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51

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data

Ernesto Picardi, Flavio Mignone, Graziano Pesole

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 336 KB

english, 2009

52

PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text

Yuri Pirola, Raffaella Rizzi, Ernesto Picardi, Graziano Pesole, Gianluca Della Vedova, Paola Bonizzoni

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 453 KB

english, 2012

53

ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences

Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 705 KB

english, 2005

54

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society

Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 191 KB

english, 2005

55

Regularized Least Squares Cancer Classifiers from DNA microarray data

Nicola Ancona, Rosalia Maglietta, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 591 KB

english, 2005

56

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

Giulio Pavesi, Federico Zambelli, Graziano Pesole

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 755 KB

english, 2007

57

Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics

Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 172 KB

english, 2007

58

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combiningin silicoprediction and microarray data

Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro,

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 802 KB

english, 2007

59

Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics

Graziano Pesole, Manuela Helmer-Citterich

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 187 KB

english, 2008

60

The mitochondrial genome ofPhallusia mammillataandPhallusia fumigata(Tunicata, Ascidiacea): high genome plasticity at intra-genus level

Fabio Iannelli, Francesca Griggio, Graziano Pesole, Carmela Gissi

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 981 KB

english, 2007

61

The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates

Damiano Porcelli, Paolo Barsanti, Graziano Pesole, Corrado Caggese

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 1.60 MB

english, 2007

62

High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs inVitis vinifera

Erica Mica, Viviana Piccolo, Massimo Delledonne, Alberto Ferrarini, Mario Pezzotti, Cesare Casati, Cristian Del Fabbro, Giorgio Valle, Alberto Policriti, Michele Morgante, Graziano Pesole, M Enrico Pè

Journal:

Year:

2009

Language:

english

File:

PDF, 1.51 MB

english, 2009

63

Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs inVitis vinifera

Erica Mica, Viviana Piccolo, Massimo Delledonne, Alberto Ferrarini, Mario Pezzotti, Cesare Casati, Cristian Del Fabbro, Giorgio Valle, Alberto Policriti, Michele Morgante, Graziano Pesole, M Enrico Pè

Journal:

Year:

2010

Language:

english

File:

PDF, 1.00 MB

english, 2010

64

Assessment of orthologous splicing isoforms in human and mouse orthologous genes

Federico Zambelli, Giulio Pavesi, Carmela Gissi, David S Horner, Graziano Pesole

Journal:

Year:

2010

Language:

english

File:

PDF, 1.05 MB

english, 2010

65

Huntingtin gene evolution in Chordata and its peculiar features in the ascidianCionagenus

Carmela Gissi, Graziano Pesole, Elena Cattaneo, Marzia Tartari

Journal:

Year:

2006

Language:

english

File:

PDF, 1.12 MB

english, 2006

66

Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes

Flavio Mignone, Anna Anselmo, Giacinto Donvito, Giorgio P Maggi, Giorgio Grillo, Graziano Pesole

Journal:

Year:

2008

Language:

english

File:

PDF, 402 KB

english, 2008

67

Genomic organization and recombinational unit duplication-driven evolution of ovine and bovine T cell receptor gamma loci

Giovanna Vaccarelli, Maria C Miccoli, Rachele Antonacci, Graziano Pesole, Salvatrice Ciccarese

Journal:

Year:

2008

Language:

english

File:

PDF, 1.71 MB

english, 2008

68

Evolutionary analysis of the nucleus-encoded subunits of mammalian cytochrome c oxidase

Cecilia SACCONE, Graziano PESOLE, Bernard KADENBACH

Journal:

Year:

1991

Language:

english

File:

PDF, 534 KB

english, 1991

69

uAUG and uORFs in human and rodent 5′untranslated mRNAs

Michele Iacono, Flavio Mignone, Graziano Pesole

Journal:

Year:

2005

Language:

english

File:

PDF, 161 KB

english, 2005

70

Evolution of nuclearly encoded mitochondrial genes in Metazoa

Anna De Grassi, Corrado Caggese, Domenica D'Elia, Cecilia Lanave, Graziano Pesole, Cecilia Saccone

Journal:

Year:

2005

Language:

english

File:

PDF, 241 KB

english, 2005

71

Mitochondrial phylogeny of Anura (Amphibia): A case study of congruent phylogenetic reconstruction using amino acid and nucleotide characters

Carmela Gissi, Diego San Mauro, Graziano Pesole, Rafael Zardoya

Journal:

Year:

2006

Language:

english

File:

PDF, 220 KB

english, 2006

72

A new strategy to identify novel genes and gene isoforms: Analysis of human chromosomes 15, 21 and 22

Matteo Rè, Flavio Mignone, Michele Iacono, Giorgio Grillo, Sabino Liuni, Graziano Pesole

Journal:

Year:

2006

Language:

english

File:

PDF, 217 KB

english, 2006

73

MitoZoa: A curated mitochondrial genome database of metazoans for comparative genomics studies

Renato Lupi, Paolo D’Onorio de Meo, Ernesto Picardi, Mattia D’Antonio, Daniele Paoletti, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi

Journal:

Year:

2010

Language:

english

File:

PDF, 1.08 MB

english, 2010

74

Isochore specificity of AUG initiator context of human genes

Graziano Pesole, Giorgio Bernardi, Cecilia Saccone

Journal:

Year:

1999

Language:

english

File:

PDF, 50 KB

english, 1999

75

Long-branch attraction phenomenon and the impact of among-site rate variation on rodent phylogeny

Aurelio Reyes, Graziano Pesole, Cecilia Saccone

Journal:

Year:

2000

Language:

english

File:

