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51

DOM-fold: A structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding domain

Hua Cheng, Nick V. Grishin

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 1.38 MB

english, 2005

52

COG3926 and COG5526: A tale of two new lysozyme-like protein families

Jimin Pei, Nick V. Grishin

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 1.00 MB

english, 2005

53

Site-2 protease regulated intramembrane proteolysis: Sequence homologs suggest an ancient signaling cascade

Lisa N. Kinch, Krzysztof Ginalski, Nick V. Grishin

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 854 KB

english, 2006

54

Longin-like folds identified in CHiPS and DUF254 proteins: Vesicle trafficking complexes conserved in eukaryotic evolution

Lisa N. Kinch, Nick V. Grishin

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 558 KB

english, 2006

55

Optimization of linear disorder predictors yields tight association between crystallographic disorder and hydrophobicity

Nathan B. Holladay, Lisa N. Kinch, Nick V. Grishin

Journal:

Protein Science

Year:

2007

Language:

english

File:

PDF, 647 KB

english, 2007

56

Breaking the singleton of germination protease

Jimin Pei, Nick V. Grishin

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 811 KB

english, 2002

57

Side-chain modeling with an optimized scoring function

Shide Liang, Nick V. Grishin

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 230 KB

english, 2002

58

Thermolysin and mitochondrial processing peptidase: How far structure—functional convergence goes

Nick V. Grishin, Kira S. Makarova

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 1.60 MB

english, 1999

59

The α-subunit of protein prenyltransferases is a member of the tetratricopeptide repeat family

Hong Zhang, Nick V Grishin

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 1.45 MB

english, 1999

60

Cysteine-rich domains related to Frizzled receptors and Hedgehog-interacting proteins

Jimin Pei, Nick V. Grishin

Journal:

Protein Science

Year:

2012

Language:

english

File:

PDF, 1.58 MB

english, 2012

61

The ABC transporters in Candidatus Liberibacter asiaticus

Wenlin Li, Qian Cong, Jimin Pei, Lisa N. Kinch, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 2.07 MB

english, 2012

62

Genetic Defects in Surfactant Protein A2 Are Associated with Pulmonary Fibrosis and Lung Cancer

Yongyu Wang, Phillip J. Kuan, Chao Xing, Jennifer T. Cronkhite, Fernando Torres, Randall L. Rosenblatt, J. Michael DiMaio, Lisa N. Kinch, Nick V. Grishin, Christine Kim Garcia

Journal:

The American Journal of Human Genetics

Year:

2009

Language:

english

File:

PDF, 692 KB

english, 2009

63

Succination of Keap1 and Activation of Nrf2-Dependent Antioxidant Pathways in FH-Deficient Papillary Renal Cell Carcinoma Type 2

Lisa Kinch, Nick V. Grishin, James Brugarolas

Journal:

Year:

2011

Language:

english

File:

PDF, 341 KB

english, 2011

64

Unexpected diversity in Shisa-like proteins suggests the importance of their roles as transmembrane adaptors

Jimin Pei, Nick V. Grishin

Journal:

Cellular Signalling

Year:

2012

Language:

english

File:

PDF, 3.14 MB

english, 2012

65

Sequences and topology: from methods to meaning

Sarah A Teichmann, Nick V Grishin

Journal:

Current Opinion in Structural Biology

Year:

2006

Language:

english

File:

PDF, 73 KB

english, 2006

66

Sequences and topology: from genome structure to protein structure

Sarah A Teichmann, Nick V Grishin

Journal:

Current Opinion in Structural Biology

Year:

2008

Language:

english

File:

PDF, 89 KB

english, 2008

67

Discrete–continuous duality of protein structure space

Ruslan I Sadreyev, Bong-Hyun Kim, Nick V Grishin

Journal:

Current Opinion in Structural Biology

Year:

2009

Language:

english

File:

PDF, 1.83 MB

english, 2009

68

Sequences and topology: evolution of proteins and evolution of computational approaches

Sarah A Teichmann, Nick Grishin

Journal:

Current Opinion in Structural Biology

Year:

2010

Language:

english

File:

PDF, 75 KB

english, 2010

69

Structurally Analogous Proteins Do Exist!

