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51

[ACM Press the Conference - San Diego, California (2013.07.22-2013.07.25)] Proceedings of the Conference on Extreme Science and Engineering Discovery Environment Gateway to Discovery - XSEDE '13 - Optimizing the PCIT algorithm on stampede's Xeon and Xeon Phi processors for faster discovery of biological networks

Koesterke, L., Milfeld, K., Vaughn, M. W., Stanzione, D., Koltes, J. E., Weeks, N. T., Reecy, J. M.

Year:

2013

Language:

english

File:

PDF, 162 KB

english, 2013

52

Comparative analysis of GDF 8 (myostatin) in Bos indicus and Bos taurus

Tantia, Madhu S., Vijh, Ramesh K., Kumar, S.T. Bharani, Mishra, Bina, Reecy, James M.

Journal:

DNA Sequence - The Journal of Sequencing and Mapping

Year:

2006

Language:

english

File:

PDF, 102 KB

english, 2006

53

Polymorphisms in lipogenic genes and milk fatty acid composition in Holstein dairy cattle

Nafikov, Rafael A., Schoonmaker, Jon P., Korn, Kathleen T., Noack, Kristin, Garrick, Dorian J., Koehler, Kenneth J., Minick-Bormann, Jennifer, Reecy, James M., Spurlock, Diane E., Beitz, Donald C.

Journal:

Year:

2014

Language:

english

File:

PDF, 369 KB

english, 2014

54

Interleukin-8, Interleukin-1β, and Interferon-γ Levels Are Linked to PRRS Virus Clearance

Lunney, Joan K., Fritz, Eric R., Reecy, James M., Kuhar, Daniel, Prucnal, Elizabeth, Molina, Ramon, Christopher-Hennings, Jane, Zimmerman, Jeffrey, Rowland, Raymond R.R.

Journal:

Viral Immunology

Year:

2010

Language:

english

File:

PDF, 5.41 MB

english, 2010

55

RAPTR-SV: a hybrid method for the detection of structural variants

Bickhart, D. M., Hutchison, J. L., Xu, L., Schnabel, R. D., Taylor, J. F., Reecy, J. M., Schroeder, S., Van Tassell, C. P., Sonstegard, T. S., Liu, G. E.

Journal:

Year:

2015

Language:

english

File:

PDF, 496 KB

english, 2015

56

TACE release of TNF- mediates mechanotransduction-induced activation of p38 MAPK and myogenesis

Zhan, M., Jin, B., Chen, S.-E., Reecy, J. M., Li, Y.-P.

Journal:

Journal of Cell Science

Year:

2007

Language:

english

File:

PDF, 939 KB

english, 2007

57

Identification of genomic regions associated with feed efficiency in Nelore cattle

de Oliveira, Priscila, Cesar, Aline, do Nascimento, Michele L, Chaves, Amália S, Tizioto, Polyana C, Tullio, Rymer R, Lanna, Dante, Rosa, Antonio N, Sonstegard, Tad S, Mourao, Gerson B, Reecy, James M

Journal:

Year:

2014

Language:

english

File:

PDF, 297 KB

english, 2014

58

Expeditor: A Pipeline for Designing Primers Using Human Gene Structure and Livestock Animal EST Information

Hu, Z.-L., Glenn, K., Ramos, A. M., Otieno, C. J., Reecy, J. M., Rothschild, M. F.

Journal:

Journal of Heredity

Year:

2005

Language:

english

File:

PDF, 117 KB

english, 2005

59

Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples

Choi, Igseo, Bao, Hua, Kommadath, Arun, Hosseini, Afshin, Sun, Xu, Meng, Yan, Stothard, Paul, Plastow, Graham S, Tuggle, Christopher K, Reecy, James M, Fritz-Waters, Eric, Abrams, Samuel M, Lunney, Jo

Journal:

Year:

2014

Language:

english

File:

PDF, 1.35 MB

english, 2014

60

Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle

Tizioto, Polyana C, Taylor, Jeremy F, Decker, Jared E, Gromboni, Caio F, Mudadu, Mauricio A, Schnabel, Robert D, Coutinho, Luiz L, Mourão, Gerson B, Oliveira, Priscila, Souza, Marcela M, Reecy, James

Journal:

Genetics Selection Evolution

Year:

2015

Language:

english

File:

PDF, 714 KB

english, 2015

61

Sire breed effect on beef longissimus mineral concentrations and their relationships with carcass and palatability traits

Duan, Q., Tait, R.G., Schneider, M.J., Beitz, D.C., Wheeler, T.L., Shackelford, S.D., Cundiff, L.V., Reecy, J.M.

