Ressom: search on Z-Library

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1

LC-MS-based metabolomics

Zhou, Bin, Xiao, Jun Feng, Tuli, Leepika, Ressom, Habtom W.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.86 MB

english, 2012

2

Metabolite identification and quantitation in LC-MS/MS-based metabolomics

Jun Feng Xiao, Bin Zhou, Habtom W. Ressom

Journal:

TrAC Trends in Analytical Chemistry

Year:

2012

Language:

english

File:

PDF, 641 KB

english, 2012

3

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data

Yuji Zhang, Jianhua Xuan, Benildo G de los Reyes, Robert Clarke, Habtom W Ressom

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.05 MB

english, 2008

4

MOTA: Network-Based Multi-Omic Data Integration for Biomarker Discovery

Fan, Ziling, Zhou, Yuan, Ressom, Habtom W.

Journal:

Year:

2020

File:

PDF, 1.08 MB

2020

5

Adaptive double self-organizing maps for clustering gene expression profiles

H. Ressom, D. Wang, P. Natarajan

Journal:

Neural Networks

Year:

2003

Language:

english

File:

PDF, 297 KB

english, 2003

6

Gamma-tocotrienol induced apoptosis is associated with unfolded protein response in human breast cancer cells

Dorrelyn Patacsil, Anh Thu Tran, Youn Sook Cho, Simeng Suy, Francisco Saenz, Irina Malyukova, Habtom Ressom, Sean P. Collins, Robert Clarke, Deepak Kumar

Journal:

The Journal of Nutritional Biochemistry

Year:

2012

Language:

english

File:

PDF, 876 KB

english, 2012

7

Increasing the efficiency of fuzzy logic-based gene expression data analysis

Ressom, Habtom, Reynolds, Robert, Varghese, Rency S.

Journal:

Physiological Genomics

Year:

2003

Language:

english

File:

PDF, 1.45 MB

english, 2003

8

Learning Premises of Fuzzy Rules for Knowledge Acquisition in Classification Problems

N. Xiong, L. Litz, H. Ressom

Journal:

Knowledge and Information Systems

Year:

2002

Language:

english

File:

PDF, 129 KB

english, 2002

9

Probabilistic Mixture Regression Models for Alignment of LC-MS Data

Befekadu, G. K., Tadesse, M. G., Tsai, T., Ressom, H. W.

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.36 MB

english, 2011

10

[IEEE 12th International Fuzzy Systems Conference - St Louis, MO, USA (25-28 May 2003)] The 12th IEEE International Conference on Fuzzy Systems, 2003. FUZZ '03. - Fuzzy logic-based gene regulatory network

Ressom, H., Wang, D., Varghese, R.S., Reynolds, R.

Year:

2003

Language:

english

File:

PDF, 529 KB

english, 2003

11

Sample Type Bias in the Analysis of Cancer Genomes

Solomon, D. A., Kim, J.-S., Ressom, H. W., Sibenaller, Z., Ryken, T., Jean, W., Bigner, D., Yan, H., Waldman, T.

Journal:

Cancer Research

Year:

2009

Language:

english

File:

PDF, 228 KB

english, 2009

12

Candidate markers for the detection of hepatocellular carcinoma in low-molecular weight fraction of serum

Goldman, R., Ressom, H. W., Abdel-Hamid, M., Goldman, L., Wang, A., Varghese, R. S., An, Y., Loffredo, C. A., Drake, S. K., Eissa, S. A., Gouda, I., Ezzat, S., Moiseiwitsch, F. S.

Journal:

Year:

2007

Language:

english

File:

PDF, 291 KB

english, 2007

13

Mutational Inactivation of PTPRD in Glioblastoma Multiforme and Malignant Melanoma

Solomon, D. A., Kim, J.-S., Cronin, J. C., Sibenaller, Z., Ryken, T., Rosenberg, S. A., Ressom, H., Jean, W., Bigner, D., Yan, H., Samuels, Y., Waldman, T.

Journal:

Cancer Research

Year:

2008

Language:

english

File:

PDF, 619 KB

english, 2008

14

Analysis of mass spectral serum profiles for biomarker selection

Ressom, H. W., Varghese, R. S., Abdel-Hamid, M., Eissa, S. A.-L., Saha, D., Goldman, L., Petricoin, E. F., Conrads, T. P., Veenstra, T. D., Loffredo, C. A., Goldman, R.

Journal:

Year:

2005

Language:

english

File:

PDF, 439 KB

english, 2005

15

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (5 – 9 January 2009)] Biocomputing 2009 - KNOWLEDGE-DRIVEN ANALYSIS AND DATA INTEGRATION FOR HIGH-THROUGHPUT BIOLOGICAL DATA – SESSION INTRODUCTION

OCHS, M. F., QUACKENBUSH, J., DAVULURI, R., RESSOM, H.

