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1

EClerize: A Customized Force-Directed Graph Drawing Algorithm for Biological Graphs with EC Attributes

Danaci, Hasan Fehmi, Cetin-Atalay, Rengul, Atalay, Volkan

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2018

Language:

english

File:

PDF, 2.31 MB

english, 2018

2

A monoclonal antibody against DNA binding helix of p53 protein

Yolcu, Esma, Sayan, Berna S, Yağci, Tamer, Cetin-Atalay, Rengul, Soussi, Thierry, Yurdusev, Nevzat, Ozturk, Mehmet

Journal:

Year:

2001

Language:

english

File:

PDF, 134 KB

english, 2001

3

[IEEE 2012 IEEE International Symposium on Circuits and Systems - ISCAS 2012 - Seoul, Korea (South) (2012.05.20-2012.05.23)] 2012 IEEE International Symposium on Circuits and Systems - Microscopic image classification via ℂWT-based covariance descriptors using Kullback-Leibler distance

Keskin, Furkan, Cetin, A. Enis, Ersahin, Tulin, Cetin-Atalay, Rengul

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

4

Application of the Ugi reaction with multiple amino acid-derived components: synthesis and conformational evaluation of piperazine-based minimalist peptidomimetics

Stucchi, Mattia, Cairati, Silvia, Cetin-Atalay, Rengul, Christodoulou, Michael S., Grazioso, Giovanni, Pescitelli, Gennaro, Silvani, Alessandra, Yildirim, Deniz Cansen, Lesma, Giordano

Journal:

Organic & Biomolecular Chemistry

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

5

The PI3K/AKT/mTOR interactive pathway

Ersahin, Tulin, Tuncbag, Nurcan, Cetin-Atalay, Rengul

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.65 MB

english, 2015

6

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

Rifaioglu, Ahmet Sureyya, Atas, Heval, Martin, Maria Jesus, Cetin-Atalay, Rengul, Atalay, Volkan, Doğan, Tunca

Journal:

Briefings in Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.22 MB

english, 2018

7

Bioactivity-guided isolation of cytotoxic secondary metabolites from the roots of Glycyrrhiza glabra and elucidation of their mechanisms of action

Çevik, Dicle, Burçin Yılmazgöz, Ş., Kan, Yüksel, Akhan Güzelcan, Ece, Durmaz, Irem, Çetin-Atalay, Rengül, Kırmızıbekmez, Hasan

Journal:

Industrial Crops and Products

Year:

2018

Language:

english

File:

PDF, 933 KB

english, 2018

8

A visual object tracking benchmark for cell motility in time-lapse imaging

Demir, H. Seckin, Cetin, A. Enis, Cetin Atalay, Rengul

Journal:

Signal, Image and Video Processing

Year:

2019

Language:

english

File:

PDF, 865 KB

english, 2019

9

The Design and Cytotoxic Evaluation of Some 1-Aryl-3-isopropylamino-1-propanone Hydrochlorides towards Human Huh-7 Hepatoma Cells

Ebru Mete, H. Inci Gul, Rengul Cetin-Atalay, Umashankar Das, Ertan Sahin, Mustafa Gul, Cavit Kazaz, Jonathan R. Dimmock

Journal:

Archiv der Pharmazie

Year:

2011

Language:

english

File:

PDF, 187 KB

english, 2011

10

ChemInform Abstract: Design and Cytotoxic Evaluation of Some 1-Aryl-3-isopropylamino-1-propanone Hydrochlorides Towards Human Huh-7 Hepatoma Cells.

Ebru Mete, H. Inci Gul, Rengul Cetin-Atalay, Umashankar Das, Ertan Sahin, Mustafa Gul, Cavit Kazaz, Jonathan R. Dimmock

Journal:

Year:

2011

File:

PDF, 25 KB

2011

11

Subsequence-based feature map for protein function classification

Omer Sinan Sarac, Özge Gürsoy-Yüzügüllü, Rengul Cetin-Atalay, Volkan Atalay

Journal:

Computational Biology and Chemistry

Year:

2008

Language:

english

File:

PDF, 303 KB

english, 2008

12

Inhibition of Akt signaling in hepatoma cells induces apoptotic cell death independent of Akt activation status

