Plewczynski, D: search on Z-Library

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51

[IEEE 2010 IEEE Congress on Evolutionary Computation (CEC) - Barcelona, Spain (2010.07.18-2010.07.23)] IEEE Congress on Evolutionary Computation - Real-coded differential crisp clustering for MRI brain image segmentation

Saha, Indrajit, Maulik, Ujjwal, Bandyopadhyay, Sanghamitra, Plewczynski, Dariusz

Year:

2010

Language:

english

File:

PDF, 228 KB

english, 2010

52

Diffusion on curved, periodic surfaces

Hołyst, R., Plewczyński, D., Aksimentiev, A., Burdzy, K.

Journal:

Physical Review E

Year:

1999

Language:

english

File:

PDF, 268 KB

english, 1999

53

Influence of colored noise on chaotic systems

Redaelli, Stefano, Plewczyński, Dariusz, Macek, Wiesław M.

Journal:

Physical Review E

Year:

2002

Language:

english

File:

PDF, 237 KB

english, 2002

54

[IEEE 2008 International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies (BIOTECHNO) - Bucharest, Romania (2008.06.29-2008.07.5)] 2008 International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies - TVscreen: Trend Vector Virtual SCREENing of Large Commercial Compounds Collections

Plewczynski, Dariusz

Year:

2008

Language:

english

File:

PDF, 380 KB

english, 2008

55

3D-Fun: predicting enzyme function from structure

von Grotthuss, M., Plewczynski, D., Vriend, G., Rychlewski, L.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 2.43 MB

english, 2008

56

AutoMotif server: prediction of single residue post-translational modifications in proteins

Plewczynski, D., Tkacz, A., Wyrwicz, L. S., Rychlewski, L.

Journal:

Year:

2005

Language:

english

File:

PDF, 44 KB

english, 2005

57

Target Specific Compound Identification Using a Support Vector Machine

Plewczynski, Dariusz, von Grotthuss, Marcin, H. Spieser, Stephane, Rychewski, Leszek, Wyrwicz, Lucjan, Ginalski, Krzysztof, Koch, Uwe

Journal:

Combinatorial Chemistry & High Throughput Screening

Year:

2007

Language:

english

File:

PDF, 228 KB

english, 2007

58

Binding Activity Prediction of Cyclin-Dependent Inhibitors

Saha, Indrajit, Rak, Benedykt, Bhowmick, Shib Sankar, Maulik, Ujjwal, Bhattacharjee, Debotosh, Koch, Uwe, Lazniewski, Michal, Plewczynski, Dariusz

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 4.12 MB

english, 2015

59

A combined systems and structural modeling approach repositions antibiotics for Mycoplasma genitalium

Kazakiewicz, Denis, Karr, Jonathan R., Langner, Karol M., Plewczynski, Dariusz

Journal:

Computational Biology and Chemistry

Year:

2015

Language:

english

File:

PDF, 863 KB

english, 2015

60

ProteinSplit: splitting of multi-domain proteins using prediction of ordered and disordered regions in protein sequences for virtual structural genomics

Wyrwicz, Lucjan S, Koczyk, Grzegorz, Rychlewski, Leszek, Plewczynski, Dariusz

Journal:

Journal of Physics Condensed Matter

Year:

2007

Language:

english

File:

PDF, 1.90 MB

english, 2007

61

Modelling of potentially promising SARS protease inhibitors

D. Plewczynski, M. Hoffmann, M. V. Grotthuss, L. Knizewski, L. Rychewski, K. Eitner, K. Ginalski

Year:

2007

Language:

english

File:

PDF, 970 KB

english, 2007

62

Clinical Applications for Next-Generation Sequencing || Analysis of Structural Chromosome Variants by Next Generation Sequencing Methods

Plewczynski, Dariusz

Year:

2016

Language:

english

File:

PDF, 959 KB

english, 2016

63

Detecting reliable non interacting proteins (NIPs) significantly enhancing computational prediction of protein-protein interactions using machine learning methods

Srivastava, Aashish, Mazzocco, Giovanni, Kel, Alexander, Wyrwicz, Lucjan, Plewczynski, Dariusz

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

64

Virtual High Throughput Screening Using Combined Random Forest and Flexible Docking

Plewczynski, Dariusz, Grotthuss, Marcin, Rychlewski, Leszek, Ginalski, Krzysztof

Journal:

Combinatorial Chemistry & High Throughput Screening

Year:

2009

Language:

english

File:

PDF, 83 KB

english, 2009

65

Uncharacterized DUF1574 leptospira proteins are SGNH hydrolases

Knizewski, Lukasz, Steczkiewicz, Kamil, Kuchta, Krzysztof, Wyrwicz, Lucjan, Plewczynski, Dariusz, Kolinski, Andrzej, Rychlewski, Leszek, Ginalski, Krzysztof

Journal:

Year:

2008

Language:

english

File:

PDF, 811 KB

english, 2008

66

Improved differential evolution for microarray analysis

Saha, Indrajit, Plewczynski, Dariusz, Maulik, Ujjwal, Bandyopadhyay, Sanghamitra

Journal:

International Journal of Data Mining and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.24 MB

english, 2012

67

2dSpAn: semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity

Basu, Subhadip, Plewczynski, Dariusz, Saha, Satadal, Roszkowska, Matylda, Magnowska, Marta, Baczynska, Ewa, Wlodarczyk, Jakub

Journal:

Year:

2016

Language:

english

File:

PDF, 1.16 MB

english, 2016

68

3D-GNOME: an integrated web service for structural modeling of the 3D genome

Szalaj, Przemyslaw, Michalski, Paul J., Wróblewski, Przemysław, Tang, Zhonghui, Kadlof, Michal, Mazzocco, Giovanni, Ruan, Yijun, Plewczynski, Dariusz

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.72 MB

english, 2016

69

PDP-CON: prediction of domain/linker residues in protein sequences using a consensus approach

Chatterjee, Piyali, Basu, Subhadip, Zubek, Julian, Kundu, Mahantapas, Nasipuri, Mita, Plewczynski, Dariusz

Journal:

Journal of Molecular Modeling

Year:

2016

Language:

english

File:

PDF, 803 KB

english, 2016

70

The proline-rich region of glyceraldehyde-3-phosphate dehydrogenase from human sperm may bind SH3 domains, as revealed by a bioinformatic study of low-complexity protein segments

Tatjewski, Marcin, Gruca, Aleksandra, Plewczynski, Dariusz, Grynberg, Marcin

Journal:

Molecular Reproduction and Development

Year:

2016

Language:

english

File:

PDF, 276 KB

english, 2016

71

An integrated 3-dimensional genome modeling engine for data-driven simulation of spatial genome organization

Szałaj, Przemysław, Tang, Zhonghui, Michalski, Paul, Pietal, Michal J, Luo, Oscar J, Sadowski, Michał, Li, Xingwang, Radew, Kamen, Ruan, Yijun, Plewczynski, Dariusz

Journal:

Genome Research

Year:

2016

Language:

english

File:

PDF, 668 KB

english, 2016

72

Novel neuro-audiological findings and further evidence for TWNK involvement in Perrault syndrome

Ołdak, Monika, Oziębło, Dominika, Pollak, Agnieszka, Stępniak, Iwona, Lazniewski, Michal, Lechowicz, Urszula, Kochanek, Krzysztof, Furmanek, Mariusz, Tacikowska, Grażyna, Plewczynski, Dariusz, Wolak,

Journal:

Journal of Translational Medicine

Year:

2017

Language:

english

File:

PDF, 3.43 MB

english, 2017

73

Quantitative 3-D morphometric analysis of individual dendritic spines

Basu, Subhadip, Saha, Punam Kumar, Roszkowska, Matylda, Magnowska, Marta, Baczynska, Ewa, Das, Nirmal, Plewczynski, Dariusz, Wlodarczyk, Jakub

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.89 MB

english, 2018

74

Three-dimensional organization and dynamics of the genome

Szalaj, Przemyslaw, Plewczynski, Dariusz

Journal:

Cell Biology and Toxicology

Year:

2018

Language:

english

File:

PDF, 2.79 MB

english, 2018

75

Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction

Al Bkhetan, Ziad, Plewczynski, Dariusz

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.76 MB

english, 2018

76

3gClust: Human Protein Cluster Analysis

Halder, Anup Kumar, Chatterjee, Piyali, Nasipuri, Mita, Plewczynski, Dariusz, Basu, Subhadip

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2018

Language:

english

File:

PDF, 2.18 MB

english, 2018

77

Social adaptation in multi-agent model of linguistic categorization is affected by network information flow

Zubek, Julian, Denkiewicz, Michał, Barański, Juliusz, Wróblewski, Przemysław, Rączaszek-Leonardi, Joanna, Plewczynski, Dariusz, Amblard, Frederic

