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1

Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

Marcotte, Richard, Sayad, Azin, Brown, Kevin R., Sanchez-Garcia, Felix, Reimand, Jüri, Haider, Maliha, Virtanen, Carl, Bradner, James E., Bader, Gary D., Mills, Gordon B., Pe’er, Dana, Moffat, Jason,

Journal:

Year:

2016

Language:

english

File:

PDF, 6.14 MB

english, 2016

2

Ranking Genes by Their Co-expression to Subsets of Pathway Members

Priit Adler, Hedi Peterson, Phaedra Agius, Jüri Reimand, Jaak Vilo

Journal:

Annals of the New York Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 271 KB

english, 2009

3

Domain-mediated protein interaction prediction: From genome to network

Jüri Reimand, Shirley Hui, Shobhit Jain, Brian Law, Gary D. Bader

Journal:

Year:

2012

Language:

english

File:

PDF, 946 KB

english, 2012

4

m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence

Jüri Reimand, Anu Aun, Jaak Vilo, Juan M Vaquerizas, Juhan Sedman, Nicholas M Luscombe

Journal:

Year:

2012

Language:

english

File:

PDF, 2.77 MB

english, 2012

5

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development

Nathalie Billon, Raivo Kolde, Jüri Reimand, Miguel C Monteiro…

Journal:

Year:

2010

Language:

english

File:

PDF, 2.89 MB

english, 2010

6

Comprehensive identification of mutational cancer driver genes across 12 tumor types

Tamborero, David, Gonzalez-Perez, Abel, Perez-Llamas, Christian, Deu-Pons, Jordi, Kandoth, Cyriac, Reimand, Jüri, Lawrence, Michael S., Getz, Gad, Bader, Gary D., Ding, Li, Lopez-Bigas, Nuria

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 1.48 MB

english, 2013

7

Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity

Meyer, Mona, Reimand, Jüri, Lan, Xiaoyang, Head, Renee, Zhu, Xueming, Kushida, Michelle, Bayani, Jane, Pressey, Jessica C., Lionel, Anath C., Clarke, Ian D., Cusimano, Michael, Squire, Jeremy A., Sche

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 3.80 MB

english, 2015

8

The mutational landscape of phosphorylation signaling in cancer

Reimand, Jüri, Wagih, Omar, Bader, Gary D.

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

9

MIMP: predicting the impact of mutations on kinase-substrate phosphorylation

Wagih, Omar, Reimand, Jüri, Bader, Gary D

Journal:

Year:

2015

Language:

english

File:

PDF, 664 KB

english, 2015

10

Molecular Classification of Ependymal Tumors across All CNS Compartments, Histopathological Grades, and Age Groups

Pajtler, Kristian W., Witt, Hendrik, Sill, Martin, Jones, David T.W., Hovestadt, Volker, Kratochwil, Fabian, Wani, Khalida, Tatevossian, Ruth, Punchihewa, Chandanamali, Johann, Pascal, Reimand, Jüri,

Journal:

Year:

2015

Language:

english

File:

PDF, 8.04 MB

english, 2015

11

Subgroup-specific structural variation across 1,000 medulloblastoma genomes

Northcott, Paul A., Shih, David J. H., Peacock, John, Garzia, Livia, Sorana Morrissy, A., Zichner, Thomas, Stütz, Adrian M., Korshunov, Andrey, Reimand, Jüri, Schumacher, Steven E., Beroukhim, Rameen,

Journal:

Year:

2012

Language:

english

File:

PDF, 924 KB

english, 2012

12

Evolutionary Constraint and Disease Associations of Post-Translational Modification Sites in Human Genomes

Reimand, Jüri, Wagih, Omar, Bader, Gary D., Cotsapas, Chris

Journal:

Year:

2015

Language:

english

File:

PDF, 3.11 MB

english, 2015

13

Pathway and network analysis of cancer genomes

Creixell, Pau, Reimand, Jüri, Haider, Syed, Wu, Guanming, Shibata, Tatsuhiro, Vazquez, Miguel, Mustonen, Ville, Gonzalez-Perez, Abel, Pearson, John, Sander, Chris, Raphael, Benjamin J, Marks, Debora S

Journal:

Year:

2015

Language:

english

File:

PDF, 520 KB

english, 2015

14

EAG2 potassium channel with evolutionarily conserved function as a brain tumor target

Huang, Xi, He, Ye, Dubuc, Adrian M, Hashizume, Rintaro, Zhang, Wei, Reimand, Jüri, Yang, Huanghe, Wang, Tongfei A, Stehbens, Samantha J, Younger, Susan, Barshow, Suzanne, Zhu, Sijun, Cooper, Michael K

Journal:

Nature Neuroscience

Year:

2015

Language:

english

File:

PDF, 9.31 MB

english, 2015

15

Research Resource: Interactome of Human Embryo Implantation: Identification of Gene Expression Pathways, Regulation, and Integrated Regulatory Networks

Altmäe, Signe, Reimand, Jüri, Hovatta, Outi, Zhang, Pu, Kere, Juha, Laisk, Triin, Saare, Merli, Peters, Maire, Vilo, Jaak, Stavreus-Evers, Anneli, Salumets, Andres

Journal:

Molecular Endocrinology

Year:

2012

Language:

english

File:

PDF, 1.51 MB

english, 2012

16

g:Profiler—a web server for functional interpretation of gene lists (2016 update)

Reimand, Jüri, Arak, Tambet, Adler, Priit, Kolberg, Liis, Reisberg, Sulev, Peterson, Hedi, Vilo, Jaak

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1003 KB

english, 2016

17

Impact of outdated gene annotations on pathway enrichment analysis

Wadi, Lina, Meyer, Mona, Weiser, Joel, Stein, Lincoln D, Reimand, Jüri

Journal:

Year:

2016

Language:

english

File:

PDF, 796 KB

english, 2016

18

Frequent mutations in acetylation and ubiquitination sites suggest novel driver mechanisms of cancer

Narayan, Soumil, Bader, Gary D., Reimand, Jüri

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

19

Erratum: ERRATUM: Comprehensive identification of mutational cancer driver genes across 12 tumor types

Tamborero, David, Gonzalez-Perez, Abel, Perez-Llamas, Christian, Deu-Pons, Jordi, Kandoth, Cyriac, Reimand, Jüri, Lawrence, Michael S., Getz, Gad, Bader, Gary D., Ding, Li, Lopez-Bigas, Nuria

Journal:

Scientific Reports

Year:

2013

File:

PDF, 137 KB

2013

20

Phosphoproteomics analysis identifies novel candidate substrates of the non-receptor tyrosine kinase, SRMS

Goel, Raghuveera Kumar, Paczkowska, Marta, Reimand, Juri, Napper, Scott, Lukong, Kiven Erique

Journal:

Molecular & Cellular Proteomics

Year:

2018

Language:

english

File:

PDF, 3.20 MB

english, 2018

21

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins

Krassowski, Michal, Paczkowska, Marta, Cullion, Kim, Huang, Tina, Dzneladze, Irakli, Ouellette, B F Francis, Yamada, Joseph T, Fradet-Turcotte, Amelie, Reimand, Jüri

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 2.82 MB

english, 2018

22

Global phosphoproteomic analysis identifies SRMS-regulated secondary signaling intermediates

Goel, Raghuveera Kumar, Meyer, Mona, Paczkowska, Marta, Reimand, Jüri, Vizeacoumar, Frederick, Vizeacoumar, Franco, Lam, TuKiet T., Lukong, Kiven Erique

Journal:

Proteome Science

Year:

2018

Language:

english

File:

PDF, 2.02 MB

english, 2018

23

MB-87INTEGRATED GENOMICS REVEALS NOVEL SUBTYPES OF MEDULLOBLASTOMA SUBGROUPS

Cavalli, Florence M.G., Remke, Marc, Reimand, Jüri, Rampasek, Ladislav, Goldenberg, Anna, Taylor, Michael, Ramaswamy, Vijay

Journal:

Year:

2016

Language:

english

File:

PDF, 27 KB

english, 2016

24

Thread 2: Network models

Reimand, Jüri, Bader, Gary, Margolin, Adam, Gonzalez-Perez, Abel, Tamborero, David, Lopez-Bigas, Nuria, Weinstein, John, Stuart, Joshua, Axton, Myles

Journal:

Nature Genetics

Year:

2013

File:

PDF, 34 KB

2013