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1

Speed breeding in growth chambers and glasshouses for crop breeding and model plant research

Ghosh, Sreya, Watson, Amy, Gonzalez-Navarro, Oscar E., Ramirez-Gonzalez, Ricardo H., Yanes, Luis, Mendoza-Suárez, Marcela, Simmonds, James, Wells, Rachel, Rayner, Tracey, Green, Phon, Hafeez, Amber, H

Journal:

Nature Protocols

Year:

2018

Language:

english

File:

PDF, 4.74 MB

english, 2018

2

RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat

Ramirez-Gonzalez, Ricardo H., Segovia, Vanesa, Bird, Nicholas, Fenwick, Paul, Holdgate, Sarah, Berry, Simon, Jack, Peter, Caccamo, Mario, Uauy, Cristobal

Journal:

Plant Biotechnology Journal

Year:

2015

Language:

english

File:

PDF, 917 KB

english, 2015

3

RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics

Thole, Vera, Bassard, Jean-Etienne, Ramírez-González, Ricardo, Trick, Martin, Ghasemi Afshar, Bijan, Breitel, Dario, Hill, Lionel, Foito, Alexandre, Shepherd, Louise, Freitag, Sabine, Nunes dos Santos

Journal:

Year:

2019

Language:

english

File:

PDF, 3.45 MB

english, 2019

4

RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics

Thole, Vera, Bassard, Jean-Etienne, Ramírez-González, Ricardo, Trick, Martin, Ghasemi Afshar, Bijan, Breitel, Dario, Hill, Lionel, Foito, Alexandre, Shepherd, Louise, Freitag, Sabine, Nunes dos Santos

Journal:

Year:

2019

File:

PDF, 3.45 MB

2019

5

Hotspots in the genomic architecture of field drought responses in wheat as breeding targets

Gálvez, Sergio, Mérida-García, Rosa, Camino, Carlos, Borrill, Philippa, Abrouk, Michael, Ramírez-González, Ricardo H., Biyiklioglu, Sezgi, Amil-Ruiz, Francisco, Dorado, Gabriel, Budak, Hikmet, Gonzale

Journal:

Functional & Integrative Genomics

Year:

2018

Language:

english

File:

PDF, 2.55 MB

english, 2018

6

A haplotype-led approach to increase the precision of wheat breeding

Brinton, Jemima, Ramirez-Gonzalez, Ricardo H., Simmonds, James, Wingen, Luzie, Orford, Simon, Griffiths, Simon, Haberer, Georg, Spannagl, Manuel, Walkowiak, Sean, Pozniak, Curtis, Uauy, Cristobal

Journal:

Communications Biology

Year:

2020

File:

PDF, 2.39 MB

2020

7

Multiple wheat genomes reveal global variation in modern breeding

Walkowiak, Sean, Gao, Liangliang, Monat, Cecile, Haberer, Georg, Kassa, Mulualem T., Brinton, Jemima, Ramirez-Gonzalez, Ricardo H., Kolodziej, Markus C., Delorean, Emily, Thambugala, Dinushika, Klymiu

Journal:

Year:

2020

File:

PDF, 31.60 MB

2020

8

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments

Ricardo H Ramirez-Gonzalez, Raoul Bonnal, Mario Caccamo, Daniel MacLean

Journal:

Source Code for Biology and Medicine

Year:

2012

Language:

english

File:

PDF, 192 KB

english, 2012

9

PolyMarker: A fast polyploid primer design pipeline: Fig. 1.

Ramirez-Gonzalez, Ricardo H., Uauy, Cristobal, Caccamo, Mario

Journal:

Year:

2015

Language:

english

File:

PDF, 158 KB

english, 2015

10

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby: Fig. 1.

Etherington, Graham J., Ramirez-Gonzalez, Ricardo H., MacLean, Dan

Journal:

Year:

2015

Language:

english

File:

PDF, 274 KB

english, 2015

11

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population

Hubbard, Amelia, Lewis, Clare M, Yoshida, Kentaro, Ramirez-Gonzalez, Ricardo H, de Vallavieille-Pope, Claude, Thomas, Jane, Kamoun, Sophien, Bayles, Rosemary, Uauy, Cristobal, Saunders, Diane

Journal:

Year:

2015

Language:

english

File:

PDF, 2.08 MB

english, 2015

12

Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics

Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Clavijo, Bernardo J., Waite, Darren, Davey, Robert P.

