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51

Cell-Sorting at the A/P Boundary in the Drosophila Wing Primordium: A Computational Model to Consolidate Observed Non-Local Effects of Hh Signaling

Schilling, Sabine, Willecke, Maria, Aegerter-Wilmsen, Tinri, Cirpka, Olaf A., Basler, Konrad, von Mering, Christian, Shvartsman, Stanislav

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 301 KB

english, 2011

52

Protein Complexes are Central in the Yeast Genetic Landscape

Michaut, Magali, Baryshnikova, Anastasia, Costanzo, Michael, Myers, Chad L., Andrews, Brenda J., Boone, Charles, Bader, Gary D., von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 711 KB

english, 2011

53

The Hedgehog Signaling Pathway: Where Did It Come From?

Hausmann, George, von Mering, Christian, Basler, Konrad, Scott, Matthew P.

Journal:

Year:

2009

Language:

english

File:

PDF, 530 KB

english, 2009

54

Quantitative Protein Localization Signatures Reveal an Association between Spatial and Functional Divergences of Proteins

Loo, Lit-Hsin, Laksameethanasan, Danai, Tung, Yi-Ling, von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.70 MB

english, 2014

55

Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria

Stecher, Bärbel, Chaffron, Samuel, Käppeli, Rina, Hapfelmeier, Siegfried, Freedrich, Susanne, Weber, Thomas C., Kirundi, Jorum, Suar, Mrutyunjay, McCoy, Kathy D., von Mering, Christian, Macpherson, An

Journal:

Year:

2010

Language:

english

File:

PDF, 2.47 MB

english, 2010

56

Network Evolution: Rewiring and Signatures of Conservation in Signaling

Sun, Mark G. F., Sikora, Martin, Costanzo, Michael, Boone, Charles, Kim, Philip M., von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 566 KB

english, 2012

57

Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes

Takeuchi, Yayoi, Chaffron, Samuel, Salcher, Michaela M., Shimizu-Inatsugi, Rie, Kobayashi, Masaki J., Diway, Bibian, von Mering, Christian, Pernthaler, Jakob, Shimizu, Kentaro K.

Journal:

Systematic and Applied Microbiology

Year:

2015

Language:

english

File:

PDF, 2.18 MB

english, 2015

58

STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data

Szklarczyk, Damian, Santos, Alberto, von Mering, Christian, Jensen, Lars Juhl, Bork, Peer, Kuhn, Michael

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.38 MB

english, 2015

59

SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles

Franceschini, Andrea, Lin, Jianyi, von Mering, Christian, Jensen, Lars Juhl

Journal:

Year:

2015

Language:

english

File:

PDF, 180 KB

english, 2015

60

Sa1872 EBI2 Plays a Role in the Development of Intestinal Lymphoid Structures

Wyss, Annika, Raselli, Tina, Schmidt, Sebastian, Atrott, Kirstin, Frey-Wagner, Isabelle, von Mering, Christian, Sailer, Andreas W., Rogler, Gerhard, Misselwitz, Benjamin

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 132 KB

english, 2016

61

Bioinformatics: From Molecules to Systems || Comparative Analysis of Environmental Sequences: Potential and Challenges

Konrad U. Foerstner, Christian von Mering and Peer Bork

Journal:

Philosophical Transactions Biological Sciences

Year:

2006

Language:

english

File:

PDF, 1.31 MB

english, 2006

62

Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details

Feigelman, Rounak, Kahlert, Christian R., Baty, Florent, Rassouli, Frank, Kleiner, Rebekka L., Kohler, Philipp, Brutsche, Martin H., von Mering, Christian

Journal:

Year:

2017

Language:

english

File:

PDF, 1.91 MB

english, 2017

63

A family of interaction-adjusted indices of community similarity

Schmidt, Thomas Sebastian Benedikt, Matias Rodrigues, João Frederico, von Mering, Christian

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 5.54 MB

english, 2017

64

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper

Huerta-Cepas, Jaime, Forslund, Kristoffer, Pedro Coelho, Luis, Szklarczyk, Damian, Juhl Jensen, Lars, von Mering, Christian, Bork, Peer

