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1

Analysis of F9 point mutations and their correlation to severity of haemophilia B disease

N. Hamasaki-Katagiri, R. Salari, V. L. Simhadri, S. C. Tseng, E. Needlman, N. C. Edwards, Z. E. Sauna, V. Grigoryan, A. A. Komar, T. M. Przytycka, C. Kimchi-Sarfaty

Journal:

Year:

2012

Language:

english

File:

PDF, 204 KB

english, 2012

2

Parallel recognition of complement reducible graphs and cotree construction

D.G. Kirkpatrick, T. Przytycka

Journal:

Discrete Applied Mathematics

Year:

1990

Language:

english

File:

PDF, 1.06 MB

english, 1990

3

Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture

Jothi, Raja, Balaji, S, Wuster, Arthur, Grochow, Joshua A, Gsponer, Jörg, Przytycka, Teresa M, Aravind, L, Babu, M Madan

Journal:

Molecular Systems Biology

Year:

2009

Language:

english

File:

PDF, 2.58 MB

english, 2009

4

Chapter 5: Network Biology Approach to Complex Diseases

Cho, Dong-Yeon, Kim, Yoo-Ah, Przytycka, Teresa M., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 394 KB

english, 2012

5

MONET: Multi-omic module discovery by omic selection

Rappoport, Nimrod, Safra, Roy, Shamir, Ron, Przytycka, Teresa M.

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 4.05 MB

2020

6

The Optimal Alphabetic Tree Problem Revisited

Lawrence L Larmore, Teresa M Przytycka

Journal:

Journal of Algorithms

Year:

1998

Language:

english

File:

PDF, 202 KB

english, 1998

7

A Parallel Algorithm for Optimum Height-Limited Alphabetic Binary Trees

Lawrence L. Larmore, Teresa M. Przytycka

Journal:

Journal of Parallel and Distributed Computing

Year:

1996

Language:

english

File:

PDF, 317 KB

english, 1996

8

Grid intersection graphs and boxicity

S. Bellantoni, I. Ben-Arroyo Hartman, T. Przytycka, S. Whitesides

Journal:

Discrete Mathematics

Year:

1993

Language:

english

File:

PDF, 558 KB

english, 1993

9

On the agreement of many trees

Martin Farach, Teresa M Przytycka, Mikkel Thorup

Journal:

Information Processing Letters

Year:

1995

Language:

english

File:

PDF, 431 KB

english, 1995

10

A simple, efficient algorithm for maximum finding on rings

Lisa Higham, Teresa Przytycka

Journal:

Information Processing Letters

Year:

1996

Language:

english

File:

PDF, 560 KB

english, 1996

11

A simple parallel tree contraction algorithm

K Abrahamson, N Dadoun, D.G Kirkpatrick, T Przytycka

Journal:

Journal of Algorithms

Year:

1989

Language:

english

File:

PDF, 952 KB

english, 1989

12

Parallel algorithms for parity graphs

T Przytycka, D.G Corneil

Journal:

Journal of Algorithms

Year:

1991

Language:

english

File:

PDF, 782 KB

english, 1991

13

Scale-free networks versus evolutionary drift

Teresa M. Przytycka, Yi-Kuo Yu

Journal:

Computational Biology and Chemistry

Year:

2004

Language:

english

File:

PDF, 217 KB

english, 2004

14

A simple construction of high representativity triangulations

Teresa M. Przytycka, Józef H. Przytycki

Journal:

Discrete Mathematics

Year:

1997

Language:

english

File:

PDF, 962 KB

english, 1997

15

On the complexity of string folding

Mike Paterson, Teresa Przytycka

Journal:

Discrete Applied Mathematics

Year:

1996

Language:

english

File:

PDF, 1001 KB

english, 1996

16

Fold classification based on secondary structure – how much is gained by including loop topology?