Journal:

Frontiers in Genetics

Year:

2013

Language:

english

File:

PDF, 661 KB

english, 2013

13

Evolution of an Eurasian Avian-like Influenza Virus in Naïve and Vaccinated Pigs

Murcia, Pablo R., Hughes, Joseph, Battista, Patrizia, Lloyd, Lucy, Baillie, Gregory J., Ramirez-Gonzalez, Ricardo H., Ormond, Doug, Oliver, Karen, Elton, Debra, Mumford, Jennifer A., Caccamo, Mario, K

Journal:

Year:

2012

Language:

english

File:

PDF, 1.40 MB

english, 2012

14

Perforación gástrica por linfoma MALT. Reporte de caso

López-Zamudio, José, Ramírez-González, Luis Ricardo, Núñez-Márquez, Julia, Fuentes Orozco, Clotilde, González Ojeda, Alejandro, Leonher-Ruezga, Karla Lisseth

Journal:

Cirugía y Cirujanos

Year:

2015

File:

PDF, 970 KB

2015

15

Angiosarcoma hepático y trasplante hepático: reporte de caso y revisión de bibliografía

Huerta-Orozco, Lorena Denisse, Leonher-Ruezga, Karla Lisseth, Ramírez-González, Luis Ricardo, Hermosillo-Sandoval, José Manuel, Sandoval-Alvarado, José de Jesús, Morán-Galaviz, Rubén Eduardo

Journal:

Cirugía y Cirujanos

Year:

2015

File:

PDF, 2.09 MB

2015

16

Nesidioblastosis en el adulto: reporte de un caso

Ramírez-González, Luis Ricardo, Sotelo-Álvarez, Jorge Arturo, Rojas-Rubio, Priscila, Macías-Amezcua, Michel Dassaejv, Orozco-Rubio, Rafael, Fuentes-Orozco, Clotilde

Journal:

Cirugía y Cirujanos

Year:

2015

File:

PDF, 1.49 MB

2015

17

Lipoma gástrico pediculado. Reporte de caso

López-Zamudio, José, Leonher-Ruezga, Karla Lisseth, Ramírez-González, Luis Ricardo, Razo Jiménez, Gladis, González-Ojeda, Alejandro, Fuentes-Orozco, Clotilde

Journal:

Cirugía y Cirujanos

Year:

2015

File:

PDF, 927 KB

2015

18

Alotrasplante de paratiroides: seguimiento a 2 años

Hermosillo-Sandoval, José Manuel, Leonher-Ruezga, Karla Lisseth, Jiménez-Gómez, José Alfredo, Fuentes-Orozco, Clotilde, González-Ojeda, Alejandro, Ramírez-González, Luis Ricardo

Journal:

Cirugía y Cirujanos

Year:

2015

File:

PDF, 1005 KB

2015

19

expVIP: a customisable RNA-seq data analysis and visualisation platform

Borrill, Philippa, Ramirez-Gonzalez, Ricardo, Uauy, Cristobal

Journal:

PLANT PHYSIOLOGY

Year:

2016

Language:

english

File:

PDF, 10.15 MB

english, 2016

20

Nesidioblastosis in the adult: A case report

Ramírez-González, Luis Ricardo, Sotelo-Álvarez, Jorge Arturo, Rojas-Rubio, Priscila, Macías-Amezcua, Michel Dassaejv, Orozco-Rubio, Rafael, Fuentes-Orozco, Clotilde

Journal:

Cirugía y Cirujanos (English Edition)

Year:

2015

File:

PDF, 1.49 MB

2015

21

Hepatic angiosarcoma and liver transplantation: case report and literature review

Huerta-Orozco, Lorena Denisse, Leonher-Ruezga, Karla Lisseth, Ramírez-González, Luis Ricardo, Hermosillo-Sandoval, José Manuel, Sandoval-Alvarado, José de Jesús, Morán-Galaviz, Rubén Eduardo

Journal:

Cirugía y Cirujanos (English Edition)

Year:

2015

File:

PDF, 2.12 MB

2015

22

Gastric perforation by MALT lymphoma. Case report

López-Zamudio, José, Ramírez-González, Luis Ricardo, Núñez-Márquez, Julia, Fuentes Orozco, Clotilde, González Ojeda, Alejandro, Leonher-Ruezga, Karla Lisseth

Journal:

Cirugía y Cirujanos (English Edition)

Year:

2015

File:

PDF, 876 KB

2015

23

Pedicled gastric lipoma. Case report

López-Zamudio, José, Leonher-Ruezga, Karla Lisseth, Ramírez-González, Luis Ricardo, Razo Jiménez, Gladis, González-Ojeda, Alejandro, Fuentes-Orozco, Clotilde