Journal:

Molecular Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 996 KB

english, 2017

65

MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis

Rodrigues, João F Matias, Schmidt, SB Thomas, Tackmann, Janko, von Mering, Christian

Journal:

Year:

2017

Language:

english

File:

PDF, 1.03 MB

english, 2017

66

Preventive Trichuris suis ova (TSO) treatment protects immunocompetent rabbits from DSS colitis but may be detrimental under conditions of immunosuppression

Leonardi, Irina, Gerstgrasser, Alexandra, Schmidt, Thomas S. B., Nicholls, Flora, Tewes, Bernhard, Greinwald, Roland, von Mering, Christian, Rogler, Gerhard, Frey-Wagner, Isabelle

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 7.43 MB

english, 2017

67

A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers

Şenbabaoğlu, Yasin, Sümer, Selçuk Onur, Sánchez-Vega, Francisco, Bemis, Debra, Ciriello, Giovanni, Schultz, Nikolaus, Sander, Chris, von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 7.43 MB

english, 2016

68

High Confidence Prediction of Essential Genes in Burkholderia Cenocepacia

Juhas, Mario, Stark, Manuel, von Mering, Christian, Lumjiaktase, Puthapoom, Crook, Derrick W., Valvano, Miguel A., Eberl, Leo, Battista, John R.

Journal:

Year:

2012

Language:

english

File:

PDF, 554 KB

english, 2012

69

A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation

Trachana, Kalliopi, Forslund, Kristoffer, Larsson, Tomas, Powell, Sean, Doerks, Tobias, von Mering, Christian, Bork, Peer, Anisimova, Maria

Journal:

Year:

2014

Language:

english

File:

PDF, 2.10 MB

english, 2014

70

Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling

Lun, Xiao-Kang, Szklarczyk, Damian, Gábor, Attila, Dobberstein, Nadine, Zanotelli, Vito Riccardo Tomaso, Saez-Rodriguez, Julio, von Mering, Christian, Bodenmiller, Bernd

Journal:

Year:

2019

File:

PDF, 13.15 MB

2019

71

Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies

Heller, Davide, Szklarczyk, Damian, Mering, Christian von

Journal:

BMC Bioinformatics

Year:

2019

File:

PDF, 1.12 MB

2019

72

STRING and STITCH: known and predicted interactions between proteins and chemicals

Jensen, Lars, Kuhn, Michael, Stark, Manuel, Chaffron, Samuel, von Mering, Christian, Bork, Peer

Journal:

Bioentrepreneur

Year:

2008

Language:

english

File:

PDF, 3.54 MB

english, 2008

73

Rapid Inference of Direct Interactions in Large-Scale Ecological Networks from Heterogeneous Microbial Sequencing Data

Tackmann, Janko, Matias Rodrigues, João Frederico, von Mering, Christian

Journal:

Year:

2019

Language:

english

File:

PDF, 2.41 MB

english, 2019

74

Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity

Maistrenko, Oleksandr M., Mende, Daniel R., Luetge, Mechthild, Hildebrand, Falk, Schmidt, Thomas S. B., Li, Simone S., Rodrigues, JoÃ£o F. Matias, von Mering, Christian, Pedro Coelho, Luis, Huerta-Cep

Journal:

The ISME Journal

Year:

2020

File:

PDF, 2.98 MB

2020

75

Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network

Kahraman, Abdullah, Karakulak, TÃ¼lay, Szklarczyk, Damian, von Mering, Christian

Journal:

Scientific Reports

Year:

2020

File:

PDF, 5.58 MB

2020

76

Massive pulmonary embolism in a COVID-19 patient: a case report

Sang, Charlie J, Heindl, Brittain, Von Mering, Gregory, Rajapreyar, Indranee, Deharo, Pierre, Kanakakis, John, Rampat, Rajiv, Camm, Christian Fielder, Thomson, Ross

Journal:

European Heart Journal - Case Reports

Year:

2020

File:

PDF, 603 KB

2020

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