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51

EST data suggest that poplar is an ancient polyploid

Lieven Sterck, Stephane Rombauts, Stefan Jansson, Fredrik Sterky, Pierre Rouzé, Yves Van de Peer

Journal:

New Phytologist

Year:

2005

Language:

english

File:

PDF, 238 KB

english, 2005

52

The small RNA world of plants

Eric Bonnet, Yves Van de Peer, Pierre Rouzé

Journal:

New Phytologist

Year:

2006

Language:

english

File:

PDF, 400 KB

english, 2006

53

Divergent members of the bacterial division Verrucomicrobiales in a temperate freshwater lake

Gabriël Zwart, Raymond Huismans, Miranda P van Agterveld, Yves Van de Peer, Peter De Rijk, Hugo Eenhoorn, Gerard Muyzer, Erik J van Hannen, Herman J Gons, Hendrikus J Laanbroek

Journal:

FEMS Microbiology Ecology

Year:

1998

Language:

english

File:

PDF, 229 KB

english, 1998

54

Reverse-Engineering Transcriptional Modules from Gene Expression Data

Tom Michoel, Riet De Smet, Anagha Joshi, Kathleen Marchal, Yves Van de Peer

Journal:

Annals of the New York Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 292 KB

english, 2009

55

Phylogeny branches out

Van de Peer, Yves

Journal:

Year:

2001

Language:

english

File:

PDF, 139 KB

english, 2001

56

Genomes: the truth is in there

Van de Peer, Yves

Journal:

Year:

2011

Language:

english

File:

PDF, 57 KB

english, 2011

57

Genome sequence of the recombinant protein production host Pichia pastoris

De Schutter, Kristof, Lin, Yao-Cheng, Tiels, Petra, Van Hecke, Annelies, Glinka, Sascha, Weber-Lehmann, Jacqueline, Rouzé, Pierre, Van de Peer, Yves, Callewaert, Nico

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 637 KB

english, 2009

58

Computational approaches to unveiling ancient genome duplications

de Peer, Yves Van

Journal:

Nature Reviews Genetics

Year:

2004

Language:

english

File:

PDF, 560 KB

english, 2004

59

The evolutionary significance of ancient genome duplications

Van de Peer, Yves, Maere, Steven, Meyer, Axel

Journal:

Nature Reviews Genetics

Year:

2009

Language:

english

File:

PDF, 465 KB

english, 2009

60

Opinion: Re-evaluating prokaryotic species

Gevers, Dirk, Cohan, Frederick M., Lawrence, Jeffrey G., Spratt, Brian G., Coenye, Tom, Feil, Edward J., Stackebrandt, Erko, de Peer, Yves Van, Vandamme, Peter, Thompson, Fabiano L.

Journal:

Nature Reviews Microbiology

Year:

2005

Language:

english

File:

PDF, 263 KB

english, 2005

61

Are all fishes ancient polyploids?

Yves Van de Peer, John S. Taylor, Axel Meyer

Journal:

Journal of Structural and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 271 KB

english, 2003

62

Investigating ancient duplication events in the Arabidopsis genome

Jeroen Raes, Klaas Vandepoele, Cedric Simillion, Yvan Saeys, Yves Van de Peer

Journal:

Journal of Structural and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 194 KB

english, 2003

63

The taxonomic position of Chlamydomyxa labyrinthuloides

Wenderoth, Klaus, Marquardt, Jürgen, Fraunholz, Martin, Van De Peer, Yves, Wastl, Jürgen, Maier, Uwe-G.

Journal:

European Journal of Phycology

Year:

1999

Language:

english

File:

PDF, 1.52 MB

english, 1999

64

Evolutionary Relationships Among the Eukaryotic Crown Taxa Taking into Account Site-to-Site Rate Variation in 18S rRNA

Van de Peer, Yves, De Wachter, Rupert

Journal:

Journal of Molecular Evolution

Year:

1997

Language:

english

File:

PDF, 1.50 MB

english, 1997

65

Evolution of eukaryotes as deduced from small ribosomal subunit RNA sequences

Yves van de Peer, Jean-Marc Neefs, Peter de Rijk, Rupert de Wachter

Journal:

Biochemical Systematics and Ecology

Year:

1993

Language:

english

File:

PDF, 799 KB

english, 1993

66

Towards a prokaryotic genomic taxonomy

Tom Coenye, Dirk Gevers, Yves Van de Peer, Peter Vandamme, Jean Swings

Journal:

FEMS Microbiology Reviews

Year:

2005

Language:

english

File:

PDF, 579 KB

english, 2005

67

Novel Insights into Evolution of Protistan Polyketide Synthases through Phylogenomic Analysis

Uwe John, Bánk Beszteri, Evelyne Derelle, Yves Van de Peer, Betsy Read, Hervé Moreau, Allan Cembella

Journal:

