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51

BioJava: an open-source framework for bioinformatics

Holland, R. C. G., Down, T. A., Pocock, M., Prlic, A., Huen, D., James, K., Foisy, S., Drager, A., Yates, A., Heuer, M., Schreiber, M. J.

Journal:

Year:

2008

Language:

english

File:

PDF, 69 KB

english, 2008

52

Characteristics of NK Cell Migration Early after Vaccinia Infection

Prlic, M., Gibbs, J., Jameson, S. C.

Journal:

The Journal of Immunology

Year:

2005

Language:

english

File:

PDF, 689 KB

english, 2005

53

Cutting Edge: -Catenin Is Dispensable for T Cell Effector Differentiation, Memory Formation, and Recall Responses

Prlic, M., Bevan, M. J.

Journal:

The Journal of Immunology

Year:

2011

Language:

english

File:

PDF, 1.30 MB

english, 2011

54

Distinct Effects of STAT5 Activation on CD4+ and CD8+ T Cell Homeostasis: Development of CD4+CD25+ Regulatory T Cells versus CD8+ Memory T Cells

Burchill, M. A., Goetz, C. A., Prlic, M., O'Neil, J. J., Harmon, I. R., Bensinger, S. J., Turka, L. A., Brennan, P., Jameson, S. C., Farrar, M. A.

Journal:

The Journal of Immunology

Year:

2003

Language:

english

File:

PDF, 616 KB

english, 2003

55

IMMUNOLOGY: An Antibody Paradox, Resolved

Journal:

Year:

2006

Language:

english

File:

PDF, 2.65 MB

english, 2006

56

BioJava: an open-source framework for bioinformatics in 2012

Prlic, A., Yates, A., Bliven, S. E., Rose, P. W., Jacobsen, J., Troshin, P. V., Chapman, M., Gao, J., Koh, C. H., Foisy, S., Holland, R., Rimsa, G., Heuer, M. L., Brandstatter-Muller, H., Bourne, P. E

Journal:

Year:

2012

Language:

english

File:

PDF, 213 KB

english, 2012

57

Ballistic Trauma in 1991/92 War in Osijek, Croatia: Shell Fragments Versus Bullets

Lovric, Z., Kuvezdic, H., Prlic, D., Wertheimer, B., candrlic, K.

Journal:

Journal of the Royal Army Medical Corps

Year:

1997

Language:

english

File:

PDF, 268 KB

english, 1997

58

Radiation-induced chromosomal aberrations and haematological alterations in hospital workers

Rozgaj, R., Kašuba, V., Šentija, K., Prlić, I.

Journal:

Occupational Medicine

Year:

1999

Language:

english

File:

PDF, 480 KB

english, 1999

59

Characterization of workplaces in interventional radiology using active dosemeters ALARA OD

Prlic, I., Suric-Mihic, M., Milkovic-Kraus, S., Mestrovic, T., Vrtar, M.

Journal:

Radiation Protection Dosimetry

Year:

2006

Language:

english

File:

PDF, 162 KB

english, 2006

60

The RCSB Protein Data Bank: redesigned web site and web services

Rose, P. W., Beran, B., Bi, C., Bluhm, W. F., Dimitropoulos, D., Goodsell, D. S., Prlic, A., Quesada, M., Quinn, G. B., Westbrook, J. D., Young, J., Yukich, B., Zardecki, C., Berman, H. M., Bourne, P.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 9.90 MB

english, 2011

61

In Vivo Survival and Homeostatic Proliferation of Natural Killer Cells

Prlic, M., Blazar, B. R., Farrar, M. A., Jameson, S. C.

Journal:

Journal of Experimental Medicine

Year:

2003

Language:

english

File:

PDF, 268 KB

english, 2003

62

Adding Some SPICE to DAS

Prlic, A., Down, T. A., Hubbard, T. J. P.

Journal:

Year:

2005

Language:

english

File:

PDF, 219 KB

english, 2005

63

IL-12 Enhances CD8 T Cell Homeostatic Expansion

Kieper, W. C., Prlic, M., Schmidt, C. S., Mescher, M. F., Jameson, S. C.

Journal:

The Journal of Immunology

Year:

2001

Language:

english

File:

PDF, 504 KB

english, 2001

64

Exploring regulatory mechanisms of CD8+ T cell contraction

Prlic, M., Bevan, M. J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2008

Language:

english

File:

PDF, 1.17 MB

english, 2008

65

Multiple Choices: Regulation of Memory CD8 T Cell Generation and Homeostasis by Interleukin (IL)-7 and IL-15

Journal:

Journal of Experimental Medicine

Year:

2002

Language:

english

File:

PDF, 128 KB

english, 2002

66

WILMA--automated annotation of protein sequences

Prlic, A., Domingues, F. S., Lackner, P., Sippl, M. J.