Language:

english

File:

PDF, 492 KB

english

16

[IEEE 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shenzhen, China (2016.12.15-2016.12.18)] 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Metabolomic data deconvolution using probabilistic purification models

Wang, Minkun, Di Poto, Cristina, Ferrarini, Alessia, Yu, Guoqiang, Ressom, Habtom W.

Year:

2016

Language:

english

File:

PDF, 1.62 MB

english, 2016

17

[IEEE 2020 42nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) in conjunction with the 43rd Annual Conference of the Canadian Medical and Biological Engineering Society - Montreal, QC, Canada (2020.7.20-2020.7.24)] 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) - Epigenetic changes associated with mechanisms of disparities in hepatocellular carcinoma

Varghese, Rency S., Zhou, Yuan, Chen, Yifan, Barefoot, Megan E., Tadesse, Mahlet, Ressom, Habtom W.

Year:

2020

File:

PDF, 658 KB

2020

18

[IEEE 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Vancouver, BC (2008.08.20-2008.08.25)] 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Multi-class alignment of LC-MS data using probabilistic-based mixture regression models

Befekadu, Getachew K., Tadesse, Mahlet G., Hathout, Yetrib, Ressom, Habtom W.

Year:

2008

Language:

english

File:

PDF, 298 KB

english, 2008

19

[IEEE IEEE International Conference on Systems, Man, and Cybernetics - Nashville, TN, USA (8-11 Oct. 2000)] SMC 2000 Conference Proceedings. 2000 IEEE International Conference on Systems, Man and Cybernetics. 'Cybernetics Evolving to Systems, Humans, Organizations, and their Complex Interactions' (Cat. No.00CH37166) - On-line estimation of key quality parameters in nonwoven production

Ressom, H., Voos, H., Litz, L., Schmitt, P.

Year:

2000

Language:

english

File:

PDF, 558 KB

english, 2000

20

Maternal Early Pregnancy Serum Metabolites and Risk of Gestational Diabetes Mellitus

Enquobahrie, Daniel A., Denis, Marie, Tadesse, Mahlet G., Gelaye, Bizu, Ressom, Habtom W., Williams, Michelle A.

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2015

Language:

english

File:

PDF, 786 KB

english, 2015

21

DNA Methylation Activates TP73 Expression in Hepatocellular Carcinoma and Gastrointestinal Cancer

Yao, Zhixing, Di Poto, Cristina, Mavodza, Grace, Oliver, Everett, Ressom, Habtom W., Sherif, Zaki A.

Journal:

Scientific Reports

Year:

2019

File:

PDF, 2.27 MB

2019

22

Type 3 innate lymphoid cells are associated with a successful intestinal transplant

Kang, Jiman, Loh, Katrina, Belyayev, Leonid, Cha, Priscilla, Sadat, Mohammed, Khan, Khalid, Gusev, Yuriy, Bhuvaneshwar, Krithika, Ressom, Habtom, Moturi, Sangeetha, Kaiser, Jason, Hawksworth, Jason, R

Journal:

American Journal of Transplantation

Year:

2020

File:

PDF, 20.19 MB

2020

23

Inversion of ocean color observations using particle swarm optimization

Slade, W.H., Ressom, H.W., Musavi, M.T., Miller, R.L.

Journal:

IEEE Transactions on Geoscience and Remote Sensing

Year:

2004

Language:

english

File:

PDF, 942 KB

english, 2004

24

Prioritization of putative metabolite identifications in LC-MS/MS experiments using a computational pipeline

Zhou, Bin, Xiao, Jun Feng, Ressom, Habtom W.

Journal:

Year:

2013

Language:

english

File:

PDF, 828 KB

english, 2013

25

[IEEE 2010 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010) - Buenos Aires (2010.08.31-2010.09.4)] 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology - SVM-based spectral matching for metabolite identification

Bin Zhou,, Cheema, A K, Ressom, H W

Year:

2010

Language:

english

File:

PDF, 543 KB

english, 2010

26

INDEED: Integrated differential expression and differential network analysis of omic data for biomarker discovery

Zuo, Yiming, Cui, Yi, Di Poto, Cristina, Varghese, Rency S., Yu, Guoqiang, Li, Ruijiang, Ressom, Habtom W.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.81 MB

english, 2016

27

[IEEE 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shenzhen, China (2016.12.15-2016.12.18)] 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Network-based analysis of reverse phase protein array data

Varghese, Rency S, Zuo, Yiming, Zhao, Yi, Zhang, Yong-Wei, Jablonski, Sandra A, Pierobon, Mariaelena, Petricoin, Emanuel F, Ressom, Habtom W, Weiner, Louis M

Year:

2016

Language:

english

File:

PDF, 939 KB

english, 2016

28

Menthol Smokers: Metabolomic Profiling and Smoking Behavior

Hsu, Ping-Ching, Lan, Renny S., Brasky, Theodore M., Marian, Catalin, Cheema, Amrita K., Ressom, Habtom W., Loffredo, Christopher A., Pickworth, Wallace B., Shields, Peter G.