Year:

2008

Language:

english

File:

PDF, 917 KB

english, 2008

68

Functional divergence of proteins through frameshift mutations

Jeroen Raes, Yves Van de Peer

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 298 KB

english, 2005

69

Phylogenetic analysis of a fish tapeworm, Proteocephalus exiguus, based on the small subunit rRNA gene

Ivica Král'ová, Yves Van de Peer, Milan Jirků, Marc Van Ranst, Tomáš Scholz, Julius Lukeš

Journal:

Molecular and Biochemical Parasitology

Year:

1997

Language:

english

File:

PDF, 220 KB

english, 1997

70

Genome duplication, divergent resolution and speciation

John S. Taylor, Yves Van de Peer, Axel Meyer

Journal:

Trends in Genetics

Year:

2001

Language:

english

File:

PDF, 45 KB

english, 2001

71

Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice

Klaas Vandepoele, Cedric Simillion, Yves Van de Peer

Journal:

Trends in Genetics

Year:

2002

Language:

english

File:

PDF, 246 KB

english, 2002

72

The Determination and Comparison of the 16S rRNA Gene Sequences of Species of the Genus Pseudomonas (sensu stricto and Estimation of the Natural Intrageneric Relationships

Edward R.B. Moore, Margit Mau, Angelika Arnscheidt, Erik C. Böttger, Roger A. Hutson, Matthew D. Collins, Yves Van De Peer, Rupert De Wachter, Kenneth N. Timmis

Journal:

Systematic and Applied Microbiology

Year:

1996

Language:

english

File:

PDF, 3.11 MB

english, 1996

73

Compilation of Pseudomonad Sequences Present in a Database on the Structure of Ribosomal RNA

Yves Van De Peer, Marc Vancanneyt, Rupert De Wachter

Journal:

Systematic and Applied Microbiology

Year:

1996

Language:

english

File:

PDF, 840 KB

english, 1996

74

Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis

John S Taylor, Yves Van de Peer, Axel Meyer

Journal:

Current Biology

Year:

2001

Language:

english

File:

PDF, 42 KB

english, 2001

75

Phylogenetic Analysis of the SSU rRNA from Members of the Chrysophyceae

Robert A. Andersen, Yves Van de Peer, Daniel Potter, Julianne P. Sexton, Masanobu Kawachi, Todd LaJeunesse

Journal:

Year:

1999

Language:

english

File:

PDF, 1.42 MB

english, 1999

76

Evolutionary Relationships among Heterokont Algae (the Autotrophic Stramenopiles) Based on Combined Analyses of Small and Large Subunit Ribosomal RNA

Abdelghani Ben Ali, Raymond De Baere, Rupert De Wachter, Yves Van de Peer

Journal:

Year:

2002

Language:

english

File:

PDF, 155 KB

english, 2002

77

TAXONOMIC STUDY OF MARINE OSCILLATORIACEAN STRAINS (CYANOBACTERIA) WITH NARROW TRICHOMES. II. NUCLEOTIDE SEQUENCE ANALYSIS OF THE 16S RIBOSOMAL RNA

Annick Wilmotte, Seán Turner, Yves Van de Peer, Norman R. Pace

Journal:

Journal of Phycology

Year:

1992

File:

PDF, 2.60 MB

1992

78

Highlights of the BioTM 2010 workshop on advances in bio text mining

Thomas Abeel, Sofie Van Landeghem, Roser Morante, Vincent Van Asch, Yves Van de Peer, Walter Daelemans, Yvan Saeys

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 170 KB

english, 2010

79

Semantically linking molecular entities in literature through entity relationships

Van Landeghem, Sofie, Björne, Jari, Abeel, Thomas, De Baets, Bernard, Salakoski, Tapio, Van de Peer, Yves

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 535 KB

english, 2012

80

Feature selection for splice site prediction: A new method using EDA-based feature ranking

Yvan Saeys, Sven Degroeve, Dirk Aeyels, Pierre Rouzé, Yves Van de Peer

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 409 KB

english, 2004

81

In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation

Tineke Casneuf, Yves Van de Peer, Wolfgang Huber

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 497 KB

english, 2007

82

Modelling the ancestral sequence distribution and model frequencies in context-dependent models for primate non-coding sequences

Guy Baele, Yves Van de Peer, Stijn Vansteelandt

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 2.17 MB

english, 2010

83

The Potential for pathogenicity was present in the ancestor of the Ascomycete subphylum Pezizomycotina

Aminael Sánchez-Rodríguez, Cindy Martens, Kristof Engelen, Yves Van de Peer, Kathleen Marchal

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 1.76 MB

english, 2010

84

An ancient genome duplication contributed to the abundance of metabolic genes in the mossPhyscomitrella patens

Stefan A Rensing, Julia Ick, Jeffrey A Fawcett, Daniel Lang, Andreas Zimmer, Yves Van de Peer, Ralf Reski