Journal:

Year:

2015

Language:

english

File:

PDF, 266 KB

english, 2015

62

Genome-wide association study of concentrations of iron and other minerals in longissimus muscle of Angus cattle

Mateescu, R. G., Garrick, D. J., Tait, R. G., Garmyn, A. J., Duan, Q., Liu, Q., Mayes, M. S., Van Eenennaam, A. L., VanOverbeke, D. L., Hilton, G. G., Beitz, D. C., Reecy, J. M.

Journal:

Journal of Animal Science

Year:

2013

Language:

english

File:

PDF, 875 KB

english, 2013

63

Associations between infectious bovine keratoconjunctivitis at weaning and ultrasongraphically measured body composition traits in yearling cattle

Funk, Lucas D., Reecy, James M., Wang, Chong, Tait, Richard G., O'Connor, Annette M.

Journal:

Journal of the American Veterinary Medical Association

Year:

2014

Language:

english

File:

PDF, 514 KB

english, 2014

64

Transcriptional profiling of PRKG2-null growth plate identifies putative down-stream targets of PRKG2

Koltes, James E, Kumar, Dinesh, Kataria, Ranjit S, Cooper, Vickie, Reecy, James M

Journal:

BMC Research Notes

Year:

2015

Language:

english

File:

PDF, 806 KB

english, 2015

65

Development and Application of Bovine and Porcine Oligonucleotide Arrays with Protein-Based Annotation

Garbe, John R., Elsik, Christine G., Antoniou, Eric, Reecy, James M., Clark, Karl J., Venkatraman, Anand, Kim, Jae-Woo, Schnabel, Robert D., Michael Dickens, C., Wolfinger, Russell D., Fahrenkrug, Sco

Journal:

Journal of Biomedicine and Biotechnology

Year:

2010

Language:

english

File:

PDF, 3.47 MB

english, 2010

66

Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era

Hu, Z.-L., Park, C. A., Wu, X.-L., Reecy, J. M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 8.60 MB

english, 2013

67

Estimation of relationships between mineral concentration and fatty acid composition of longissimus muscle and beef palatability traits

Garmyn, A. J., Hilton, G. G., Mateescu, R. G., Morgan, J. B., Reecy, J. M., Tait, R. G., Beitz, D. C., Duan, Q., Schoonmaker, J. P., Mayes, M. S., Drewnoski, M. E., Liu, Q., VanOverbeke, D. L.

Journal:

Journal of Animal Science

Year:

2011

Language:

english

File:

PDF, 1.05 MB

english, 2011

68

Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis

Nettleton, D., Recknor, J., Reecy, J. M.

Journal:

Year:

2008

Language:

english

File:

PDF, 172 KB

english, 2008

69

The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish

Lu, J., Peatman, E., Yang, Q., Wang, S., Hu, Z., Reecy, J., Kucuktas, H., Liu, Z.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 7.93 MB

english, 2011

70

Mapping genetic loci that interact with myostatin to affect growth traits

Cheng, Y, Rachagani, S, Dekkers, J C M, Mayes, M S, Tait, R, Reecy, J M

Journal:

Year:

2011

Language:

english

File:

PDF, 405 KB

english, 2011

71

Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection

Schroyen, Martine, Steibel, Juan P., Koltes, James E., Choi, Igseo, Raney, Nancy E., Eisley, Christopher, Fritz-Waters, Eric, Reecy, James M., Dekkers, Jack C. M., Rowland, Robert R. R., Lunney, Joan

Journal:

Year:

2015

Language:

english

File:

PDF, 3.00 MB

english, 2015

72

Multiple regions of the porcine α‐skeletal actin gene modulate muscle‐specific expression in cell culture and directly injected skeletal muscle

Reecy, J.M., Bidwell, C.A., Andrisani, O.M., Gerrard, D.E., Grant, A.L.

Journal:

Animal Biotechnology

Year:

1998

Language:

english

File:

PDF, 1.08 MB

english, 1998

73

AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond

Hu, Z.-L., Fritz, E. R., Reecy, J. M.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.94 MB

english, 2007

74

Developmental progress and current status of the Animal QTLdb

Hu, Zhi-Liang, Park, Carissa A., Reecy, James M.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.26 MB

english, 2016

75

[IEEE 2015 IEEE Trustcom/BigDataSE/ISPA - Helsinki, Finland (2015.8.20-2015.8.22)] 2015 IEEE Trustcom/BigDataSE/ISPA - Fast Epistasis Detection in Large-Scale GWAS for Intel Xeon Phi Clusters

Luecke, Glenn R., Weeks, Nathan T., Groth, Brandon M., Kraeva, Marina, Ma, Li, Kramer, Luke M., Koltes, James E., Reecy, James M.