Journal:

Cancer Epidemiology Biomarkers & Prevention

Year:

2017

Language:

english

File:

PDF, 741 KB

english, 2017

29

Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards

Tsai, T.-H., Tadesse, M. G., Di Poto, C., Pannell, L. K., Mechref, Y., Wang, Y., Ressom, H. W.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.43 MB

english, 2013

30

Integrated Analysis of ATM Mediated Gene and Protein Expression Impacting Cellular Metabolism

Cheema, Amrita K., Timofeeva, Olga, Varghese, Rency, Dimtchev, Alexandre, Shiekh, Kathryn, Shulaev, Vladimir, Suy, Simeng, Collins, Sean, Ressom, Habtom, Jung, Mira, Dritschilo, Anatoly

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 3.53 MB

english, 2011

31

Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO

Zuo, Yiming, Cui, Yi, Yu, Guoqiang, Li, Ruijiang, Ressom, Habtom W.

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 2.64 MB

english, 2017

32

[IEEE 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - San Diego, CA, USA (2019.11.18-2019.11.21)] 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Integrative Analysis of DNA Methylation and Gene Expression Patterns in Tissues from Hepatocellular Carcinoma Patients

Barefoot, Megan E., Chen, Yifan, Varghese, Rency S., Zhou, Yuan, Ressom, Habtom W.

Year:

2019

Language:

english

File:

PDF, 875 KB

english, 2019

33

iTRAQ-Based Quantitative Protein Expression Profiling and MRM Verification of Markers in Type 2 Diabetes

Kaur, Prabhjit, Rizk, Nasser M., Ibrahim, Sereen, Younes, Noura, Uppal, Arushi, Dennis, Kevin, Karve, Tejaswita, Blakeslee, Kenneth, Kwagyan, John, Zirie, Mahmoud, Ressom, Habtom W., Cheema, Amrita K.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.71 MB

english, 2012

34

Peak selection from MALDI-TOF mass spectra using ant colony optimization

Ressom, H. W., Varghese, R. S., Drake, S. K., Hortin, G. L., Abdel-Hamid, M., Loffredo, C. A., Goldman, R.

Journal:

Year:

2007

Language:

english

File:

PDF, 578 KB

english, 2007

35

[IEEE 2007 IEEE/NIH Life Science Systems and Applications Workshop - Bethesda, MD, USA (2007.11.8-2007.11.9)] 2007 IEEE/NIH Life Science Systems and Applications Workshop - Integrating multi-source biological data for transcriptional regulatory module discovery

Ressom, Habtom W., Yuji Zhang,, Jianhua Xuan,, Yue Wang,, Clarke, Robert

Year:

2007

Language:

english

File:

PDF, 1.53 MB

english, 2007

36

Bayesian Normalization Model for Label-free Quantitative Analysis by LC-MS

Nezami Ranjbar, Mohammad R., Tadesse, Mahlet G., Wang, Yue, Ressom, Habtom W.

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.80 MB

english, 2014

37

[IEEE 2004 IEEE International Joint Conference on Neural Networks - Budapest, Hungary (25-29 July 2004)] 2004 IEEE International Joint Conference on Neural Networks (IEEE Cat. No.04CH37541) - Neural network based light attenuation model for monitoring seagrass health

Ressom, H., Natarajan, P., Srirangam, S., Musavi, M.T., Virnstein, R.W., Morris, L.J., Tweedale, W.

Year:

2004

Language:

english

File:

PDF, 320 KB

english, 2004

38

[IEEE 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Orlando, FL, USA (2016.8.16-2016.8.20)] 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Multi-omic approaches for characterization of hepatocellular carcinoma

Ressom, Habtom W., Di Poto, Cristina, Ferrarini, Alessia, Hu, Yunli, Ranjbar, Mohammad R. Nezami, Song, Ehwang, Varghese, Rency S., Wang, Minkun, Zhou, Shiyue, Zhu, Rui, Zuo, Yiming, Tadesse, Mahlet G

Year:

2016

Language:

english

File:

PDF, 857 KB

english, 2016

39

Pathway and Network Approaches for Identification of Cancer Signature Markers from Omics Data

Wang, Jinlian, Zuo, Yiming, Man, Yan-gao, Avital, Itzhak, Stojadinovic, Alexander, Liu, Meng, Yang, Xiaowei, Varghese, Rency S., Tadesse, Mahlet G, Ressom, Habtom W