Journal:

Year:

2004

Language:

english

File:

PDF, 38 KB

english, 2004

67

Small-flowered bittercress, Cardamine parviflora L. (Brassicaceae), a new species of the Croatian flora

Journal:

Acta Botanica Croatica

Year:

2015

Language:

english

File:

PDF, 1.18 MB

english, 2015

68

The Protein Feature Ontology: a tool for the unification of protein feature annotations

Reeves, G. A., Eilbeck, K., Magrane, M., O'Donovan, C., Montecchi-Palazzi, L., Harris, M. A., Orchard, S., Jimenez, R. C., Prlic, A., Hubbard, T. J. P., Hermjakob, H., Thornton, J. M.

Journal:

Year:

2008

Language:

english

File:

PDF, 278 KB

english, 2008

69

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

Didelot, Xavier, Wilson, Daniel J., Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.71 MB

english, 2015

70

Duration of the initial TCR stimulus controls the magnitude but not functionality of the CD8+ T cell response

Journal:

Journal of Experimental Medicine

Year:

2006

Language:

english

File:

PDF, 1.39 MB

english, 2006

71

A Real-Time All-Atom Structural Search Engine for Proteins

Gonzalez, Gabriel, Hannigan, Brett, DeGrado, William F., Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.45 MB

english, 2014

72

A Toolbox for Representational Similarity Analysis

Nili, Hamed, Wingfield, Cai, Walther, Alexander, Su, Li, Marslen-Wilson, William, Kriegeskorte, Nikolaus, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.29 MB

english, 2014

73

Software for Computing and Annotating Genomic Ranges

Lawrence, Michael, Huber, Wolfgang, Pagès, Hervé, Aboyoun, Patrick, Carlson, Marc, Gentleman, Robert, Morgan, Martin T., Carey, Vincent J., Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 520 KB

english, 2013

74

ProteinHistorian: Tools for the Comparative Analysis of Eukaryote Protein Origin

Capra, John A., Williams, Alexander G., Pollard, Katherine S., Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 661 KB

english, 2012

75

eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models

Brylinski, Michal, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.96 MB

english, 2014

76

Homeostatic Expansion Occurs Independently of Costimulatory Signals

Prlic, M., Blazar, B. R., Khoruts, A., Zell, T., Jameson, S. C.

Journal:

The Journal of Immunology

Year:

2001

Language:

english

File:

PDF, 376 KB

english, 2001

77

rDock: A Fast, Versatile and Open Source Program for Docking Ligands to Proteins and Nucleic Acids

Ruiz-Carmona, Sergio, Alvarez-Garcia, Daniel, Foloppe, Nicolas, Garmendia-Doval, A. Beatriz, Juhos, Szilveszter, Schmidtke, Peter, Barril, Xavier, Hubbard, Roderick E., Morley, S. David, Prlic, Andrea

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 270 KB

english, 2014

78

Quality assurance for the query and distribution systems of the RCSB Protein Data Bank

Bluhm, W. F., Beran, B., Bi, C., Dimitropoulos, D., Prlic, A., Quinn, G. B., Rose, P. W., Shah, C., Young, J., Yukich, B., Berman, H. M., Bourne, P. E.

Journal:

Year:

2011

Language:

english

File:

PDF, 881 KB

english, 2011

79

The CD8 T cell response to vaccinia virus exhibits site-dependent heterogeneity of functional responses

Xiao, Z., Curtsinger, J. M., Prlic, M., Jameson, S. C., Mescher, M. F.

Journal:

International Immunology

Year:

2007

Language:

english

File:

PDF, 687 KB

english, 2007

80

Will Widgets and Semantic Tagging Change Computational Biology?

Bourne, Philip E., Beran, Bojan, Bi, Chunxiao, Bluhm, Wolfgang, Dunbrack, Roland, Prlić, Andreas, Quinn, Greg, Rose, Peter, Shah, Raship, Tao, Wendy, Weitzner, Brian, Yukich, Ben, Nussinov, Ruth

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 432 KB

english, 2010

81

The PLOS Computational Biology Software Section

Prlić, Andreas, Lapp, Hilmar

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 120 KB

english, 2012

82

VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data

Daunizeau, Jean, Adam, Vincent, Rigoux, Lionel, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 3.23 MB

english, 2014

83

NESmapper: Accurate Prediction of Leucine-Rich Nuclear Export Signals Using Activity-Based Profiles

Kosugi, Shunichi, Yanagawa, Hiroshi, Terauchi, Ryohei, Tabata, Satoshi, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.98 MB

english, 2014

84

Using Biological Pathway Data with Paxtools

Demir, Emek, Babur, Özgün, Rodchenkov, Igor, Aksoy, Bülent Arman, Fukuda, Ken I., Gross, Benjamin, Sümer, Onur Selçuk, Bader, Gary D., Sander, Chris, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 449 KB

english, 2013

85

Ten Simple Rules for the Open Development of Scientific Software

Prlić, Andreas, Procter, James B.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 133 KB

english, 2012

86

CeleST: Computer Vision Software for Quantitative Analysis of C. elegans Swim Behavior Reveals Novel Features of Locomotion