Year:

2015

File:

PDF, 425 KB

2015

76

[IEEE 2015 IEEE Trustcom/BigDataSE/ISPA - Helsinki, Finland (2015.8.20-2015.8.22)] 2015 IEEE Trustcom/BigDataSE/ISPA - Fast Epistasis Detection in Large-Scale GWAS for Intel Xeon Phi Clusters

Luecke, Glenn R., Weeks, Nathan T., Groth, Brandon M., Kraeva, Marina, Ma, Li, Kramer, Luke M., Koltes, James E., Reecy, James M.

Year:

2015

Language:

english

File:

PDF, 425 KB

english, 2015

77

Lean and obese pig breeds exhibit differences in prenatal gene expression profiles of muscle development

Yang, X. R., Yu, B., Mao, X. B., Zheng, P., He, J., Yu, J., He, Y., Reecy, J. M., Chen, D. W.

Journal:

Year:

2015

Language:

english

File:

PDF, 571 KB

english, 2015

78

Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

Schroyen, Martine, Eisley, Christopher, Koltes, James E., Fritz-Waters, Eric, Choi, Igseo, Plastow, Graham S., Guan, Leluo, Stothard, Paul, Bao, Hua, Kommadath, Arun, Reecy, James M., Lunney, Joan K.,

Journal:

Year:

2016

Language:

english

File:

PDF, 2.65 MB

english, 2016

79

High-performance epistasis detection in quantitative trait GWAS

Weeks, N. T., Luecke, G. R., Groth, B. M., Kraeva, M., Ma, L., Kramer, L. M., Koltes, J. E., Reecy, J. M.

Journal:

International Journal of High Performance Computing Applications

Year:

2016

Language:

english

File:

PDF, 2.65 MB

english, 2016

80

GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes

Tuggle, Christopher K., Giuffra, Elisabetta, White, Stephen N., Clarke, Laura, Zhou, Huaijun, Ross, Pablo J., Acloque, Hervé, Reecy, James M., Archibald, Alan, Bellone, Rebecca R., Boichard, Michèle,

Journal:

Animal Genetics

Year:

2016

Language:

english

File:

PDF, 361 KB

english, 2016

81

Genome-wide methylation profile following prenatal and postnatal dietary omega-3 fatty acid supplementation in pigs

Boddicker, R. L., Koltes, J. E., Fritz-Waters, E. R., Koesterke, L., Weeks, N., Yin, T., Mani, V., Nettleton, D., Reecy, J. M., Baumgard, L. H., Spencer, J. D., Gabler, N. K., Ross, J. W.

Journal:

Animal Genetics

Year:

2016

Language:

english

File:

PDF, 483 KB

english, 2016

82

Genomic analysis of Ugandan and Rwandan chicken ecotypes using a 600 k genotyping array

Fleming, D. S., Koltes, J. E., Markey, A. D., Schmidt, C. J., Ashwell, C. M., Rothschild, M. F., Persia, M. E., Reecy, J. M., Lamont, S. J.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.42 MB

english, 2016

83

Large-scale gene co-expression network as a source of functional annotation for cattle genes

Beiki, Hamid, Nejati-Javaremi, Ardeshir, Pakdel, Abbas, Masoudi-Nejad, Ali, Hu, Zhi-Liang, Reecy, James M

Journal:

Year:

2016

Language:

english

File:

PDF, 2.27 MB

english, 2016

84

Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure

Fleming, Damarius S., Weigend, Steffen, Simianer, Henner, Weigend, Annett, Rothschild, Max, Schmidt, Carl, Ashwell, Christopher, Persia, Mike, Reecy, James, Lamont, Susan J.

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 12.35 MB

english, 2017

85

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection

Kommadath, Arun, Bao, Hua, Choi, Igseo, Reecy, James M., Koltes, James E., Fritz-Waters, Elyn, Eisley, Chris J., Grant, Jason R., Rowland, Robert R. R., Tuggle, Christopher K., Dekkers, Jack C. M., Lu

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

86

An evaluation of bovine respiratory disease complex in feedlot cattle: Impact on performance and carcass traits using treatment records and lung lesion scores

Schneider, M. J., Tait, R. G., Busby, W. D., Reecy, J. M.

Journal:

Journal of Animal Science

Year:

2009

Language:

english

File:

PDF, 596 KB

english, 2009

87

Evaluation of responses to vaccination of Angus cattle for four viruses that contribute to bovine respiratory disease complex

Kramer, L. M., Mayes, M. S., Fritz-Waters, E., Williams, J. L., Downey, E. D., Tait, R. G., Woolums, A., Chase, C., Reecy, J. M.