Jieun Jeong, Piotr Berman, Teresa Przytycka

Journal:

BMC Structural Biology

Year:

2006

Language:

english

File:

PDF, 594 KB

english, 2006

17

Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification

Elena Zotenko, Dianne P O'Leary, Teresa M Przytycka

Journal:

BMC Structural Biology

Year:

2006

Language:

english

File:

PDF, 1.18 MB

english, 2006

18

Structural footprinting in protein structure comparison: the impact of structural fragments

Elena Zotenko, Rezarta Islamaj Dogan, W John Wilbur, Dianne P O'Leary, Teresa M Przytycka

Journal:

BMC Structural Biology

Year:

2007

Language:

english

File:

PDF, 2.54 MB

english, 2007

19

Network integration meets network dynamics

Teresa M Przytycka, Yoo-Ah Kim

Journal:

Year:

2010

Language:

english

File:

PDF, 392 KB

english, 2010

20

Systems-biology dissection of eukaryotic cell growth

Teresa M Przytycka, Justen Andrews

Journal:

Year:

2010

Language:

english

File:

PDF, 2.53 MB

english, 2010

21

Significance of conformational biases in Monte Carlo simulations of protein folding: Lessons from Metropolis–Hastings approach

Teresa Przytycka

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 277 KB

english, 2004

22

Predicting protein domain interactions from coevolution of conserved regions

Maricel G. Kann, Raja Jothi, Praveen F. Cherukuri, Teresa M. Przytycka

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 506 KB

english, 2007

23

Parallel algorithms for the hamiltonian cycle and hamiltonian path problems in semicomplete bipartite digraphs

J. Bang-Jensen, M. El Haddad, Y. Manoussakis, T. M. Przytycka

Journal:

Year:

1997

Language:

english

File:

PDF, 1.12 MB

english, 1997

24

Parallel maximum independent set in convex bipartite graphs

Artur Czumaj, Krzysztof Diks, Teresa M. Przytycka

Journal:

Information Processing Letters

Year:

1996

Language:

english

File:

PDF, 606 KB

english, 1996

25

10.1038/10728

Rose, George D., Przytycka, Teresa, Aurora, Rajeev

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 2.02 MB

english, 1999

26

Recursive domains in proteins

Teresa Przytycka, Rajgopal Srinivasan, George D. Rose

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 879 KB

english, 2002

27

Crystal Structures of the Outer Membrane Domain of Intimin and Invasin from Enterohemorrhagic E. coli and Enteropathogenic Y. pseudotuberculosis

James W. Fairman, Nathalie Dautin, Damian Wojtowicz, Wei Liu, Nicholas Noinaj, Travis J. Barnard, Eshwar Udho, Teresa M. Przytycka, Vadim Cherezov, Susan K. Buchanan

Journal:

Year:

2012

Language:

english

File:

PDF, 1.56 MB

english, 2012

28

State of the art: refinement of multiple sequence alignments

Saikat Chakrabarti, Christopher J Lanczycki, Anna R Panchenko, Teresa M Przytycka, Paul A Thiessen, Stephen H Bryant

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 146 KB

english, 2010

29

State of the art: refinement of multiple sequence alignments

Saikat Chakrabarti, Christopher J Lanczycki, Anna R Panchenko, Teresa M Przytycka, Paul A Thiessen, Stephen H Bryant

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 577 KB

english, 2006

30

Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment

Raja Jothi, Teresa M Przytycka, L Aravind

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.97 MB

english, 2007

31

Interrogating domain-domain interactions with parsimony based approaches

Katia S Guimarães, Teresa M Przytycka

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.17 MB

english, 2008

32

Differences in evolutionary pressure acting within highly conserved ortholog groups

Teresa M Przytycka, Raja Jothi, L Aravind, David J Lipman

Journal:

BMC Evolutionary Biology

Year:

2008

Language:

english

File:

PDF, 622 KB

english, 2008

33

Epigenetic functions enriched in transcription factors binding to mouse recombination hotspots

Wu, Min, Kwoh, Chee-Keong, Przytycka, Teresa M, Li, Jing, Zheng, Jie

Journal:

Proteome Science

Year:

2012

Language:

english

File:

PDF, 967 KB

english, 2012

34

The crosstalk between EGF, IGF, and Insulin cell signaling pathways - computational and experimental analysis

Rafal Zielinski, Pawel F Przytycki, Jie Zheng, David Zhang, Teresa M Przytycka, Jacek Capala

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 1.76 MB

english, 2009

35

Co-evolutionary Analysis of Domains in Interacting Proteins Reveals Insights into Domain–Domain Interactions Mediating Protein–Protein Interactions

Raja Jothi, Praveen F. Cherukuri, Asba Tasneem, Teresa M. Przytycka

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1.24 MB

english, 2006

36

Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree

Maricel G. Kann, Benjamin A. Shoemaker, Anna R. Panchenko, Teresa M. Przytycka

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

37

A Fast Algorithm For Optimum Height-Limited Alphabetic Binary Trees

Larmore, Lawrence L., Przytycka, Teresa M.

