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1

Transforming clinical microbiology with bacterial genome sequencing

Didelot, Xavier, Bowden, Rory, Wilson, Daniel J., Peto, Tim E. A., Crook, Derrick W.

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 441 KB

english, 2012

2

[IEEE 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) - Valencia, Spain (2014.6.1-2014.6.4)] IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) - Machine learning for the prediction of antibacterial susceptibility in Mycobacterium tuberculosis

Niehaus, Katherine E., Walker, Timothy M., Crook, Derrick W., Peto, Tim E. A., Clifton, David A.

Year:

2014

Language:

english

File:

PDF, 803 KB

english, 2014

3

21st-Century Hazards of Smoking and Benefits of Cessation in the United States

Jha, Prabhat, Ramasundarahettige, Chinthanie, Landsman, Victoria, Rostron, Brian, Thun, Michael, Anderson, Robert N., McAfee, Tim, Peto, Richard

Journal:

Boston Medical and Surgical Journal

Year:

2013

Language:

english

File:

PDF, 782 KB

english, 2013

4

WGS to predict antibiotic MICs for Neisseria gonorrhoeae

Eyre, David W., De Silva, Dilrini, Cole, Kevin, Peters, Joanna, Cole, Michelle J., Grad, Yonatan H., Demczuk, Walter, Martin, Irene, Mulvey, Michael R., Crook, Derrick W., Walker, A. Sarah, Peto, Tim

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2017

Language:

english

File:

PDF, 275 KB

english, 2017

5

Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing

Mathers, Amy J., Stoesser, Nicole, Sheppard, Anna E., Pankhurst, Louise, Giess, Adam, Yeh, Anthony J., Didelot, Xavier, Turner, Stephen D., Sebra, Robert, Kasarskis, Andrew, Peto, Tim, Crook, Derrick,

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2015

Language:

english

File:

PDF, 1.03 MB

english, 2015

6

The antibiotic course has had its day

Llewelyn, Martin J, Fitzpatrick, Jennifer M, Darwin, Elizabeth, SarahTonkin-Crine,, Gorton, Cliff, Paul, John, Peto, Tim E A, Yardley, Lucy, Hopkins, Susan, Walker, Ann Sarah

Journal:

Year:

2017

Language:

english

File:

PDF, 998 KB

english, 2017

7

[IEEE 2018 IEEE World Congress on Services (SERVICES) - San Francisco, CA, USA (2018.7.2-2018.7.7)] 2018 IEEE World Congress on Services (SERVICES) - An Open-Source Azure Solution for Scalable Genomics Workflows

Yang-Turner, Fan, Gripper, Lawrence, Swann, Jeremy, Do, Trien, Foster, Dona, Volk, Denis, Ramanan, Anita, Robinson, Marcus, Peto, Tim, Crook, Derrick

Year:

2018

Language:

english

File:

PDF, 186 KB

english, 2018

8

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

Gweon, H. Soon, Shaw, Liam P., Swann, Jeremy, De Maio, Nicola, AbuOun, Manal, Niehus, Rene, Hubbard, Alasdair T. M., Bowes, Mike J., Bailey, Mark J., Peto, Tim E. A., Hoosdally, Sarah J., Walker, A. S

Journal:

Environmental Microbiome

Year:

2019

Language:

english

File:

PDF, 2.32 MB

english, 2019

9

The evolution of genetic structure in the marine pathogen, Vibrio vulnificus

Naiel Bisharat, Daniel I. Cohen, Martin C. Maiden, Derrick W. Crook, Tim Peto, Rosalind M. Harding

Journal:

Infection, Genetics and Evolution

Year:

2007

Language:

english

File:

PDF, 720 KB

english, 2007

10

Is MRSA admission bacteraemia community-acquired? A case control study

Ruth Miller, Hanif Esmail, Tim Peto, Sarah Walker, Derrick Crook, David Wyllie

Journal:

Journal of Infection

Year:

