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51

Rapid Colorimetric Detection of Genome Evolution in SCRaMbLEd Synthetic Saccharomyces cerevisiae Strains

Wightman, Elizabeth L. I., Kroukamp, Heinrich, Pretorius, Isak S., Paulsen, Ian T., Nevalainen, Helena K. M.

Journal:

Year:

2020

File:

PDF, 3.46 MB

2020

52

10.1038/80235

Nelson, Karen E., Paulsen, Ian T., Heidelberg, John F., Fraser, Claire M.

Journal:

Nature Biotechnology

Year:

2000

Language:

english

File:

PDF, 113 KB

english, 2000

53

The Genomic Sequence of Pseudomonas fluorescens Pf-5: Insights Into Biological Control

Loper, Joyce E., Kobayashi, Donald Y., Paulsen, Ian T.

Journal:

Year:

2007

Language:

english

File:

PDF, 222 KB

english, 2007

54

Life in the dark: metagenomic evidence that a microbial slime community is driven by inorganic nitrogen metabolism

Tetu, Sasha G, Breakwell, Katy, Elbourne, Liam D H, Holmes, Andrew J, Gillings, Michael R, Paulsen, Ian T

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 2.28 MB

english, 2013

55

Topology, structure and evolution of two families of proteins involved in antibiotic and antiseptic resistance in eukaryotes and prokaryotes â an analysis

Paulsen, Ian T., Skurray, Ronald A.

Journal:

Year:

1993

Language:

english

File:

PDF, 4.50 MB

english, 1993

56

High-Throughput Phenotypic Characterization of Pseudomonas aeruginosa Membrane Transport Genes

Johnson, Daniel A., Tetu, Sasha G., Phillippy, Katherine, Chen, Joan, Ren, Qinghu, Paulsen, Ian T., Richardson, Paul M.

Journal:

Year:

2008

Language:

english

File:

PDF, 378 KB

english, 2008

57

Global Gene Expression Profile of Acinetobacter baumannii During Bacteremia

Murray, Gerald L., Tsyganov, Kirill, Kostoulias, Xenia P., Bulach, Dieter M., Powell, David, Creek, Darren J., Boyce, John D., Paulsen, Ian T., Peleg, Anton Y.

Journal:

The Journal of Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 3.11 MB

english, 2017

58

Adherence and motility characteristics of clinical Acinetobacter baumannii isolates

Bart A. Eijkelkamp, Uwe H. Stroeher, Karl A. Hassan, Michael S. Papadimitrious, Ian T. Paulsen, Melissa H. Brown

Journal:

FEMS Microbiology Letters

Year:

2011

Language:

english

File:

PDF, 214 KB

english, 2011

59

A family of Gram-negative bacterial outer membrane factors that function in the export of proteins, carbohydrates, drugs and heavy metals from Gram-negative bacteria

Ian T Paulsen, Jay H Park, Peter S Choi, Milton H Saier Jr.

Journal:

FEMS Microbiology Letters

Year:

1997

Language:

english

File:

PDF, 1.06 MB

english, 1997

60

[Methods in Molecular Biology] Environmental Microbiology Volume 1096 || Metagenomics Using Next-Generation Sequencing

Paulsen, Ian T., Holmes, Andrew J.

Year:

2014

Language:

english

File:

PDF, 234 KB

english, 2014

61

A genome-scale metabolic flux model of Escherichia coli K–12 derived from the EcoCyc database

Weaver, Daniel S, Keseler, Ingrid M, Mackie, Amanda, Paulsen, Ian T, Karp, Peter D

Journal:

BMC Systems Biology

Year:

2014

Language:

english

File:

PDF, 1.45 MB

english, 2014

62

Determination of native capsular polysaccharide structures of Streptococcus pneumoniae serotypes 39, 42, and 47F and comparison to genetically or serologically related strains

Petersen, Bent O., Meier, Sebastian, Paulsen, Berit Smestad, Redondo, Antonio R., Skovsted, Ian C.

Journal:

Carbohydrate Research

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

63

The EcoCyc Database

Weaver, Daniel, Gama-Castro, Socorro, Muñiz-Rascado, Luis, Gunsalus, Robert, Krummenacker, Markus, Fulcher, Carol, Weerasinghe, Deepika, Kothari, Anamika, Paulsen, Ian, Weiss, Verena, Huerta, Araceli

Journal:

Year:

2014

Language:

english

File:

PDF, 278 KB

english, 2014

64

Impact of DNA damaging agents on genome-wide transcriptional profiles in two marine Synechococcus species

Tetu, Sasha G., Johnson, Daniel A., Varkey, Deepa, Phillippy, Katherine, Stuart, Rhona K., Dupont, Chris L., Hassan, Karl A., Palenik, Brian, Paulsen, Ian T.