S.Sri Krishna, Nick V Grishin

Journal:

Year:

2004

Language:

english

File:

PDF, 112 KB

english, 2004

70

Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism

Nian Huang, Leonardo Sorci, Xuejun Zhang, Chad A. Brautigam, Xiaoqing Li, Nadia Raffaelli, Giulio Magni, Nick V. Grishin, Andrei L. Osterman, Hong Zhang

Journal:

Year:

2008

Language:

english

File:

PDF, 2.32 MB

english, 2008

71

DCC proteins: a novel family of thiol-disulfide oxidoreductases

Krzysztof Ginalski, Lisa Kinch, Leszek Rychlewski, Nick V Grishin

Journal:

Trends in Biochemical Sciences

Year:

2004

Language:

english

File:

PDF, 177 KB

english, 2004

72

Raptor protein contains a caspase-like domain

Krzysztof Ginalski, Hong Zhang, Nick V. Grishin

Journal:

Trends in Biochemical Sciences

Year:

2004

Language:

english

File:

PDF, 102 KB

english, 2004

73

Evolution of protein structures and functions

Lisa N Kinch, Nick V Grishin

Journal:

Current Opinion in Structural Biology

Year:

2002

Language:

english

File:

PDF, 259 KB

english, 2002

74

Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases

Jimin Pei, Nick V Grishin

Journal:

Trends in Biochemical Sciences

Year:

2001

Language:

english

File:

PDF, 54 KB

english, 2001

75

Sec61β – a component of the archaeal protein secretory system

Lisa N. Kinch, Milton H. Saier, Jr, Nick V. Grishin

Journal:

Trends in Biochemical Sciences

Year:

2002

Language:

english

File:

PDF, 36 KB

english, 2002

76

The R3H motif: a domain that binds single-stranded nucleic acids

Journal:

Trends in Biochemical Sciences

Year:

1998

Language:

english

File:

PDF, 510 KB

english, 1998

77

Structure and Mechanism of Homoserine Kinase: Prototype for the GHMP Kinase Superfamily

Tianjun Zhou, Matthew Daugherty, Nick V. Grishin, Andrei L. Osterman, Hong Zhang

Journal:

Year:

2000

Language:

english

File:

PDF, 1.39 MB

english, 2000

78

Crystal Structures of E. coli Nicotinate Mononucleotide Adenylyltransferase and Its Complex with Deamido-NAD

Hong Zhang, Tianjun Zhou, Oleg Kurnasov, Sara Cheek, Nick V Grishin, Andrei Osterman

Journal:

Year:

2002

Language:

english

File:

PDF, 954 KB

english, 2002

79

Crystal Structure of Human Riboflavin Kinase Reveals a β Barrel Fold and a Novel Active Site Arch

Subramanian Karthikeyan, Qingxian Zhou, Faika Mseeh, Nick V. Grishin, Andrei L. Osterman, Hong Zhang

Journal:

Year:

2003

Language:

english

File:

PDF, 656 KB

english, 2003

80

Considering scores between unrelated proteins in the search database improves profile comparison

Ruslan I Sadreyev, Yong Wang, Nick V Grishin

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.21 MB

english, 2009

81

Estimates of statistical significance for comparison of individual positions in multiple sequence alignments

Ruslan I Sadreyev, Nick V Grishin

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 1.05 MB

english, 2004

82

SCOPmap: Automated assignment of protein structures to evolutionary superfamilies

Sara Cheek, Yuan Qi, S Sri Krishna, Lisa N Kinch, Nick V Grishin

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 4.24 MB

english, 2004

83

PALSSE: A program to delineate linear secondary structural elements from protein structures

Indraneel Majumdar, SSri Krishna, Nick V Grishin

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 2.52 MB

english, 2005

84

A comprehensive system for evaluation of remote sequence similarity detection

Yuan Qi, Ruslan I Sadreyev, Yong Wang, Bong-Hyun Kim, Nick V Grishin

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.17 MB

english, 2007

85

Genome trees constructed using five different approaches suggest new major bacterial clades