Journal:

Journal of Cancer

Year:

2015

Language:

english

File:

PDF, 681 KB

english, 2015

40

Metabolomic profiling for biomarker discovery in pancreatic cancer

Prabhjit Kaur, Kathryn Sheikh, Alexander Kirilyuk, Ksenia Kirilyuk, Rajbir Singh, Habtom W. Ressom, Amrita K. Cheema

Journal:

International Journal of Mass Spectrometry

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

41

[IEEE The 2006 IEEE International Joint Conference on Neural Network Proceedings - Vancouver, BC, Canada (2006.07.16-2006.07.21)] The 2006 IEEE International Joint Conference on Neural Network Proceedings - Estimation of Ocean Water Chlorophyll-a Concentration Using Fuzzy C-means Clustering and Artificial Neural Networks

Ressom, H.W., Turner, K., Musavi, M.T.

Year:

2006

Language:

english

File:

PDF, 2.29 MB

english, 2006

42

[ACM Press the 2005 conference - Washington DC, USA (2005.06.25-2005.06.29)] Proceedings of the 2005 conference on Genetic and evolutionary computation - GECCO '05 - Particle swarm optimization for analysis of mass spectral serum profiles

Ressom, H., Loffredo, C. A., Goldman, R., Varghese, R. S., Saha, D., Orvisky, E., Goldman, L., Petricoin, E. F., Conrads, T. P., Veenstra, T. D., Abdel-Hamid, M.

Year:

2005

Language:

english

File:

PDF, 1.15 MB

english, 2005

43

[IEEE International Joint Conference on Neural Networks (IJCNN'01) - Washington, DC, USA (15-19 July 2001)] IJCNN'01. International Joint Conference on Neural Networks. Proceedings (Cat. No.01CH37222) - Use of clustering to improve performance in fuzzy gene expression analysis

Reynolds, R., Ressom, H., Musavi, M.T., Domnisoru, C.

Year:

2001

Language:

english

File:

PDF, 809 KB

english, 2001

44

Establishment of ornithine transcarbamylase deficiency-derived primary human hepatocyte with hepatic functions

Su, Shan, Di Poto, Cristina, Kroemer, Alexander H., Cui, Wanxing, Roy, Rabindra, Liu, Xuefeng, Ressom, Habtom W.

Journal:

Experimental Cell Research

Year:

2019

Language:

english

File:

PDF, 1.48 MB

english, 2019

45

[IEEE 2019 41st Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) - Berlin, Germany (2019.7.23-2019.7.27)] 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - MOTA: Multi-omic integrative analysis for biomarker discovery

Fan, Ziling, Zhou, Yuan, Ressom, Habtom W.

Year:

2019

Language:

english

File:

PDF, 1.07 MB

english, 2019

46

Identification of Functional Modules by Integration of Multiple Data Sources Using a Bayesian Network Classifier

Wang, J., Zuo, Y., Liu, L., Man, Y., Tadesse, M. G., Ressom, H. W.

Journal:

Circulation Cardiovascular Genetics

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

47

[IEEE The 2006 IEEE International Joint Conference on Neural Network Proceedings - Vancouver, BC, Canada (16-21 July 2006)] The 2006 IEEE International Joint Conference on Neural Network Proceedings - Estimation of Ocean Water Chlorophyll-a Concentration Using Fuzzy C-means Clustering and Artificial Neural Networks

Ressom, H.W., Turner, K., Musavi, M.T.

Year:

2006

Language:

english

File:

PDF, 2.29 MB

english, 2006

48

[IEEE Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society - New York, NY (2006.08.30-2006.09.3)] 2006 International Conference of the IEEE Engineering in Medicine and Biology Society - Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra

Ressom, Habtom W., Varghese, Rency S., Orvisky, Eduard, Drake, Steven K., Hortin, Glen L., Abdel-Hamid, Mohamed, Loffredo, Christopher A., Goldman, Radoslav

Year:

2006

Language:

english

File:

PDF, 670 KB

english, 2006

49

Protein network construction using reverse phase protein array data

Varghese, Rency S., Zuo, Yiming, Zhao, Yi, Zhang, Yong-Wei, Jablonski, Sandra A., Pierobon, Mariaelena, Petricoin, Emanuel F., Ressom, Habtom W., Weiner, Louis M.

Journal:

Year:

2017

Language:

english

File:

PDF, 4.03 MB

english, 2017

50

Identification of aberrant pathways and network activities from high-throughput data

Wang, J., Zhang, Y., Marian, C., Ressom, H. W.

Journal:

Briefings in Bioinformatics

Year:

2012

Language:

english

File:

PDF, 530 KB

english, 2012

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