2008

Language:

english

File:

PDF, 234 KB

english, 2008

11

Adult bacterial meningitis in malawi: a randomised controlled trail of steroid adjuvant therapy and a comparison of intravenous and intramuscular ceftriaxone

Matthew Scarborough, Stephen Gordon, Christopher Whitty, Neil French, Yasin Njalale, Alex Chitani, Tim Peto, David Lalloo, Eduard Zijlstra

Journal:

Journal of Infection

Year:

2008

Language:

english

File:

PDF, 40 KB

english, 2008

12

An efficient record linkage scheme using graphical analysis for identifier error detection

John M Finney, A Sarah Walker, Tim EA Peto, David H Wyllie

Journal:

BMC Medical Informatics and Decision Making

Year:

2011

Language:

english

File:

PDF, 432 KB

english, 2011

13

p53 mutation with frequent novel codons but not a mutator phenotype in BRCA1- and BRCA2-associated breast tumours

Crook, Tim, Brooks, Louise A, Crossland, Susan, Osin, P, Barker, Karen T, Waller, Joanne, Philp, Elizabeth, Smith, Paul D, Yulug, Isik, Peto, Julian

Journal:

Year:

1998

Language:

english

File:

PDF, 531 KB

english, 1998

14

Aids clinical trials: Editors: Diane M. Finkelstein and David A. Schoenfeld, John Wiley & Sons, New York, 1995, ISBN 0471588237 $49.95

Tim EA Peto, Abdel G Babiker, Janet H Darbyshire

Journal:

Controlled Clinical Trials

Year:

1997

Language:

english

File:

PDF, 183 KB

english, 1997

15

Adjunctive dexamethasone in bacterial meningitis: a meta-analysis of individual patient data

Diederik van de Beek, Jeremy J Farrar, Jan de Gans, Nguyen Thi Hoang Mai, Elizabeth M Molyneux, Heikki Peltola, Tim E Peto, Irmeli Roine, Mathew Scarborough, Constance Schultsz, Guy E Thwaites, Phung

Journal:

The Lancet Neurology

Year:

2010

Language:

english

File:

PDF, 342 KB

english, 2010

16

Hormone status of in-situ cancer in BRCA1 and BRCA2 mutation carriers

Pinchas Osin, Tim Crook, Trevor Powles, Julian Peto, Barry Gusterson, BA Gusterson

Journal:

Year:

1998

Language:

english

File:

PDF, 45 KB

english, 1998

17

When enough is enough: how the decision was made to stop the FEAST trial: data and safety monitoring in an African trial of Fluid Expansion As Supportive Therapy (FEAST) for critically ill children

Jim Todd, Robert S Heyderman, Philippa Musoke, Tim Peto

Journal:

Year:

2013

Language:

english

File:

PDF, 305 KB

english, 2013

18

Whole genome sequencing and de novo assembly identifies Sydney-like variant noroviruses and recombinants during the winter 2012/2013 outbreak in England

Wong, T H, Dearlove, Bethany L, Hedge, Jessica, Giess, Adam P, Piazza, Paolo, Trebes, Amy, Paul, John, Smit, Erasmus, Smith, E, Sutton, Julian K, Wilcox, Mark H, Dingle, Kate E, Peto, Tim E A, Crook,

Journal:

Virology Journal

Year:

2013

Language:

english

File:

PDF, 731 KB

english, 2013

19

Hospital and community transmission of Clostridium difficile: a whole genome sequencing study

Eyre, David W, Cule, Madeleine L, Walker, A Sarah, Crook, Derrick W, Wilcox, Mark H, Peto, Tim E A

Journal:

Year:

2012

Language:

english

File:

PDF, 66 KB

english, 2012

20

SSB Enhances Detection of ssDNA Translocation through Solid-State Nanopores

Japrung, Deanpen, Nadzeyka, Achim, Peto, Lloyd, Bauerdick, Sven, Albrecht, Tim, Edel, Joshua