Journal:

Journal of Animal Science

Year:

2017

Language:

english

File:

PDF, 924 KB

english, 2017

88

0340 Differentially expressed miRNAs in skeletal muscle related to feed efficiency in Nellore cattle

Oliveira, P. S. N., Tizioto, P. C., Oliveira, G. B., Cesar, A. S. M., Diniz, W. J. S., Lima, A. O. D., Reecy, J. M., Coutinho, L. L., Regitano, L. C. A.

Journal:

Journal of Animal Science

Year:

2016

Language:

english

File:

PDF, 260 KB

english, 2016

89

Cattle infection response network and its functional modules

Beiki, Hamid, Pakdel, Abbas, Javaremi, Ardeshir Nejati, Masoudi-Nejad, Ali, Reecy, James M.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.99 MB

english, 2018

90

Gene expression profiling: Insights into skeletal muscle growth and development1

Reecy, J. M., Spurlock, D. Moody, Stahl, C. H.

Journal:

Journal of Animal Science

Year:

2006

Language:

english

File:

PDF, 57 KB

english, 2006

91

Putative Regulatory Factors Associated with Intramuscular Fat Content

Cesar, Aline S. M., Regitano, Luciana C. A., Koltes, James E., Fritz-Waters, Eric R., Lanna, Dante P. D., Gasparin, Gustavo, Mourão, Gerson B., Oliveira, Priscila S. N., Reecy, James M., Coutinho, Lui

Journal:

Year:

2015

Language:

english

File:

PDF, 2.29 MB

english, 2015

92

Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis)

Iamartino, Daniela, Nicolazzi, Ezequiel L., Van Tassell, Curtis P., Reecy, James M., Fritz-Waters, Eric R., Koltes, James E., Biffani, Stefano, Sonstegard, Tad S., Schroeder, Steven G., Ajmone-Marsan,

Journal:

Year:

2017

Language:

english

File:

PDF, 3.41 MB

english, 2017

93

Genetic parameters and genetic correlations among triacylglycerol and phospholipid fractions in Angus cattle1

Buchanan, J. W., Reecy, J. M., Garrick, D. J., Duan, Q., Beitz, D. C., Mateescu, R. G.

Journal:

Journal of Animal Science

Year:

2015

Language:

english

File:

PDF, 309 KB

english, 2015

94

A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens

Moreira, Gabriel Costa Monteiro, Boschiero, Clarissa, Cesar, Aline Silva Mello, Reecy, James M., Godoy, Thaís Fernanda, Trevisoli, Priscila Anchieta, Cantão, Maurício E., Ledur, Mônica Corrêa, Ibelli,

Journal:

Year:

2018

Language:

english

File:

PDF, 1.14 MB

english, 2018

95

Bayesian genome-wide association analysis of growth and yearling ultrasound measures of carcass traits in Brangus heifers1

Peters, S. O., Kizilkaya, K., Garrick, D. J., Fernando, R. L., Reecy, J. M., Weaber, R. L., Silver, G. A., Thomas, M. G.

Journal:

Journal of Animal Science

Year:

2012

Language:

english

File:

PDF, 884 KB

english, 2012

96

Identification of genome-wide SNP-SNP interactions associated with important traits in chicken

Zhang, Hui, Yu, Jia-Qiang, Yang, Li-Li, Kramer, Luke M., Zhang, Xin-Yang, Na, Wei, Reecy, James M., Li, Hui

Journal:

Year:

2017

Language:

english

File:

PDF, 1.68 MB

english, 2017

97

Use of Genome Sequence Information for Meat Quality Trait QTL Mining for Casual Genes and Mutations on Pig Chromosome 17

Hu, Zhi-Liang, Ramos, Antonio M., Humphray, Sean J., Rogers, Jane, Reecy, James M., Rothschild, Max F.

Journal:

Frontiers in Genetics

Year:

2011

Language:

english

File:

PDF, 915 KB

english, 2011

98

Deriving Gene Networks from SNP Associated with Triacylglycerol and Phospholipid Fatty Acid Fractions from Ribeyes of Angus Cattle

Buchanan, Justin W., Reecy, James M., Garrick, Dorian J., Duan, Qing, Beitz, Don C., Koltes, James E., Saatchi, Mahdi, Koesterke, Lars, Mateescu, Raluca G.

Journal:

Frontiers in Genetics

Year:

2016

Language:

english

File:

PDF, 759 KB

english, 2016

99

Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle

Mateescu, Raluca G., Garrick, Dorian J., Reecy, James M.

Journal:

Frontiers in Genetics

Year:

2017

Language:

english

File:

PDF, 2.83 MB

english, 2017

100

Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Oliveira, Gabriella B., Regitano, Luciana C. A., Cesar, Aline S. M., Reecy, James M., Degaki, Karina Y., Poleti, Mirele D., Felício, Andrezza M., Koltes, James E., Coutinho, Luiz L.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.61 MB

english, 2018