Francesca Buontempo, Tulin Ersahin, Silvia Missiroli, Serif Senturk, Daniela Etro, Mehmet Ozturk, Silvano Capitani, Rengul Cetin-Atalay, Maria Luca Neri

Journal:

Investigational New Drugs

Year:

2011

Language:

english

File:

PDF, 621 KB

english, 2011

13

Molecular Characterization of a Full Genome Turkish Hepatitis C Virus 1b Isolate (HCV-TR1): A Predominant Viral Form in Turkey

Esra Yildiz, Asli Oztan, Funda Sar, Ergun Pinarbasi, Rengul Cetin-Atalay, Hikmet Akkiz, Mehmet Ozturk

Journal:

Year:

2002

Language:

english

File:

PDF, 109 KB

english, 2002

14

Synthesis of Novel 6-(4-Substituted piperazine-1-yl)-9-(β-d-ribofuranosyl)purine Derivatives, Which Lead to Senescence-Induced Cell Death in Liver Cancer Cells

Tuncbilek, Meral, Bilget Guven, Ebru, Onder, Tugce, Cetin Atalay, Rengul

Journal:

Journal of Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 2.68 MB

english, 2012

15

A novel form of recessive limb girdle muscular dystrophy with mental retardation and abnormal expression of α-dystroglycan

Pervin Dinçer, Burcu Balcı, Yeliz Yuva, Beril Talim, Martin Brockington, Deniz Dinçel, Silvia Torelli, Sue Brown, Gülsev Kale, Göknur Haliloǧlu, Filiz Özbas Gerçeker, Rengül Çetin Atalay, Cengiz Yakıc

Journal:

Neuromuscular Disorders

Year:

2003

Language:

english

File:

PDF, 363 KB

english, 2003

16

A novel thiazolidine compound induces caspase-9 dependent apoptosis in cancer cells

F. Esra Onen-Bayram, Irem Durmaz, Daniel Scherman, Jean Herscovici, Rengul Cetin-Atalay

Journal:

Bioorganic & Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

17

Synthesis, anticancer activities and molecular modeling studies of novel indole retinoid derivatives

Gurkan-Alp, A. Selen, Mumcuoglu, Mine, Andac, Cenk A., Dayanc, Emre, Cetin-Atalay, Rengul, Buyukbingol, Erdem

Journal:

European Journal of Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 699 KB

english, 2012

18

Synthesis of new N,N′-bis[1-aryl-3-(piperidine-1-yl)propylidene]hydrazine dihydrochlorides and evaluation of their cytotoxicity against human hepatoma and breast cancer cells

Kucukoglu, Kaan, Gul, H. Inci, Cetin-Atalay, Rengul, Baratli, Yosra, Charles, Anne-Laure, Sukuroglu, Murat, Gul, Mustafa, Geny, Bernard

Journal:

Journal of Enzyme Inhibition and Medicinal Chemistry

Year:

2014

Language:

english

File:

PDF, 295 KB

english, 2014

19

A signal transduction score flow algorithm for cyclic cellular pathway analysis, which combines transcriptome and ChIP-seq data

Isik, Zerrin, Ersahin, Tulin, Atalay, Volkan, Aykanat, Cevdet, Cetin-Atalay, Rengul

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.07 MB

english, 2012

20

[IEEE 2008 IEEE 16th Signal Processing, Communication and Applications Conference (SIU) - Aydin, Turkey (2008.04.20-2008.04.22)] 2008 IEEE 16th Signal Processing, Communication and Applications Conference - Short time series microarray data analysis and biological annotation

Sokmen, Zerrin, Atalay, Volkan, Atalay, Rengul Cetin

Year:

2008

Language:

turkish

File:

PDF, 611 KB

turkish, 2008

21

[IEEE 2011 IEEE 19th Signal Processing and Communications Applications Conference (SIU) - Antalya, Turkey (2011.04.20-2011.04.22)] 2011 IEEE 19th Signal Processing and Communications Applications Conference (SIU) - Unsupervised segmentation of live cell images using Gaussian modeling

Arslan, Salim, Durmaz, Irem, Cetin-Atalay, Rengul, Gunduz-Demir, Cigdem

Year:

2011

Language:

turkish

File:

PDF, 9.14 MB

turkish, 2011

22

3-Propionyl-thiazolidine-4-carboxylic acid ethyl esters: a family of antiproliferative thiazolidines

Önen-Bayram, F. Esra, Buran, Kerem, Durmaz, Irem, Berk, Barkin, Cetin-Atalay, Rengul

Journal:

Year:

2015

Language:

english

File:

PDF, 310 KB

english, 2015

23

Cytotoxic activities of some benzothiazole-piperazine derivatives

Gurdal, Enise Ece, Durmaz, Irem, Cetin-Atalay, Rengul, Yarim, Mine

Journal:

Journal of Enzyme Inhibition and Medicinal Chemistry

Year:

2014

Language:

english

File:

PDF, 314 KB

english, 2014

24

Near-IR Absorbing BODIPY Derivatives as Glutathione-Activated Photosensitizers for Selective Photodynamic Action

Turan, Ilke Simsek, Cakmak, Fatma Pir, Yildirim, Deniz Cansen, Cetin-Atalay, Rengul, Akkaya, Engin U.

Journal:

Chemistry - A European Journal

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

25

[IEEE 2012 46th Annual Conference on Information Sciences and Systems (CISS) - Princeton, NJ, USA (2012.03.21-2012.03.23)] 2012 46th Annual Conference on Information Sciences and Systems (CISS) - Carcinoma cell line discrimination in microscopic images using unbalanced wavelets

Keskin, Furkan, Suhre, Alexander, Ersahin, Tulin, Cetin-Atalay, Rengul, Cetin, A. Enis

Year:

2012

Language:

english

File:

PDF, 1.10 MB

english, 2012

26

pH-responsive near-infrared emitting conjugated polymer nanoparticles for cellular imaging and controlled-drug delivery

Pennakalathil, Jousheed, Özgün, Alp, Durmaz, Irem, Cetin-Atalay, Rengül, Tuncel, Dönüs

Journal:

Journal of Polymer Science Part A: Polymer Chemistry

Year:

2015

Language:

english

File:

PDF, 816 KB

english, 2015

27

Nuclear Exclusion of p33ING1b Tumor Suppressor Protein: Explored in HCC Cells Using a New Highly Specific Antibody

Sayan, Berna, Emre, Neset Cevdet Tolga, Irmak, Meliha Burcu, Ozturk, Mehmet, Cetin-Atalay, Rengul

Journal:

Year:

2009

Language:

english

File:

PDF, 10.53 MB

english, 2009

28

[IEEE ICASSP 2013 - 2013 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) - Vancouver, BC, Canada (2013.05.26-2013.05.31)] 2013 IEEE International Conference on Acoustics, Speech and Signal Processing - A multiplication-free framework for signal processing and applications in biomedical image analysis

Suhre, Alexander, Keskin, Furkan, Ersahin, Tulin, Cetin-Atalay, Rengul, Ansari, Rashid, Cetin, A. Enis

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

29

Synthesis and cytotoxicity studies of novel benzhydrylpiperazine carboxamide and thioamide derivatives

Gurdal, Enise Ece, Durmaz, Irem, Cetin-Atalay, Rengul, Yarim, Mine

Journal:

Journal of Enzyme Inhibition and Medicinal Chemistry

Year:

2014

Language:

english

File:

PDF, 288 KB

english, 2014

30

[IEEE 2014 22nd Signal Processing and Communications Applications Conference (SIU) - Trabzon, Turkey (2014.4.23-2014.4.25)] 2014 22nd Signal Processing and Communications Applications Conference (SIU) - A supervised learning model for live cell segmentation

Koyuncu, Can Fahrettin, Durmaz, Irem, Cetin-Atalay, Rengul, Gunduz-Demir, Cigdem

Year:

2014

Language:

turkish

File:

PDF, 495 KB

turkish, 2014

31

Anti-cancer and anti-hepatitis C virus NS5B polymerase activity of etodolac 1,2,4-triazoles*

Çıkla-Süzgün, Pelin, Kaushik-Basu, Neerja, Basu, Amartya, Arora, Payal, Talele, Tanaji T., Durmaz, Irem, Çetin-Atalay, Rengül, Küçükgüzel, Ş.Güniz

Journal:

Journal of Enzyme Inhibition and Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 577 KB

english, 2015

32

Special issue on microscopic image processing

Kose, Kivanc, Cetin-Atalay, Rengul, Cetin, A. Enis

Journal:

Signal, Image and Video Processing

Year:

2014

Language:

english

File:

PDF, 69 KB

english, 2014

33

PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function

Keskin, Nazli, Deniz, Emre, Eryilmaz, Jitka, Un, Manolya, Batur, Tugce, Ersahin, Tulin, Cetin Atalay, Rengul, Sakaguchi, Shinya, Ellmeier, Wilfried, Erman, Batu

Journal:

Molecular and Cellular Biology

Year:

2015

Language:

english

File:

PDF, 2.29 MB

english, 2015

34

Synthesis of 3-aroyl-4-aryl-1-isopropylamino-4-piperidinols and evaluation of the cytotoxicities of the compounds against human hepatoma and breast cancer cell lines

Kucukoglu, Kaan, Mete, Ebru, Cetin-Atalay, Rengul, Gul, Halise Inci

Journal:

Journal of Enzyme Inhibition and Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 209 KB

english, 2015

35

Ynamide Click chemistry in development of triazole VEGFR2 TK modulators

Vojtičková, Margaréta, Dobiaš, Juraj, Hanquet, Gilles, Addová, Gabriela, Cetin-Atalay, Rengul, Yildirim, Deniz Cansen, Boháč, Andrej

Journal:

European Journal of Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 4.37 MB

english, 2015

36

[IEEE 2015 23th Signal Processing and Communications Applications Conference (SIU) - Malatya, Turkey (2015.5.16-2015.5.19)] 2015 23nd Signal Processing and Communications Applications Conference (SIU) - Wavelet merged multi-resolution super-pixels and their applications on fluorescent MSC images

Yorulmaz, Onur, Oguz, Oguzhan, Akhan, Ece, Tuncel, Donus, Atalay, Rengul C., Cetin, A. Enis

Year:

2015

Language:

turkish

File:

PDF, 991 KB

turkish, 2015

37

Phase and TV Based Convex Sets for Blind Deconvolution of Microscopic Images

Tofighi, Mohammad, Yorulmaz, Onur, Kose, Kivanc, Yildirim, Deniz Cansen, Cetin Atalay, Rengul, Cetin, A. Enis

Journal:

IEEE Journal of Selected Topics in Signal Processing

Year:

2015

Language:

english

File:

PDF, 37.73 MB

english, 2015

38

[IEEE 2015 23th Signal Processing and Communications Applications Conference (SIU) - Malatya, Turkey (2015.5.16-2015.5.19)] 2015 23nd Signal Processing and Communications Applications Conference (SIU) - Multiplication-free Neural Networks

Akbas, Cem Emre, Bozkurt, Alican, Cetin, A. Enis, Cetin-Atalay, Rengul, Uner, Aysegul

Year:

2015

Language:

turkish

File:

PDF, 280 KB

turkish, 2015

39

Liver cancer cells are sensitive to Lanatoside C induced cell death independent of their PTEN status

Durmaz, Irem, Guven, Ebru Bilget, Ersahin, Tulin, Ozturk, Mehmet, Calis, Ihsan, Cetin-Atalay, Rengul

Journal:

Year:

2015

Language:

english

File:

PDF, 2.84 MB

english, 2015

40

Novel triazolothiadiazines act as potent anticancer agents in liver cancer cells through Akt and ASK-1 proteins

Aytaç, Peri S., Durmaz, Irem, Houston, Douglas R., Cetin-Atalay, Rengul, Tozkoparan, Birsen

Journal:

Bioorganic & Medicinal Chemistry

Year:

2016

Language:

english

File:

PDF, 1.63 MB

english, 2016

41

[IEEE 2015 International Workshop on Computational Intelligence for Multimedia Understanding (IWCIM) - Prague, Czech Republic (2015.10.29-2015.10.30)] 2015 International Workshop on Computational Intelligence for Multimedia Understanding (IWCIM) - Detection of Cancer Stem Cells in microscopic images by using region covariance and codifference method

Oguz, Oguzhan, Muenzenmayer, Christian, Wittenberg, Thomas, Uner, Aysegul, Cetin, A. Enis, Atalay, Rengul Cetin