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 61 KB

english, 2012

21

An eight year experience of conservative management for aortic graft sepsis

Gordon, Andrew, Conlon, Chris, Collin, Jack, Peto, Tim, Gray, Derek, Hands, Linda, Morris, Peter

Journal:

European Journal of Vascular Surgery

Year:

1994

Language:

english

File:

PDF, 535 KB

english, 1994

22

Genotypic prediction of anti-microbial susceptibilities in Staphylococcus aureus

Gordon, Claire, Golubchik, Tanya, Price, James, Walker, Sarah, Peto, Tim, Crook, Derrick

Journal:

Journal of Infection

Year:

2013

Language:

english

File:

PDF, 56 KB

english, 2013

23

SSB Binding to Single-Stranded DNA Probed Using Solid-State Nanopore Sensors

Japrung, Deanpen, Bahrami, Azadeh, Nadzeyka, Achim, Peto, Lloyd, Bauerdick, Sven, Edel, Joshua B., Albrecht, Tim

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 1.52 MB

english, 2014

24

Adverse Effects of Antimalarials

Dr Graz A. Luzzi,Tim E. A. Peto

Journal:

Year:

1993

Language:

english

File:

PDF, 1.66 MB

english, 1993

25

Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event

Golubchik, Tanya, Brueggemann, Angela B, Street, Teresa, Gertz, Robert E, Spencer, Chris C A, Ho, Thien, Giannoulatou, Eleni, Link-Gelles, Ruth, Harding, Rosalind M, Beall, Bernard, Peto, Tim E A, Moo

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 309 KB

english, 2012

26

Molecular Epidemiology of Clostridium difficile Strains in Children Compared with That of Strains Circulating in Adults with Clostridium difficile-Associated Infection : Fig. 1.

Stoesser, Nicole, Crook, Derrick W., Fung, Rowena, Griffiths, David, Harding, Rosalind M., Kachrimanidou, Melina, Keshav, Satish, Peto, Tim E., Vaughan, Alison, Walker, A. Sarah, Dingle, Kate E.

Journal:

Journal of Clinical Microbiology

Year:

2011

Language:

english

File:

PDF, 170 KB

english, 2011

27

Clostridium difficile Mixed Infection and Reinfection: Fig 1

Eyre, David W., Walker, A. Sarah, Griffiths, David, Wilcox, Mark H., Wyllie, David H., Dingle, Kate E., Crook, Derrick W., Peto, Tim E. A.

Journal:

Journal of Clinical Microbiology

Year:

2012

Language:

english

File:

PDF, 695 KB

english, 2012

28

Calculation of Liver‐to‐Blood Inocula, Parasite Growth Rates, and Preerythrocytic Vaccine Efficacy, from Serial Quantitative Polymerase Chain Reaction Studies of Volunteers Challenged with Malaria Sporozoites

Bejon, Philip, Andrews, Laura, Andersen, Rikke F., Dunachie, Susanna, Webster, Daniel, Walther, Michael, Gilbert, Sarah C., Peto, Tim, Hill, Adrian V. S.

Journal:

The Journal of Infectious Diseases

Year:

2005

Language:

english

File:

PDF, 361 KB

english, 2005

29

Surveillance of Infection Severity: A Registry Study of Laboratory Diagnosed Clostridium difficile

Schlackow, Iryna, Walker, A. Sarah, Dingle, Kate, Griffiths, David, Oakley, Sarah, Finney, John, Vaughan, Ali, Gill, Martin J., Crook, Derrick W., Peto, Tim E. A., Wyllie, David H., Opal, Steven M.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.16 MB

english, 2012

30

Detection of Mixed Infection from Bacterial Whole Genome Sequence Data Allows Assessment of Its Role in Clostridium difficile Transmission

Eyre, David W., Cule, Madeleine L., Griffiths, David, Crook, Derrick W., Peto, Tim E. A., Walker, A. Sarah, Wilson, Daniel J., Fraser, Christophe

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 587 KB

english, 2013

31

Extended Sequence Typing of Campylobacter spp., United Kingdom

Dingle, Kate E., McCarthy, Noel D., Cody, Alison J., Peto, Tim E.A., Maiden, Martin C. J.