Restif, Christophe, Ibáñez-Ventoso, Carolina, Vora, Mehul M., Guo, Suzhen, Metaxas, Dimitris, Driscoll, Monica, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.95 MB

english, 2014

87

Total Occupational Exposure During Characterisation, Conditioning, and Securing of Radioactive Sealed Sources: A New Dosimetric Concept Using Active Electronic Dosimeters

Prlić, Ivica, Mihić, Marija, Marović, Gordana, Meštrović, Tomislav

Journal:

Archives of Industrial Hygiene and Toxicology

Year:

2009

Language:

english

File:

PDF, 2.80 MB

english, 2009

88

Podbat: A Novel Genomic Tool Reveals Swr1-Independent H2A.Z Incorporation at Gene Coding Sequences through Epigenetic Meta-Analysis

Sadeghi, Laia, Bonilla, Carolina, Strålfors, Annelie, Ekwall, Karl, Svensson, J. Peter, Prlić, Andreas

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 484 KB

english, 2011

89

OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis

Finak, Greg, Frelinger, Jacob, Jiang, Wenxin, Newell, Evan W., Ramey, John, Davis, Mark M., Kalams, Spyros A., De Rosa, Stephen C., Gottardo, Raphael, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.37 MB

english, 2014

90

Pre-calculated protein structure alignments at the RCSB PDB website

Prlic, A., Bliven, S., Rose, P. W., Bluhm, W. F., Bizon, C., Godzik, A., Bourne, P. E.

Journal:

Year:

2010

Language:

english

File:

PDF, 275 KB

english, 2010

91

SISYPHUS--structural alignments for proteins with non-trivial relationships

Andreeva, A., Prlic, A., Hubbard, T. J. P., Murzin, A. G.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 7.13 MB

english, 2007

92

RELATION BETWEEN MAJOR AND MINOR DEPRESSION AND HEART RATE, HEART-RATE VARIABILITY, AND CLINICAL CHARACTERISTICS OF PATIENTS WITH ACUTE CORONARY SYNDROME 1

ČATIPOVIĆ-VESELICA, KATIJA, GALIĆ, ANDREA, JELIĆ, KREŠIMIR, GLAVAŠ, VEDRANA BARABAN, ŠARIĆ, SANDRA, PRLIĆ, NADA, ČATIPOVIĆ, BRANIMIR

Journal:

Psychological Reports

Year:

2007

Language:

english

File:

PDF, 425 KB

english, 2007

93

Structure-derived substitution matrices for alignment of distantly related sequences

A. Prlic, F. S. Domingues, M. J. Sippl

Year:

2000

Language:

english

File:

PDF, 190 KB

english, 2000

94

Inflammation and TCR Signal Strength Determine the Breadth of the T Cell Response in a Bim-Dependent Manner

Zehn, D., Roepke, S., Weakly, K., Bevan, M. J., Prlic, M.

Journal:

The Journal of Immunology

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

95

The validity of a non-radiologist reader in identifying cam and pincer femoroacetabular impingement (FAI) using plain radiography

C. Ratzlaff, C. Zhang, J. Korzan, L. Josey, H. Wong, J. Cibere, H. M. Prlic, J. A. Kopec, J. M. Esdaile, L. C. Li, M. Barber, B. B. Forster

Journal:

Rheumatology International

Year:

2016

Language:

english

File:

PDF, 742 KB

english, 2016

96

Binding of SGTA to Rpn13 selectively modulates protein quality control

P. Leznicki, J. Korac-prlic, K. Kliza, K. Husnjak, Y. Nyathi, I. Dikic, S. High

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

97

Verwendung der Harnblase zur kontinenten oder inkontinenten Harnableitung

Kröpfl, D., Verweyen, A., Prlic, D., Schäpertöns, T.

Journal:

Aktuelle Urologie

Year:

1997

File:

PDF, 1018 KB

1997

98

Medical thermography (digital infrared thermal imaging – DITI) in paediatric forearm fractures – A pilot study

Ćurković, S., Antabak, A., Halužan, D., Luetić, T., Prlić, I., Šiško, J.

Journal:

Year:

2015

Language:

english

File:

PDF, 756 KB

english, 2015

99

Thermal changes during healing of distal radius fractures—Preliminary findings

Haluzan, Damir, Davila, Slavko, Antabak, Anko, Dobric, Ivan, Stipic, Jagoda, Augustin, Goran, Ehrenfreund, Tin, Prlic, Ivica

Journal:

Year:

2015

Language:

english

File:

PDF, 546 KB

english, 2015

100

PP.11.19

Vrkic, T. Zeljkovic, Coric, M., Laganovic, M., Kos, J., Dika, Z., Fistrek-Prlic, M., Zivko, M., Premuzic, V., Brunetta-Gavranic, B., Kes, P., Jelakovic, B.

Journal:

Journal of Hypertension

Year:

2015

Language:

english

File:

PDF, 67 KB

english, 2015

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