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1

Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier

Porter, Teresita M., Gibson, Joel F., Shokralla, Shadi, Baird, Donald J., Golding, G. Brian, Hajibabaei, Mehrdad

Journal:

Molecular Ecology Resources

Year:

2014

Language:

english

File:

PDF, 386 KB

english, 2014

2

Fruiting body and soil rDNA sampling detects complementary assemblage of Agaricomycotina (Basidiomycota, Fungi) in a hemlock-dominated forest plot in southern Ontario

TERESITA M. PORTER, JANE E. SKILLMAN, JEAN-MARC MONCALVO

Journal:

Molecular Ecology

Year:

2008

Language:

english

File:

PDF, 356 KB

english, 2008

3

Scaling up: A guide to high throughput genomic approaches for biodiversity analysis

Porter, Teresita M., Hajibabaei, Mehrdad

Journal:

Molecular Ecology

Year:

2018

Language:

english

File:

PDF, 612 KB

english, 2018

4

Automated high throughput animal CO1 metabarcode classification

Porter, Teresita M., Hajibabaei, Mehrdad

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.38 MB

english, 2018

5

Author Correction: DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient

Emilson, Caroline E., Thompson, Dean G., Venier, Lisa A., Porter, Teresita M., Swystun, Tom, Chartrand, Derek, Capell, Scott, Hajibabaei, Mehrdad

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.10 MB

english, 2018

6

Soil microbiomes associated with two dominant Costa Rican tree species, and implications for remediation: A case study from a Costa Rican conservation area

McGee, Katie M., Eaton, William D., Porter, Teresita M., Shokralla, Shadi, Hajibabaei, Mehrdad

Journal:

Applied Soil Ecology

Year:

2019

Language:

english

File:

PDF, 1022 KB

english, 2019

7

Differences in the soil microbiomes of Pentaclethra macroloba across tree size and in contrasting land use histories

McGee, Katie M., Eaton, William D., Porter, Teresita M., Hajibabaei, Mehrdad

Journal:

Year:

2020

File:

PDF, 906 KB

2020

8

Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons?

Teresita M. Porter, G. Brian Golding

Journal:

New Phytologist

Year:

2011

Language:

english

File:

PDF, 549 KB

english, 2011

9

Molecular phylogeny of the Blastocladiomycota (Fungi) based on nuclear ribosomal DNA

Teresita M. Porter, Wallace Martin, Timothy Y. James, Joyce E. Longcore, Frank H. Gleason, Peter H. Adler, Peter M. Letcher, Rytas Vilgalys

Journal:

Year:

2011

Language:

english

File:

PDF, 845 KB

english, 2011

10

Rapid Degradation of Deepwater Horizon Spilled Oil by Indigenous Microbial Communities in Louisiana Saltmarsh Sediments

Mahmoudi, Nagissa, Porter, Teresita M., Zimmerman, Andrew R., Fulthorpe, Roberta R., Kasozi, Gabriel N., Silliman, Brian R., Slater, Greg F.

Journal:

Environmental Science & Technology

Year:

2013

Language:

english

File:

PDF, 1.63 MB

english, 2013

11

Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small-scale reproducibility

Porter, Teresita M., Golding, G. Brian, King, Christine, Froese, Duane, Zazula, Grant, Poinar, Hendrik N.

Journal:

Molecular Ecology Resources

Year:

2013

Language:

english

File:

PDF, 332 KB

english, 2013

12

Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error

Porter, Teresita M., Golding, G. Brian, Stajich, Jason E.

Journal:

Year:

2012

Language:

english

File:

PDF, 291 KB

english, 2012

13

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

Nilsson, R. Henrik, Tedersoo, Leho, Abarenkov, Kessy, Ryberg, Martin, Kristiansson, Erik, Hartmann, Martin, Schoch, Conrad L., Nylander, Johan A. A., Bergsten, Johannes, Porter, Teresita M., Jumpponen

Journal:

Year:

2012

Language:

english

File:

PDF, 4.50 MB

english, 2012

14

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform

Shokralla, Shadi, Porter, Teresita M., Gibson, Joel F., Dobosz, Rafal, Janzen, Daniel H., Hallwachs, Winnie, Golding, G. Brian, Hajibabaei, Mehrdad

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.41 MB

english, 2015

15

A Phylogeny for Kingdom Fungi (Deep Hypha) || The Cantharelloid Clade: Dealing with Incongruent Gene Trees and Phylogenetic Reconstruction Methods

Jean-Marc Moncalvo, R. Henrik Nilsson, Brenda Koster, Susie M. Dunham, Torsten Bernauer, P. Brandon Matheny, Teresita M. Porter, Simona Margaritescu, Michael Weiß, Sigisfredo Garnica, Eric Danell, Git

Journal:

Year:

2006

Language:

english

File:

PDF, 2.14 MB

english, 2006

16

Are similarity-or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons?