Journal:

Emerging Infectious Diseases

Year:

2008

Language:

english

File:

PDF, 129 KB

english, 2008

32

Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193

Sheppard, Anna E., Stoesser, Nicole, Sebra, Robert, Kasarskis, Andrew, Deikus, Gintaras, Anson, Luke, Walker, A. Sarah, Peto, Tim E., Crook, Derrick W., Mathers, Amy J.

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 154 KB

english, 2016

33

Retinal nerve fibre layer (RNFL) thinning in genetic ftd

Dick, Katrina M., Shakespeare, Tim J., Crutch, Sebastian J., Peto, Tunde, Lengyel, Imre, Rohrer, Jonathan D.

Journal:

Alzheimer's & Dementia

Year:

2015

Language:

english

File:

PDF, 73 KB

english, 2015

34

Cross-reactive cytotoxic T lymphocytes against a HIV-1 p24 epitope in slow progressors with B*57

Gillespie, Geraldine M. A., Kaul, Rupert, Dong, Tao, Yang, Hong-Bing, Rostron, Tim, Bwayo, Job. J., Kiama, Peter, Peto, Tim, Plummer, Francis A., McMichael, Andrew J., Rowland-Jones, Sarah L.

Journal:

Year:

2002

Language:

english

File:

PDF, 285 KB

english, 2002

35

21st-Century Hazards of Smoking and Benefits of Cessation in the United States

Jha, Prabhat, Ramasundarahettige, Chinthanie, Landsman, Victoria, Rostron, Brain, Thun, Michael, Anderson, Robert N., Mcafee, Tim, Peto, Richard

Journal:

Survey of Anesthesiology

Year:

2013

Language:

english

File:

PDF, 190 KB

english, 2013

36

A critical analysis of recent data on zidovudine therapy

Journal:

Year:

1990

File:

PDF, 453 KB

1990

37

Acquisition of Streptococcus pneumoniae and Nonspecific Morbidity in Infants and Their Families

Sleeman, Karen L., Daniels, Lesley, Gardiner, Marion, Griffiths, David, Deeks, Jonathan J., Dagan, Ron, Gupta, Sunetra, Moxon, E Richard, Peto, Tim E., Crook, Derrick W.

Journal:

Pediatric Infectious Disease Journal

Year:

2005

Language:

english

File:

PDF, 266 KB

english, 2005

38

Issues in the Design and Analysis of Therapeutic Trials in Human Immunodeficiency Virus Infection

Abdel G. Babiker, Janet H. Darbyshire, Tim E. A. Peto and A. Sarah Walker

Journal:

Journal of the Royal Statistical Society: Series A (Statistics in Society)

Year:

1998

Language:

english

File:

PDF, 1.05 MB

english, 1998

39

The evolutionary and clinical implications of the uneven distribution of the frequency of the inherited haemoglobin variants over short geographical distances

Premawardhena, Anuja, Allen, Angela, Piel, Fred, Fisher, Chris, Perera, Laxman, Rodrigo, Rexan, Goonathilaka, Gayan, Ramees, Lebbe, Peto, Tim, Olivieri, Nancy, Weatherall, David

Journal:

British Journal of Haematology

Year:

2016

Language:

english

File:

PDF, 484 KB

english, 2016

40

Chromosomal Integration of the Klebsiella pneumoniae Carbapenemase Gene, bla KPC , in Klebsiella Species Is Elusive but Not Rare

Mathers, Amy J., Stoesser, Nicole, Chai, Weidong, Carroll, Joanne, Barry, Katie, Cherunvanky, Anita, Sebra, Robert, Kasarskis, Andrew, Peto, Tim E., Walker, A. Sarah, Sifri, Costi D., Crook, Derrick W