Journal:

SIAM Journal on Computing

Year:

1994

Language:

english

File:

PDF, 3.31 MB

english, 1994

38

Asymptotically Optimal Election on Weighted Rings

Higham, Lisa, Przytycka, Teresa

Journal:

SIAM Journal on Computing

Year:

1998

Language:

english

File:

PDF, 302 KB

english, 1998

39

An O ( n log n ) Algorithm for the Maximum Agreement Subtree Problem for Binary Trees

Cole, Richard, Farach-Colton, Martin, Hariharan, Ramesh, Przytycka, Teresa, Thorup, Mikkel

Journal:

SIAM Journal on Computing

Year:

2000

Language:

english

File:

PDF, 238 KB

english, 2000

40

Constructing Huffman Trees in Parallel

Larmore, Lawrence L., Przytycka, Teresa M.

Journal:

SIAM Journal on Computing

Year:

1995

Language:

english

File:

PDF, 858 KB

english, 1995

41

On a Lower Bound for Short Noncontractible Cycles in Embedded Graphs

Przytycka, T., Przytycki, J. H.

Journal:

SIAM Journal on Discrete Mathematics

Year:

1990

Language:

english

File:

PDF, 1.22 MB

english, 1990

42

Mediation ofDrosophilaautosomal dosage effects and compensation by network interactions

John H Malone, Dong-Yeon Cho, Nicolas R Mattiuzzo, Carlo G Artieri, Lichun Jiang, Ryan K Dale, Harold E Smith, Jennifer McDaniel, Sarah Munro, Marc Salit, Justen Andrews, Teresa M Przytycka, Brian Oli

Journal:

Year:

2012

Language:

english

File:

PDF, 2.97 MB

english, 2012

43

Transcription-dependent dynamic supercoiling is a short-range genomic force

Kouzine, Fedor, Gupta, Ashutosh, Baranello, Laura, Wojtowicz, Damian, Ben-Aissa, Khadija, Liu, Juhong, Przytycka, Teresa M, Levens, David

Journal:

Nature Structural and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 914 KB

english, 2013

44

[Lecture Notes in Computer Science] Advances in Bioinformatics and Computational Biology Volume 5676 || Comparing Methods for Multilabel Classification of Proteins Using Machine Learning Techniques

Guimarães, Katia S., Panchenko, Anna, Przytycka, Teresa M.

Year:

2009

Language:

english

File:

PDF, 228 KB

english, 2009

45

Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome

Jie Zheng, Pavel P Khil, R Daniel Camerini-Otero, Teresa M Przytycka

Journal:

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

46

Phenotypic variation meets systems biology

Teresa M Przytycka

Journal:

Year:

2009

Language:

english

File:

PDF, 171 KB

english, 2009

47

Predicting domain-domain interactions using a parsimony approach

Katia S Guimarães, Raja Jothi, Elena Zotenko, Teresa M Przytycka

Journal:

Year:

2006

Language:

english

File:

PDF, 534 KB

english, 2006

48

A Gene-Specific Method for Predicting Hemophilia-Causing Point Mutations

Hamasaki-Katagiri, Nobuko, Salari, Raheleh, Wu, Andrew, Qi, Yini, Schiller, Tal, Filiberto, Amanda C., Schisterman, Enrique F., Komar, Anton A., Przytycka, Teresa M., Kimchi-Sarfaty, Chava

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 448 KB

english, 2013

49

Parallel construction of binary trees with near optimal weighted path length

D. G. Kirkpatrick, T. Przytycka

Journal:

Year:

1996

Language:

english

File:

PDF, 1.30 MB

english, 1996

50

[Lecture Notes in Computer Science] Algorithms in Bioinformatics Volume 6833 || Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation

Przytycka, Teresa M., Sagot, Marie-France

Year:

2011

Language:

english

File:

PDF, 419 KB

english, 2011