Journal:

Frontiers in Microbiology

Year:

2013

Language:

english

File:

PDF, 4.03 MB

english, 2013

65

Ecology and Evolution of the Human Microbiota: Fire, Farming and Antibiotics

Gillings, Michael, Paulsen, Ian, Tetu, Sasha

Journal:

Year:

2015

Language:

english

File:

PDF, 791 KB

english, 2015

66

Subsurface Stappia: Success Through Defence, Specialisation and Putative Pressure-Dependent Carbon Fixation

Vick, Silas H. W., Greenfield, Paul, Willows, Robert D., Tetu, Sasha G., Midgley, David J., Paulsen, Ian T.

Journal:

Microbial Ecology

Year:

2019

File:

PDF, 1.81 MB

2019

67

Application of Transposon Insertion Sequencing to Agricultural Science

Fabian, Belinda K., Tetu, Sasha G., Paulsen, Ian T.

Journal:

Frontiers in Plant Science

Year:

2020

File:

PDF, 916 KB

2020

68

Corrigendum: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

Paulsen, Ian T, Press, Caroline M, Ravel, Jacques, Kobayashi, Donald Y, Myers, Garry S A, Mavrodi, Dmitri V, DeBoy, Robert T, Seshadri, Rekha, Ren, Qinghu, Madupu, Ramana

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 158 KB

english, 2006

69

Multidrug efflux pumps and resistance: regulation and evolution

Journal:

Current Opinion in Microbiology

Year:

2003

Language:

english

File:

PDF, 208 KB

english, 2003

70

Regulation of the aceI multidrug efflux pump gene in Acinetobacter baumannii

Liu, Qi, Hassan, Karl A, Ashwood, Heather E, Gamage, Hasinika K A H, Li, Liping, Mabbutt, Bridget C, Paulsen, Ian T

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2018

Language:

english

File:

PDF, 1.09 MB

english, 2018

71

Complete Genome Sequence of the Multiresistant Taxonomic Outlier Pseudomonas aeruginosa PA7

Roy, Paul H., Tetu, Sasha G., Larouche, André, Elbourne, Liam, Tremblay, Simon, Ren, Qinghu, Dodson, Robert, Harkins, Derek, Shay, Ryan, Watkins, Kisha, Mahamoud, Yasmin, Paulsen, Ian T., Ahmed, Niyaz

Journal:

Year:

2010

Language:

english

File:

PDF, 512 KB

english, 2010

72

Disruption of Transporters Affiliated with Enantio-Pyochelin Biosynthesis Gene Cluster of Pseudomonas protegens Pf-5 Has Pleiotropic Effects

Lim, Chee Kent, Penesyan, Anahit, Hassan, Karl A., Loper, Joyce E., Paulsen, Ian T., Cascales, Eric

Journal:

Year:

2016

Language:

english

File:

PDF, 758 KB

english, 2016

73

Positive-feedback, ratiometric biosensor expression improves high-throughput metabolite-producer screening efficiency in yeast

Williams, Thomas C., Xu, Xin, Ostrowski, Martin, Pretorius, Isak S., Paulsen, Ian T.

Journal:

Synthetic Biology

Year:

2017

Language:

english

File:

PDF, 953 KB

english, 2017

74

Markerless motion tracking and correction for PET, MRI, and simultaneous PET/MRI

Slipsager, Jakob M., Ellegaard, Andreas H., Glimberg, Stefan L., Paulsen, Rasmus R., Tisdall, M. Dylan, Wighton, Paul, van der Kouwe, André, Marner, Lisbeth, Henriksen, Otto M., Law, Ian, Olesen, Olin

Journal:

Year:

2019

Language:

english

File:

PDF, 2.30 MB

english, 2019

75

Short-chain diamines are the physiological substrates of PACE family efflux pumps

Hassan, Karl A., Naidu, Varsha, Edgerton, Jacob R., Mettrick, Karla A., Liu, Qi, Fahmy, Leila, Li, Liping, Jackson, Scott M., Ahmad, Irshad, Sharples, David, Henderson, Peter J. F., Paulsen, Ian T.