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

41

Tuberculosis is changing

Walker, Timothy M, Cruz, Ana Louisa Gibertoni, Peto, Tim E, Smith, E Grace, Esmail, Hanif, Crook, Derrick W

Journal:

The Lancet Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 54 KB

english, 2017

42

Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids

Orlek, Alex, Phan, Hang, Sheppard, Anna E., Doumith, Michel, Ellington, Matthew, Peto, Tim, Crook, Derrick, Walker, A. Sarah, Woodford, Neil, Anjum, Muna F., Stoesser, Nicole

Journal:

Year:

2017

Language:

english

File:

PDF, 1.33 MB

english, 2017

43

The relative importance of large problems far away versus small problems closer to home: insights into limiting the spread of antimicrobial resistance in England

Donker, Tjibbe, Henderson, Katherine L., Hopkins, Katie L., Dodgson, Andrew R., Thomas, Stephanie, Crook, Derrick W., Peto, Tim E. A., Johnson, Alan P., Woodford, Neil, Walker, A. Sarah, Robotham, Jul

Journal:

Year:

2017

Language:

english

File:

PDF, 2.57 MB

english, 2017

44

Mortality risks associated with emergency admissions during weekends and public holidays: an analysis of electronic health records

Walker, A Sarah, Mason, Amy, Quan, T Phuong, Fawcett, Nicola J, Watkinson, Peter, Llewelyn, Martin, Stoesser, Nicole, Finney, John, Davies, Jim, Wyllie, David H, Crook, Derrick W, Peto, Tim E A

Journal:

Year:

2017

Language:

english

File:

PDF, 1.27 MB

english, 2017

45

Molecular diagnosis of orthopaedic device infection direct from sonication fluid by metagenomic sequencing

Street, Teresa L., Sanderson, Nicholas D., Atkins, Bridget L., Brent, Andrew J., Cole, Kevin, Foster, Dona, McNally, Martin A., Oakley, Sarah, Peto, Leon, Taylor, Adrian, Peto, Tim E. A., Crook, Derri

Journal:

Journal of Clinical Microbiology

Year:

2017

Language:

english

File:

PDF, 538 KB

english, 2017

46

Metalware-associated orthopaedic infections caused by Staphylococcus lugdunensis: an emerging pathogen

Li, Ang, Gow, Nicholas, Atkins, Bridget L., Taylor, Adrian, Peto, Tim, McNally, Martin A., Matthews, Philippa C.

Journal:

Journal of Infection

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

47

A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database

Orlek, Alex, Phan, Hang, Sheppard, Anna E., Doumith, Michel, Ellington, Matthew, Peto, Tim, Crook, Derrick, Walker, A. Sarah, Woodford, Neil, Anjum, Muna F., Stoesser, Nicole

Journal:

Year:

2017

Language:

english

File:

PDF, 139 KB

english, 2017

48

A longitudinal study to assess the frequency and cost of antivascular endothelial therapy, and inequalities in access, in England between 2005 and 2015

Hollingworth, William, Jones, Tim, Reeves, Barnaby C, Peto, Tunde

Journal:

Year:

2017

Language:

english

File:

PDF, 3.34 MB

english, 2017

49

Severity of illness and the weekend effect – Authors' reply

Walker, A Sarah, Watkinson, Peter, Llewelyn, Martin, Stoesser, Nicole, Peto, Tim

Journal:

Lancet (London, England)

Year:

2017

Language:

english

File:

PDF, 94 KB

english, 2017

50

Robust Prediction of Resistance to Trimethoprim in Staphylococcus aureus

Fowler, Philip W., Cole, Kevin, Gordon, N. Claire, Kearns, Angela M., Llewelyn, Martin J., Peto, Tim E.A., Crook, Derrick W., Walker, A. Sarah

Journal:

Cell Chemical Biology

Year:

2018

Language:

english

File:

PDF, 2.17 MB

english, 2018