Journal:

Cirugía y Cirujanos (English Edition)

Year:

2015

File:

PDF, 929 KB

2015

24

Allogeneic parathyroid: 2-year follow-up

Hermosillo-Sandoval, José Manuel, Leonher-Ruezga, Karla Lisseth, Jiménez-Gómez, José Alfredo, Fuentes-Orozco, Clotilde, González-Ojeda, Alejandro, Ramírez-González, Luis Ricardo

Journal:

Cirugía y Cirujanos (English Edition)

Year:

2015

File:

PDF, 909 KB

2015

25

Genome sequence and genetic diversity of European ash trees

Sollars, Elizabeth S. A., Harper, Andrea L., Kelly, Laura J., Sambles, Christine M., Ramirez-Gonzalez, Ricardo H., Swarbreck, David, Kaithakottil, Gemy, Cooper, Endymion D., Uauy, Cristobal, Havlickov

Journal:

Year:

2016

Language:

english

File:

PDF, 6.68 MB

english, 2016

26

Uncovering hidden variation in polyploid wheat

Krasileva, Ksenia V., Vasquez-Gross, Hans A., Howell, Tyson, Bailey, Paul, Paraiso, Francine, Clissold, Leah, Simmonds, James, Ramirez-Gonzalez, Ricardo H., Wang, Xiaodong, Borrill, Philippa, Fosker,

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.54 MB

english, 2017

27

Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data

Daly, Gordon M., Leggett, Richard M., Rowe, William, Stubbs, Samuel, Wilkinson, Maxim, Ramirez-Gonzalez, Ricardo H., Caccamo, Mario, Bernal, William, Heeney, Jonathan L., Jordan, I. King

Journal:

Year:

2015

Language:

english

File:

PDF, 4.80 MB

english, 2015

28

Mutation Scanning in Wheat by Exon Capture and Next-Generation Sequencing

King, Robert, Bird, Nicholas, Ramirez-Gonzalez, Ricardo, Coghill, Jane A., Patil, Archana, Hassani-Pak, Keywan, Uauy, Cristobal, Phillips, Andrew L., Hernandez, Pilar

Journal:

Year:

2015

Language:

english

File:

PDF, 862 KB

english, 2015

29

NFC Evaluation in the Development of Mobile Applications for MICE in Tourism

Silva-Pedroza, David, Marin-Calero, Ricardo, Ramirez-Gonzalez, Gustavo

Journal:

Year:

2017

Language:

english

File:

PDF, 2.24 MB

english, 2017

30

Impact of transposable elements on genome structure and evolution in bread wheat

Wicker, Thomas, Gundlach, Heidrun, Spannagl, Manuel, Uauy, Cristobal, Borrill, Philippa, Ramírez-González, Ricardo H., De Oliveira, Romain, Mayer, Klaus F. X., Paux, Etienne, Choulet, Frédéric

Journal:

Year:

2018

Language:

english

File:

PDF, 4.67 MB

english, 2018

31

Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus

Martín, Azahara Carmen, Borrill, Philippa, Higgins, Janet, Alabdullah, Abdulkader, Ramírez-González, Ricardo H., Swarbreck, David, Uauy, Cristobal, Shaw, Peter, Moore, Graham

Journal:

Frontiers in Plant Science

Year:

2018

Language:

english

File:

PDF, 3.44 MB

english, 2018

32

The NLR-Annotator tool enables annotation of the intracellular immune receptor repertoire

Steuernagel, Burkhard, Witek, Kamil, Krattinger, Simon G., Ramirez-Gonzalez, Ricardo H., Schoonbeek, Henk-jan, Yu, Guotai, Baggs, Erin, Witek, Agnieszka, Yadav, Inderjit, Krasileva, Ksenia V, Jones, J

Journal:

PLANT PHYSIOLOGY

Year:

2020

File:

PDF, 10.72 MB

2020

33

A carbohydrate-binding protein, B-GRANULE CONTENT 1, influences starch granule size distribution in a dose-dependent manner in polyploid wheat

Chia, Tansy, Chirico, Marcella, King, Rob, Ramirez-Gonzalez, Ricardo, Saccomanno, Benedetta, Seung, David, Simmonds, James, Trick, Martin, Uauy, Cristobal, Verhoeven, Tamara, Trafford, Kay, Lunn, John

Journal:

Journal of Experimental Botany

Year:

2020

File:

PDF, 2.29 MB

2020