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 1.14 MB

2019

76

Analysis of a transfer region from the staphylococcal conjugative plasmid pSK41

Firth, Neville, Ridgway, Karyn P., Byrne, Mary E., Fink, Peter D., Johnson, Luke, Paulsen, Ian T., Skurray, Ronald A.

Journal:

Year:

1993

Language:

english

File:

PDF, 1.79 MB

english, 1993

77

Structural determination of Streptococcus pneumoniae repeat units in serotype 41A and 41F capsular polysaccharides to probe gene functions in the corresponding capsular biosynthetic loci

Petersen, Bent O., Skovsted, Ian C., Paulsen, Berit Smestad, Redondo, Antonio R., Meier, Sebastian

Journal:

Carbohydrate Research

Year:

2014

Language:

english

File:

PDF, 580 KB

english, 2014

78

Large-Scale Comparative Genomic Analyses of Cytoplasmic Membrane Transport Systems in Prokaryotes

Ren, Qinghu, Paulsen, Ian T.

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2007

Language:

english

File:

PDF, 811 KB

english, 2007

79

Genomic Analysis Reveals Multiple [FeFe] Hydrogenases and Hydrogen Sensors Encoded by Treponemes from the H₂-Rich Termite Gut

Nicholas R. Ballor, Ian Paulsen and Jared R. Leadbetter

Journal:

Microbial Ecology

Year:

2012

Language:

english

File:

PDF, 2.76 MB

english, 2012

80

Genome-based evolutionary history of Pseudomonas spp

Hesse, Cedar, Schulz, Frederik, Bull, Carolee T., Shaffer, Brenda T., Yan, Qing, Shapiro, Nicole, Hassan, Karl A., Varghese, Neha, Elbourne, Liam D. H., Paulsen, Ian T., Kyrpides, Nikos, Woyke, Tanja,

Journal:

Environmental Microbiology

Year:

2018

Language:

english

File:

PDF, 1.04 MB

english, 2018

81

The Transcriptomic Signature of Tigecycline in Acinetobacter baumannii

Li, Liping, Hassan, Karl A., Tetu, Sasha G., Naidu, Varsha, Pokhrel, Alaska, Cain, Amy K., Paulsen, Ian T.

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 1.23 MB

2020

82

Multidrug Resistance Plasmid pSK108 from Coagulase-Negative Staphylococci; Relationships to Staphylococcus aureus qacC Plasmids

Amornrut Leelaporn, Neville Firth, Ian T. Paulsen, Anusha Hettiaratchi, Ronald A. Skurray

Journal:

Year:

1995

File:

PDF, 275 KB

1995

83

Application of Exonuclease III-Aided Target Recycling in Flow Cytometry: DNA Detection Sensitivity Enhanced by Orders of Magnitude

Lu, Jie, Paulsen, Ian T., Jin, Dayong

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 1.55 MB

english, 2013

84

Malposition of a Central Venous Catheter in the Right Main Pulmonary Artery Detected by Transesophageal Echocardiography

Gu, Xiaoyan, Paulsen, Walter, Tisnado, Jaime, He, Yihua, Li, Zhian, Nixon, J.V. (Ian)

Journal:

Journal of the American Society of Echocardiography

Year:

2009

Language:

english

File:

PDF, 493 KB

english, 2009

85

Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiae

Espinosa, Monica I., Gonzalez-Garcia, Ricardo A., Valgepea, Kaspar, Plan, Manuel R., Scott, Colin, Pretorius, Isak S., Marcellin, Esteban, Paulsen, Ian T., Williams, Thomas C.

Journal:

Nature Communications

Year:

2020

File:

PDF, 1.27 MB

2020

86

Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic

Daniel H Haft, Ian T Paulsen, Naomi Ward, Jeremy D Selengut

Journal:

Year:

2006

Language:

english

File:

PDF, 1.21 MB

english, 2006

87

The SMR family: a novel family of multidrug efflux proteins involved with the efflux of lipophilic drugs

Ian T. Paulsen, Ronald A. Skurray, Roland Tam, Milton H. Saier Jr, Raymond J. Turner, Joel H. Weiner, Edward B. Goldberg, Leonas L. Grinius

Journal:

Molecular Microbiology

Year:

1996

Language:

english

File:

PDF, 954 KB

english, 1996

88

Whole-genome microarray analyses of Synechococcus–Vibrio interactions

Vera Tai, Ian T. Paulsen, Katherine Phillippy, D. Aaron Johnson, Brian Palenik

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 317 KB

english, 2009

89

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

Heidelberg, John F., Paulsen, Ian T., Nelson, Karen E., Gaidos, Eric J., Nelson, William C., Read, Timothy D., Eisen, Jonathan A., Seshadri, Rekha, Ward, Naomi, Methe, Barbara

