67 MB

english, 2005

94

DNA Complexes Containing Joined Triplex and Duplex Motifs: Melting Behavior of Intramolecular and Bimolecular Complexes with Similar Sequences

Lee, Hui-Ting, Khutsishvili, Irine, Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 533 KB

english, 2010

95

T-T base mismatches enhance drug binding at the branch site in a four-arm DNA junction

Zhong, Min, Rashes, Michael S., Marky, Luis A., Kallenbach, Neville R.

Journal:

Year:

1992

Language:

english

File:

PDF, 1.73 MB

english, 1992

96

Coupling of sequential transitions in DNA double hairpin: energetics, ion binding, and hydration

Rentzeperis, Dionisios, Kharakoz, Dmitrii P., Marky, Luis A.

Journal:

Year:

1991

Language:

english

File:

PDF, 991 KB

english, 1991

97

Looking for Waldo: A Potential Thermodynamic Signature to DNA Damage

Gold, Barry, Stone, Michael P., Marky, Luis A.

Journal:

Accounts of Chemical Research

Year:

2014

Language:

english

File:

PDF, 2.84 MB

english, 2014

98

Interaction of the dye ethidium bromide with DNA containing guanine repeats

Guo, Qiu, Lu, Min, Marky, Luis A., Kallenbach, Neville R.

Journal:

Year:

1992

Language:

english

File:

PDF, 1.04 MB

english, 1992

99

Differential scanning calorimetry of copper-zinc-superoxide dismutase, the apoprotein, and its zinc-substituted derivatives

Roe, James A., Butler, Alison, Scholler, Diane M., Valentine, Joan Selverstone, Marky, Luis, Breslauer, Kenneth J.

Journal:

Year:

1988

Language:

english

File:

PDF, 1.07 MB

english, 1988

100

Evidence in Escherichia coli that N3-Methyladenine Lesions Induced by a Minor Groove Binding Methyl Sulfonate Ester Can Be Processed by both Base and Nucleotide Excision Repair,

Shah, Dharini, Kelly, Jack, Zhang, Yi, Dande, Prasad, Martinez, Juan, Ortiz, Gretchen, Fronza, Gilberto, Tran, Huy, Soto, Ana Maria, Marky, Luis, Gold, Barry

Journal:

Year:

2001

Language:

english

File:

PDF, 23 KB

english, 2001