Journal:

BMC Evolutionary Biology

Year:

2007

Language:

english

File:

PDF, 335 KB

english, 2007

85

Efficient context-dependent model building based on clustering posterior distributions for non-coding sequences

Guy Baele, Yves Van de Peer, Stijn Vansteelandt

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 1.22 MB

english, 2009

86

Predicting protein-protein interactions inArabidopsis thalianathrough integration of orthology, gene ontology and co-expression

Stefanie De Bodt, Sebastian Proost, Klaas Vandepoele, Pierre Rouzé, Yves Van de Peer

Journal:

Year:

2009

Language:

english

File:

PDF, 1.27 MB

english, 2009

87

The hidden duplication past of the plant pathogenPhytophthoraand its consequences for infection

Cindy Martens, Yves Van de Peer

Journal:

Year:

2010

Language:

english

File:

PDF, 2.33 MB

english, 2010

88

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks

Tom Michoel, Riet De Smet, Anagha Joshi, Yves Van de Peer, Kathleen Marchal

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 426 KB

english, 2009

89

Primary and secondary structure of the 18S ribosomal RNA of the bird spider Eurypelma californica and evolutionary relationships among eukaryotic phyla

Lydia HENDRIKS, Christine van BROECKHOVEN, Antoon VANDENBERGHE, Yves van de PEER, Rupert de WACHTER

Journal:

Year:

1988

Language:

english

File:

PDF, 531 KB

english, 1988

90

A Transgenic Mouse Marking Live Replicating Cells Reveals In Vivo Transcriptional Program of Proliferation

Agnes Klochendler, Noa Weinberg-Corem, Maya Moran, Avital Swisa, Nathalie Pochet, Virginia Savova, Jonas Vikeså, Yves Van de Peer, Michael Brandeis, Aviv Regev, Finn Cilius Nielsen, Yuval Dor, Amir Ed

Journal:

Developmental Cell

Year:

2012

Language:

english

File:

PDF, 578 KB

english, 2012

91

The 18S ribosomal RNA sequence of the sea anemone Ammonia sulcata and its evolutionary position among other eukaryotes

Lydia Hendriks, Yves Van de Peer, Martine Van Herck, Jean-Marc Neefs, Rupert De Wachter

Journal:

Year:

1990

Language:

english

File:

PDF, 434 KB

english, 1990

92

Structure of the small ribosomal subunit RNA of the pulmonate snail, Limicolaria kambeul, and phylogenetic analysis of the Metazoa

Birgitta Winnepennickx, Thierry Backeljau, Yves van de Peer, Rupert De Wachter

Journal:

Year:

1992

Language:

english

File:

PDF, 385 KB

english, 1992

93

Together We Stand: Genes Cluster to Coordinate Regulation

Grigoris Amoutzias, Yves Van de Peer

Journal:

Developmental Cell

Year:

2008

Language:

english

File:

PDF, 181 KB

english, 2008

94

Gene duplication and biased functional retention of paralogs in bacterial genomes

Dirk Gevers, Klaas Vandepoele, Cedric Simillion, Yves Van de Peer

Journal:

Trends in Microbiology

Year:

2004

Language:

english

File:

PDF, 594 KB

english, 2004

95

And then there were many: MADS goes genomic

Stefanie De Bodt, Jeroen Raes, Yves Van de Peer, Günter Theißen

Journal:

Trends in Plant Science

Year:

2003

Language:

english

File:

PDF, 444 KB

english, 2003

96

Canalization without flux sensors: a traveling-wave hypothesis

Roeland M.H. Merks, Yves Van de Peer, Dirk Inzé, Gerrit T.S. Beemster

Journal:

Trends in Plant Science

Year:

2007

Language:

english

File:

PDF, 823 KB

english, 2007

97

The flowering world: a tale of duplications

Yves Van de Peer, Jeffrey A. Fawcett, Sebastian Proost, Lieven Sterck, Klaas Vandepoele

Journal:

Trends in Plant Science

Year:

2009

Language:

english

File:

PDF, 689 KB

english, 2009

98

Genome duplication and the origin of angiosperms

Stefanie De Bodt, Steven Maere, Yves Van de Peer

Journal:

Trends in Ecology & Evolution

Year:

2005

Language:

english

File:

PDF, 159 KB

english, 2005

99

Secundary structure of the large ribosomal subunit RNA of the moss Funaria hygrometrica

Ingrid Capesius, Yves Van de Peer

Journal:

Journal of Plant Physiology

Year:

1997

Language:

english

File:

PDF, 277 KB

english, 1997

100

Microsporidia: accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi

Yves Van de Peer, Abdelghani Ben Ali, Axel Meyer

Journal:

Year:

2000

Language:

english

File:

PDF, 532 KB

english, 2000

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