Yuri I Wolf, Igor B Rogozin, Nick V Grishin, Roman L Tatusov, Eugene V Koonin

Journal:

BMC Evolutionary Biology

Year:

2001

Language:

english

File:

PDF, 1.99 MB

english, 2001

86

Reconstruction of ancestral protein sequences and its applications

Wei Cai, Jimin Pei, Nick V Grishin

Journal:

BMC Evolutionary Biology

Year:

2004

Language:

english

File:

PDF, 1.20 MB

english, 2004

87

Evolution of the Regulators of G-Protein Signaling Multigene Family in Mouse and Human

David A. Sierra, Debra J. Gilbert, Deborah Householder, Nick V. Grishin, Kan Yu, Pallavi Ukidwe, Sheryll A. Barker, Wei He, Theodore G. Wensel, Glen Otero, Greg Brown, Neal G. Copeland, Nancy A. Jenki

Journal:

Year:

2002

Language:

english

File:

PDF, 562 KB

english, 2002

88

Phosphatidylinositol Phosphate Kinase: A Link between Protein Kinase and Glutathione Synthase Folds

Nick V. Grishin

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 481 KB

english, 1999

89

The Zn-peptidase superfamily: functional convergence after evolutionary divergence

Kira S. Makarova, Nick V. Grishin

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 577 KB

english, 1999

90

Crystal structure of human ornithine decarboxylase at 2.1 å resolution: structural insights to antizyme binding

Jeffrey J Almrud, Marcos A Oliveira, Andrew D Kern, Nick V Grishin, Margaret A Phillips, Marvin L Hackert

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 685 KB

english, 2000

91

C-terminal domains of Escherichia coli topoisomerase I belong to the zinc-ribbon superfamily

Nick V. Grishin

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 894 KB

english, 2000

92

MH1 domain of Smad is a degraded homing endonuclease

Nick V. Grishin

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 407 KB

english, 2001

93

Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily

James O. Wrabl, Nick V. Grishin

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 726 KB

english, 2001

94

Fold Change in Evolution of Protein Structures

Nick V. Grishin

Journal:

Journal of Structural Biology

Year:

2001

Language:

english

File:

PDF, 2.49 MB

english, 2001

95

Identification of the Acyltransferase that Octanoylates Ghrelin, an Appetite-Stimulating Peptide Hormone

Jing Yang, Michael S. Brown, Guosheng Liang, Nick V. Grishin, Joseph L. Goldstein

Journal:

Year:

2008

Language:

english

File:

PDF, 1.01 MB

english, 2008

96

Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels

Masato Kato, Tina W. Han, Shanhai Xie, Kevin Shi, Xinlin Du, Leeju C. Wu, Hamid Mirzaei, Elizabeth J. Goldsmith, Jamie Longgood, Jimin Pei, Nick V. Grishin, Douglas E. Frantz, Jay W. Schneider, She Ch

Journal:

Year:

2012

Language:

english

File:

PDF, 2.04 MB

english, 2012

97

Membrane Protein Structure Predictions for Exploration

Nick V. Grishin

Journal:

Year:

2012

Language:

english

File:

PDF, 57 KB

english, 2012

98

BOF: a novel family of bacterial OB-fold proteins

Krzysztof Ginalski, Lisa Kinch, Leszek Rychlewski, Nick V. Grishin

Journal:

Year:

2004

Language:

english

File:

PDF, 451 KB

english, 2004

99

Ubiquitin-Induced Oligomerization of the RNA Sensors RIG-I and MDA5 Activates Antiviral Innate Immune Response

Xiaomo Jiang, Lisa N. Kinch, Chad A. Brautigam, Xiang Chen, Fenghe Du, Nick V. Grishin, Zhijian J. Chen

Journal:

Year:

2012

Language:

english

File:

PDF, 2.25 MB

english, 2012

100

Three-dimensional Structure of the rSly1 N-terminal Domain Reveals a Conformational Change Induced by Binding to Syntaxin 5

Demet Araç, Irina Dulubova, Jimin Pei, Iryna Huryeva, Nick V. Grishin, Josep Rizo

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.01 MB

english, 2005