PDF, 275 KB

english, 2000

76

Structural and functional features of eukaryotic mRNA untranslated regions

Graziano Pesole, Flavio Mignone, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni

Journal:

Year:

2001

Language:

english

File:

PDF, 353 KB

english, 2001

77

Mitochondrial DNA in metazoa: degree of freedom in a frozen event

Cecilia Saccone, Carmela Gissi, Aurelio Reyes, Alessandra Larizza, Elisabetta Sbisà, Graziano Pesole

Journal:

Year:

2002

Language:

english

File:

PDF, 440 KB

english, 2002

78

Molecular strategies in Metazoan genomic evolution

Cecilia Saccone, Pierre-Olivier Barome, Anna Maria D'Erchia, Ilenia D'Errico, Graziano Pesole, Elisabetta Sbisà, Apollonia Tullo

Journal:

Year:

2002

Language:

english

File:

PDF, 315 KB

english, 2002

79

Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications

Elisabetta Sbisà, Filomena Tanzariello, Aurelio Reyes, Graziano Pesole, Cecilia Saccone

Journal:

Year:

1997

Language:

english

File:

PDF, 1.39 MB

english, 1997

80

Structural and compositional features of untranslated regions of eukaryotic mRNAs

Graziano Pesole, Sabino Liuni, Giorgio Grillo, Cecilia Saccone

Journal:

Year:

1997

Language:

english

File:

PDF, 730 KB

english, 1997

81

Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system

Cecilia Saccone, Carla De Giorgi, Carmela Gissi, Graziano Pesole, Aurelio Reyes

Journal:

Year:

1999

Language:

english

File:

PDF, 1.56 MB

english, 1999

82

Phylogenetic analyses: a brief introduction to methods and their application

Horner, David S, Pesole, Graziano

Journal:

Expert Review of Molecular Diagnostics

Year:

2004

Language:

english

File:

PDF, 240 KB

english, 2004

83

Identification of tumor-associated cassette exons in human cancer through EST-based computational prediction and experimental validation

Alessio Valletti, Anna Anselmo, Marina Mangiulli, Ilenia Boria, Flavio Mignone, Giuseppe Merla, Vincenzo D'Angelo, Apollonia Tullo, Elisabetta Sbisà, Anna Maria D'Erchia, Graziano Pesole

Journal:

Molecular Cancer

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

84

Mitochondrial genomes gleaned from human whole-exome sequencing

Picardi, Ernesto, Pesole, Graziano

Journal:

Year:

2012

Language:

english

File:

PDF, 1007 KB

english, 2012

85

Handbook of Comparative Genomics (Principles and Methodology) || Molecular Phylogeny

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 1.26 MB

english, 2003

86

Handbook of Comparative Genomics (Principles and Methodology) || Eukaryotes

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 4.06 MB

english, 2003

87

Handbook of Comparative Genomics (Principles and Methodology) || Biological Databases in the Genomic Era

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 2.61 MB

english, 2003

88

Handbook of Comparative Genomics (Principles and Methodology) || Molecular Biology Techniques for Genomics

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 2.37 MB

english, 2003

89

Handbook of Comparative Genomics (Principles and Methodology) || Computational Methods for the Analysis of Genome Sequence Data

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 8.73 MB

english, 2003

90

NGS-Trex: Next Generation Sequencing Transcriptome profile explorer

Ilenia Boria, Lara Boatti, Graziano Pesole, Flavio Mignone

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 735 KB

english, 2013

91

Untranslated regions of mRNAs

Flavio Mignone, Carmela Gissi, Sabino Liuni, Graziano Pesole

Journal:

Year:

2002

Language:

english

File:

PDF, 247 KB

english, 2002

92

Sequence analysis and compositional properties of untranslated regions of human mRNAs

Pesole, Graziano, Fiormarino, Grazia, Saccone, Cecilia

Journal:

Year:

1994

Language:

english

File:

PDF, 780 KB

english, 1994

93

WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences

Pesole, Graziano, Prunella, Nicola, Liuni, Sabino, Attimonelli, Marcella, Saccone, Cecilia

Journal:

Nucleic Acids Research

Year:

1992

Language:

english

File:

PDF, 422 KB

english, 1992

94

Handbook of Comparative Genomics (Principles and Methodology) || References

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 3.64 MB

english, 2003

95

Handbook of Comparative Genomics (Principles and Methodology) || Frontmatter

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 688 KB

english, 2003

96

Handbook of Comparative Genomics (Principles and Methodology) || Index

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 602 KB

english, 2003

97

Handbook of Comparative Genomics (Principles and Methodology) || Prokaryotes

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 2.64 MB

english, 2003

98

Handbook of Comparative Genomics (Principles and Methodology) || Appendix: URLs Cited in the Text

Saccone, Cecilia, Pesole, Graziano

Year:

2003

Language:

english

File:

PDF, 427 KB

english, 2003

99

Systematic and evolutionary studies in mammals: The contribution of the mitochondrial genome

Larizza, Alessandra, Pesole, Graziano, Saccone, Cecilia

Journal:

Italian Journal of Zoology

Year:

1999

Language:

english

File:

PDF, 552 KB

english, 1999

100

[IEEE 2014 International Conference on High Performance Computing & Simulation (HPCS) - Bologna, Italy (2014.7.21-2014.7.25)] 2014 International Conference on High Performance Computing & Simulation (HPCS) - ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data

D'Antonio, Mattia, D'Onorio De Meo, Paolo, Castrignano, Tiziana, Erbacci, Giovanni, Pallocca, Matteo, Pesole, Graziano

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014