Year:

2015

Language:

english

File:

PDF, 297 KB

english, 2015

42

[IEEE 2015 IEEE International Conference on Image Processing (ICIP) - Quebec City, QC, Canada (2015.9.27-2015.9.30)] 2015 IEEE International Conference on Image Processing (ICIP) - Multi-resolution super-pixels and their applications on fluorescent mesenchymal stem cells images using 1-D SIFT merging

Yorulmaz, Onur, Oguz, Oguzhan, Akhan, Ece, Tuncel, Donus, Atalay, Rengul C., Cetin, A. Enis

Year:

2015

Language:

english

File:

PDF, 1.42 MB

english, 2015

43

SPIE Proceedings [SPIE SPIE Medical Imaging - San Diego, California, United States (Saturday 27 February 2016)] Medical Imaging 2016: Digital Pathology - Classification of human carcinoma cells using multispectral imagery

Gurcan, Metin N., Madabhushi, Anant, Çinar, Umut, Y. Çetin, Yasemin, Çetin-Atalay, Rengul, Çetin, Enis

Year:

2016

Language:

english

File:

PDF, 801 KB

english, 2016

44

Iterative h-minima-based marker-controlled watershed for cell nucleus segmentation

Koyuncu, Can Fahrettin, Akhan, Ece, Ersahin, Tulin, Cetin-Atalay, Rengul, Gunduz-Demir, Cigdem

Journal:

Cytometry Part A

Year:

2016

Language:

english

File:

PDF, 1.40 MB

english, 2016

45

Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering

Carkacioglu, Levent, Atalay, Rengul Cetin, Konu, Ozlen, Atalay, Volkan, Can, Tolga

Journal:

International Journal of Data Mining and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.13 MB

english, 2010

46

Quinoides and VEGFR2 TKIs influence the fate of hepatocellular carcinoma and its cancer stem cells

Kahraman, Deniz Cansen, Hanquet, Gilles, Jeanmart, Loïc, Lanners, Steve, Šramel, Peter, Boháč, Andrej, Cetin-Atalay, Rengul

Journal:

Year:

2016

Language:

english

File:

PDF, 2.78 MB

english, 2016

47

The AKT inhibitor MK-2206 is cytotoxic in hepatocarcinoma cells displaying hyperphosphorylated AKT-1 and synergizes with conventional chemotherapy.

Simioni, Carolina, Martelli, Alberto M, Cani, Alice, Cetin-Atalay, Rengul, McCubrey, James a, Capitani, Silvano, Neri, Luca M

Journal:

Year:

2013

Language:

english

File:

PDF, 1.72 MB

english, 2013

48

Synthesis and biological evaluation of novel pyrazolic chalcone derivatives as novel hepatocellular carcinoma therapeutics

Hawash, Mohammed M.A., Kahraman, Deniz Cansen, Eren, Fikriye, Cetin Atalay, Rengul, Baytas, Sultan Nacak

Journal:

European Journal of Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 5.86 MB

english, 2017

49

SPIE Proceedings [SPIE SPIE Medical Imaging - Orlando, Florida, United States (Saturday 11 February 2017)] Medical Imaging 2017: Digital Pathology - Automated cancer stem cell recognition in H and E stained tissue using convolutional neural networks and color deconvolution

Gurcan, Metin N., Tomaszewski, John E., Aichinger, Wolfgang, Krappe, Sebastian, Cetin, A. Enis, Cetin-Atalay, Rengul, Üner, Aysegül, Benz, Michaela, Wittenberg, Thomas, Stamminger, Marc, Münzenmayer,

Year:

2017

Language:

english

File:

PDF, 471 KB

english, 2017

50

SPIE Proceedings [SPIE SPIE Commercial + Scientific Sensing and Imaging - Anaheim, California, United States (Sunday 9 April 2017)] Compressive Sensing VI: From Diverse Modalities to Big Data Analytics - Multiplication free neural network for cancer stem cell detection in H-and-E stained liver images

Ahmad, Fauzia, Badawi, Diaa, Akhan, Ece, Mallah, Ma'en, Üner, Ayşegül, Çetin-Atalay, Rengül, Çetin, A. Enis

Year:

2017

Language:

english

File:

PDF, 439 KB

english, 2017

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