Journal:

Nature Biotechnology

Year:

2002

Language:

english

File:

PDF, 452 KB

english, 2002

90

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

Read, Timothy D., Peterson, Scott N., Tourasse, Nicolas, Baillie, Les W., Paulsen, Ian T., Nelson, Karen E., Tettelin, Hervé, Fouts, Derrick E., Eisen, Jonathan A., Gill, Steven R., Holtzapple, Erik K

Journal:

Year:

2003

Language:

english

File:

PDF, 1.46 MB

english, 2003

91

[Methods in Molecular Biology] Environmental Microbiology Volume 1096 || Stable Isotope Probing to Study Functional Components of Complex Microbial Ecosystems

Paulsen, Ian T., Holmes, Andrew J.

Year:

2014

Language:

english

File:

PDF, 133 KB

english, 2014

92

A Sample-to-Sequence Protocol for Genus Targeted Transcriptomic Profiling: Application to Marine Synechococcus

Pitt, Frances D., Millard, Andrew, Ostrowski, Martin, Dervish, Suat, Mazard, Sophie, Paulsen, Ian T., Zubkov, Mikhail V., Scanlan, David J.

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 1.35 MB

english, 2016

93

Unicellular Cyanobacteria Are Important Components of Phytoplankton Communities in Australia’s Northern Oceanic Ecoregions

Moore, Lisa R., Huang, Taotao, Ostrowski, Martin, Mazard, Sophie, Kumar, Sheemal S., Gamage, Hasinika K. A. H., Brown, Mark V., Messer, Lauren F., Seymour, Justin R., Paulsen, Ian T.

Journal:

Frontiers in Microbiology

Year:

2019

File:

PDF, 5.43 MB

2019

94

Markerless motion tracking and correction for PET, MRI, and simultaneous PET/MRI

Slipsager, Jakob M., Ellegaard, Andreas H., Glimberg, Stefan L., Paulsen, Rasmus R., Tisdall, M. Dylan, Wighton, Paul, van der Kouwe, André, Marner, Lisbeth, Henriksen, Otto M., Law, Ian, Olesen, Olin

Journal:

Year:

2019

File:

PDF, 2.30 MB

2019

95

Characterizing the Mechanism of Action of an Ancient Antimicrobial, Manuka Honey, against Pseudomonas aeruginosa Using Modern Transcriptomics

Bouzo, Daniel, Cokcetin, Nural N., Li, Liping, Ballerin, Giulia, Bottomley, Amy L., Lazenby, James, Whitchurch, Cynthia B., Paulsen, Ian T., Hassan, Karl A., Harry, Elizabeth J., Van Laar, Tricia A.

Journal:

Year:

2020

File:

PDF, 4.17 MB

2020

96

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

Heidelberg, John F, Seshadri, Rekha, Haveman, Shelley A, Hemme, Christopher L, Paulsen, Ian T, Kolonay, James F, Eisen, Jonathan A, Ward, Naomi, Methe, Barbara, Brinkac, Lauren M

Journal:

Nature Biotechnology

Year:

2004

Language:

english

File:

PDF, 175 KB

english, 2004

97

Microbial genome analyses: comparative transport capabilities in eighteen prokaryotes

Ian T Paulsen, Lily Nguyen, Marek K Sliwinski, Ralf Rabus, Milton H Saier Jr

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 432 KB

english, 2000

98

Community-acquired Acinetobacter baumannii : clinical characteristics, epidemiology and pathogenesis

Dexter, Carina, Murray, Gerald L, Paulsen, Ian T, Peleg, Anton Y

Journal:

Expert Review of Anti-infective Therapy

Year:

2015

Language:

english

File:

PDF, 423 KB

english, 2015

99

Roles of DHA2 Family Transporters in Drug Resistance and Iron Homeostasis in Acinetobacter spp.

Hassan, Karl A., Brzoska, Anthony J., Wilson, Neil L., Eijkelkamp, Bart A., Brown, Melissa H., Paulsen, Ian T.

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2011

Language:

english

File:

PDF, 407 KB

english, 2011

100

Genomics and the evolution of antibiotic resistance

Gillings, Michael R., Paulsen, Ian T., Tetu, Sasha G.

Journal:

Annals of the New York Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 368 KB

english, 2016

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