Teresita M. Porter and G. Brian Golding

Journal:

New Phytologist

Year:

2011

Language:

english

File:

PDF, 1.41 MB

english, 2011

17

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

Nilsson, R. Henrik, Tedersoo, Leho, Ryberg, Martin, Kristiansson, Erik, Hartmann, Martin, Unterseher, Martin, Porter, Teresita M., Bengtsson-Palme, Johan, Walker, Donald M., de Sousa, Filipe, Gamper,

Year:

2015

Language:

english

File:

PDF, 1.11 MB

english, 2015

18

Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array

Devault, Alison M., McLoughlin, Kevin, Jaing, Crystal, Gardner, Shea, Porter, Teresita M., Enk, Jacob M., Thissen, James, Allen, Jonathan, Borucki, Monica, DeWitte, Sharon N., Dhody, Anna N., Poinar,

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.46 MB

english, 2015

19

The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods

Moncalvo, Jean-Marc, Nilsson, R. Henrik, Koster, Brenda, Dunham, Susie M., Bernauer, Torsten, Matheny, P. Brandon, Porter, Teresita M., Margaritescu, Simona, Weiß, Michael, Garnica, Sigisfredo, Danell

Journal:

Year:

2006

Language:

english

File:

PDF, 3.38 MB

english, 2006

20

DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient

Emilson, Caroline E., Thompson, Dean G., Venier, Lisa A., Porter, Teresita M., Swystun, Tom, Chartrand, Derek, Capell, Scott, Hajibabaei, Mehrdad

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.14 MB

english, 2017

21

Over 2.5 million COI sequences in GenBank and growing

Porter, Teresita M., Hajibabaei, Mehrdad, Arthofer, Wolfgang

Journal:

Year:

2018

Language:

english

File:

PDF, 1.37 MB

english, 2018

22

Metabarcoding of storage ethanol vs. conventional morphometric identification in relation to the use of stream macroinvertebrates as ecological indicators in forest management

Erdozain, Maitane, Thompson, Dean G., Porter, Teresita M., Kidd, Karen A., Kreutzweiser, David P., Sibley, Paul K., Swystun, Tom, Chartrand, Derek, Hajibabaei, Mehrdad

Journal:

Ecological Indicators

Year:

2019

Language:

english

File:

PDF, 1.65 MB

english, 2019

23

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems

Hajibabaei, Mehrdad, Porter, Teresita M., Wright, Michael, Rudar, Josip, Ramaiah, Arunachalam

Journal:

Year:

2019

Language:

english

File:

PDF, 1.53 MB

english, 2019

24

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems

Hajibabaei, Mehrdad, Porter, Teresita M., Wright, Michael, Rudar, Josip, Ramaiah, Arunachalam

Journal:

Year:

2019

File:

PDF, 1.53 MB

2019

25

Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicators

Porter, Teresita M., Morris, Dave M., Basiliko, Nathan, Hajibabaei, Mehrdad, Doucet, Daniel, Bowman, Susan, Emilson, Erik J. S., Emilson, Caroline E., Chartrand, Derek, Wainio-Keizer, Kerrie, Séguin,

Journal:

Scientific Reports

Year:

2019

File:

PDF, 1.70 MB

2019

26

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples

Hajibabaei, Mehrdad, Porter, Teresita M., Robinson, Chloe V., Baird, Donald J., Shokralla, Shadi, Wright, Michael T. G., Doi, Hideyuki

Journal:

Year:

2019

File:

PDF, 1.55 MB

2019

27

DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness

Bush, Alex, Monk, Wendy A., Compson, Zacchaeus G., Peters, Daniel L., Porter, Teresita M., Shokralla, Shadi, Wright, Michael T. G., Hajibabaei, Mehrdad, Baird, Donald J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

Language:

english

File:

PDF, 1.15 MB

english, 2020

28

Putting COI Metabarcoding in Context: The Utility of Exact Sequence Variants (ESVs) in Biodiversity Analysis

Porter, Teresita M., Hajibabaei, Mehrdad

Journal:

Frontiers in Ecology and Evolution

Year:

2020

File:

PDF, 1.11 MB

2020

29

Drivers of tropical soil invertebrate community composition and richness across tropical secondary forests using DNA metasystematics

McGee, Katie M., Porter, Teresita M., Wright, Michael, Hajibabaei, Mehrdad

Journal:

Scientific Reports

Year:

2020

File:

PDF, 1.46 MB

2020