Journal:

Year:

2017

Language:

english

File:

PDF, 4.91 MB

english, 2017

78

Application of Machine Learning Method in Genomics and Proteomics

Lin, Hao, Chen, Wei, Anandakrishnan, Ramu, Plewczynski, Dariusz

Journal:

The Scientific World JOURNAL

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

79

Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis

Bokota, Grzegorz, Magnowska, Marta, Kuśmierczyk, Tomasz, Łukasik, Michał, Roszkowska, Matylda, Plewczynski, Dariusz

Journal:

Frontiers in Computational Neuroscience

Year:

2016

Language:

english

File:

PDF, 2.00 MB

english, 2016

80

Oncogenes expand during evolution to withstand somatic amplification

Wang, X, Li, X, Zhang, L, Wong, S H, Wang, M H T, Tse, G, Dai, R Z W, Nakatsu, G, Coker, O O, Chen, Z, Ko, H, Chan, J Y K, Liu, T, Cheng, C H K, Cheng, A S L, To, K F, Plewczynski, D, Sung, J J Y, Yu,

Journal:

Annals of Oncology

Year:

2018

Language:

english

File:

PDF, 703 KB

english, 2018

81

One protein to rule them all: The role of CCCTC-binding factor in shaping human genome in health and disease

Lazniewski, Michal, Dawson, Wayne K., Rusek, Anna Maria, Plewczynski, Dariusz

Journal:

Seminars in Cell & Developmental Biology

Year:

2018

Language:

english

File:

PDF, 2.44 MB

english, 2018

82

Author Correction: Quantitative 3-D morphometric analysis of individual dendritic spines

Basu, Subhadip, Saha, Punam Kumar, Roszkowska, Matylda, Magnowska, Marta, Baczynska, Ewa, Das, Nirmal, Plewczynski, Dariusz, Wlodarczyk, Jakub

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 663 KB

english, 2018

83

Emerging and threatening infectious diseases

Basu, Subhadip, Plewczynski, Dariusz

Journal:

Briefings in Functional Genomics

Year:

2018

Language:

english

File:

PDF, 144 KB

english, 2018

84

Intermingling of chromosome territories

Szczepińska, Teresa, Rusek, Anna Maria, Plewczynski, Dariusz

Journal:

Genes, Chromosomes and Cancer

Year:

2019

File:

PDF, 1.45 MB

2019

85

Machine learning polymer models of three-dimensional chromatin organization in human lymphoblastoid cells

Al Bkhetan, Ziad, Kadlof, Michal, Kraft, Agnieszka, Plewczynski, Dariusz

Journal:

Year:

2019

Language:

english

File:

PDF, 2.18 MB

english, 2019

86

Learning directed acyclic graphs by determination of candidate causes for discrete variables

Rezaei Tabar, Vahid, Zareifard, Hamid, Salimi, Selva, Plewczynski, Dariusz

Journal:

Journal of Statistical Computation and Simulation

Year:

2019

Language:

english

File:

PDF, 1.91 MB

english, 2019

87

[ACM Press the Genetic and Evolutionary Computation Conference Companion - Prague, Czech Republic (2019.07.13-2019.07.17)] Proceedings of the Genetic and Evolutionary Computation Conference Companion on - GECCO '19 - A new evolutionary rough fuzzy integrated machine learning technique for microRNA selection using next-generation sequencing data of breast cancer

Sarkar, Jnanendra Prasad, Saha, Indrajit, Rakshit, Somnath, Pal, Monalisa, Wlasnowolski, Michal, Sarkar, Anasua, Maulik, Ujjwal, Plewczynski, Dariusz

Year:

2019

Language:

english

File:

PDF, 9.55 MB

english, 2019

88

An empirical Bayes approach for learning directed acyclic graph using MCMC algorithm

Rezaei Tabar, Vahid, Zareifard, Hamid, Salimi, Selva, Plewczynski, Dariusz

Journal:

Statistical Analysis and Data Mining

Year:

2019

Language:

english

File:

PDF, 1.91 MB

english, 2019

89

Spatial chromatin architecture alteration by structural variations in human genomes at the population scale

Sadowski, Michal, Kraft, Agnieszka, Szalaj, Przemyslaw, Wlasnowolski, Michal, Tang, Zhonghui, Ruan, Yijun, Plewczynski, Dariusz

Journal:

Year:

2019

Language:

english

File:

PDF, 8.01 MB

english, 2019

90

A Multivariate Negative-Binomial Model with Random Effects for Differential Gene-Expression Analysis of Correlated mRNA Sequencing Data

Kazakiewicz, Denis, Claesen, Jürgen, Górczak, Katarzyna, Plewczynski, Dariusz, Burzykowski, Tomasz

Journal:

Journal of Computational Biology

Year:

2019

Language:

english

File:

PDF, 171 KB

english, 2019

91

Aggregated Network Centrality Shows Non-Random Structure of Genomic and Proteomic Networks

Halder, Anup Kumar, Denkiewicz, Michał, Sengupta, Kaustav, Basu, Subhadip, Plewczynski, Dariusz

Journal:

Year:

2019

Language:

english

File:

PDF, 4.54 MB

english, 2019

92

Spring Model – chromatin modeling tool based on OpenMM

Kadlof, Michal, Rozycka, Julia, Plewczynski, Dariusz

Journal:

Year:

2019

File:

PDF, 2.03 MB

2019

93

Identification of Breast Cancer Subtype Specific MicroRNAs Using Survival Analysis to Find Their Role in Transcriptomic Regulation

Denkiewicz, Michał, Saha, Indrajit, Rakshit, Somnath, Sarkar, Jnanendra Prasad, Plewczynski, Dariusz

Journal:

Frontiers in Genetics

Year:

2019

File:

PDF, 6.41 MB

2019

94

The Mixture of Autoregressive Hidden Markov Models of Morphology for Dentritic Spines During Activation Process

Urban, Paulina, Rezaei Tabar, Vahid, Denkiewicz, MichaÅ, Bokota, Grzegorz, Das, Nirmal, Basu, Subhadip, Plewczynski, Dariusz

Journal:

Journal of Computational Biology

Year:

2020

Language:

english

File:

PDF, 2.95 MB

english, 2020

95

Chromatin topology reorganization and transcription repression by PML-RARÎ± in acute promyeloid leukemia

Wang, Ping, Tang, Zhonghui, Lee, Byoungkoo, Zhu, Jacqueline Jufen, Cai, Liuyang, Szalaj, Przemyslaw, Tian, Simon Zhongyuan, Zheng, Meizhen, Plewczynski, Dariusz, Ruan, Xiaoan, Liu, Edison T., Wei, Chi

Journal:

Year:

2020

File:

PDF, 3.39 MB

2020

96

JUPPI: A multi-level feature based method for PPI prediction and a refined strategy for performance assessment

Halder, Anup Kumar, Bandyopadhyay, Soumyendu Sekhar, Chatterjee, Piyali, Nasipuri, Mita, Plewczynski, Dariusz, Basu, Subhadip

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2020

File:

PDF, 3.50 MB

2020

97

Free energy-based model of CTCF-mediated chromatin looping in the human genome

Dawson, Wayne, Lazniewski, Michal, Plewczynski, Dariusz

Journal:

Year:

2020

File:

PDF, 3.34 MB

2020

98

Identification of miRNA Biomarkers for Diverse Cancer Types Using Statistical Learning Methods at the Whole-Genome Scale

Sarkar, Jnanendra Prasad, Saha, Indrajit, Lancucki, Adrian, Ghosh, Nimisha, Wlasnowolski, Michal, Bokota, Grzegorz, Dey, Ashmita, Lipinski, Piotr, Plewczynski, Dariusz

Journal:

Frontiers in Genetics

Year:

2020

File:

PDF, 4.87 MB

2020

99

[Advances in Intelligent Systems and Computing] Proceedings of International Conference on Frontiers in Computing and Systems Volume 1255 (COMSYS 2020) || Follicle Segmentation from Ovarian USG Image Using Horizontal Window Filtering and Filled Convex Hull Technique

Bhattacharjee, Debotosh, Kole, Dipak Kumar, Dey, Nilanjan, Basu, Subhadip, Plewczynski, Dariusz

Year:

2021

File:

PDF, 383 KB

2021

100

[Advances in Intelligent Systems and Computing] Proceedings of International Conference on Frontiers in Computing and Systems Volume 1255 (COMSYS 2020) || Test-Bench Setup for Testing and Calibration of a Newly Developed STS/MUCH-XYTER ASIC for CBM-MUCH Detectors

Bhattacharjee, Debotosh, Kole, Dipak Kumar, Dey, Nilanjan, Basu, Subhadip, Plewczynski, Dariusz

Year:

2021

File:

PDF, 605 KB

2021