Rigoutsos, I.: search on Z-Library

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51

HuR Posttranscriptionally Regulates WEE1: Implications for the DNA Damage Response in Pancreatic Cancer Cells

Lal, S., Burkhart, R. A., Beeharry, N., Bhattacharjee, V., Londin, E. R., Cozzitorto, J. A., Romeo, C., Jimbo, M., Norris, Z. A., Yeo, C. J., Sawicki, J. A., Winter, J. M., Rigoutsos, I., Yen, T. J.,

Journal:

Cancer Research

Year:

2014

Language:

english

File:

PDF, 3.40 MB

english, 2014

52

Mitochondrial tRNA-lookalikes in nuclear chromosomes: Could they be functional?

Telonis, Aristeidis G, Kirino, Yohei, Rigoutsos, Isidore

Journal:

Year:

2015

Language:

english

File:

PDF, 221 KB

english, 2015

53

119. HIV-1 Proviral DNA Excision and Deactivation Using a CRISPR/Cas9 “Nickase” Targeted to the 5’ and 3’ LTR

Scott, Tristan, Saayman, Sheena, Lazar, Daniel, Arbuthnot, Patrick, Rigoutsos, Isidor, Morris, Kevin, Kashanchi, Fatah, Weinberg, Marco

Journal:

Molecular Therapy

Year:

2015

Language:

english

File:

PDF, 310 KB

english, 2015

54

MiR-103a-3p targets the 5′ UTR of GPRC5A in pancreatic cells

Zhou, Honglei, Rigoutsos, Isidore

Journal:

Year:

2014

Language:

english

File:

PDF, 806 KB

english, 2014

55

Leveraging functional annotations in genetic risk prediction for human complex diseases

Hu, Yiming, Lu, Qiongshi, Powles, Ryan, Yao, Xinwei, Yang, Can, Fang, Fang, Xu, Xinran, Zhao, Hongyu, Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.22 MB

english, 2017

56

The Expression of MicroRNA miR-107 Decreases Early in Alzheimer's Disease and May Accelerate Disease Progression through Regulation of -Site Amyloid Precursor Protein-Cleaving Enzyme 1

Wang, W.-X., Rajeev, B. W., Stromberg, A. J., Ren, N., Tang, G., Huang, Q., Rigoutsos, I., Nelson, P. T.

Journal:

Journal of Neuroscience

Year:

2008

Language:

english

File:

PDF, 864 KB

english, 2008

57

Race disparities in the contribution of miRNA isoforms and tRNA-derived fragments to triple-negative breast cancer

Telonis, Aristeidis G, Rigoutsos, Isidore

Journal:

Cancer Research

Year:

2017

Language:

english

File:

PDF, 1.23 MB

english, 2017

58

Sensitive detection of sequence similarity using combinatorial pattern discovery: A challenging study of two distantly related protein families

Nikos Darzentas, Isidore Rigoutsos, Christos A. Ouzounis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.01 MB

english, 2005

59

BLOSUM62 miscalculations improve search performance

Styczynski, Mark P, Jensen, Kyle L, Rigoutsos, Isidore, Stephanopoulos, Gregory

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 182 KB

english, 2008

60

OMiR: Identification of associations between OMIM diseases and microRNAs

Simona Rossi, Aristotelis Tsirigos, Antonio Amoroso, Nicoletta Mascellani, Isidore Rigoutsos, George A. Calin, Stefano Volinia

Journal:

Year:

2011

Language:

english

File:

PDF, 301 KB

english, 2011

61

A generic motif discovery algorithm for sequential data

Jensen, K. L., Styczynski, M. P., Rigoutsos, I., Stephanopoulos, G. N.

Journal:

Year:

2006

Language:

english

File:

PDF, 1.38 MB

english, 2006

62

Integrative Multi-omic Analysis of Human Platelet eQTLs Reveals Alternative Start Site in Mitofusin 2

Simon, Lukas M., Chen, Edward S., Edelstein, Leonard C., Kong, Xianguo, Bhatlekar, Seema, Rigoutsos, Isidore, Bray, Paul F., Shaw, Chad A.

Journal:

The American Journal of Human Genetics

Year:

2016

Language:

english

File:

PDF, 1.64 MB

english, 2016

63

Erratum: ERRATUM: Molecular dynamics simulations of Ago silencing complexes reveal a large repertoire of admissible 'seed-less' targets

Xia, Zhen, Clark, Peter, Huynh, Tien, Loher, Phillipe, Zhao, Yue, Chen, Huang-Wen, Ren, Pengyu, Rigoutsos, Isidore, Zhou, Ruhong

Journal:

Scientific Reports

Year:

2012

Language:

english

File:

PDF, 139 KB

english, 2012

64

tRNA Fragments Show Intertwining with mRNAs of Specific Repeat Content and Have Links to Disparities

Telonis, Aristeidis G, Loher, Phillipe, Magee, Rogan, Pliatsika, Venetia, Londin, Eric, Kirino, Yohei, Rigoutsos, Isidore

Journal:

Cancer Research

Year:

2019

Language:

english

File:

PDF, 1.63 MB

english, 2019

65

MicroRNA 125a and its regulation of the p53 tumor suppressor gene

Yingjie Zhang, Jin-Song Gao, Xiaoli Tang, Lynne D. Tucker, Peter Quesenberry, Isidore Rigoutsos, Bharat Ramratnam

Journal:

Year:

2009

Language:

english

File:

PDF, 1.07 MB

english, 2009

66

Inhibition of the Single Downstream Target BAG1 Activates the Latent Apoptotic Potential of MYC

Zhang, X.-Y., Pfeiffer, H. K., Mellert, H. S., Stanek, T. J., Sussman, R. T., Kumari, A., Yu, D., Rigoutsos, I., Thomas-Tikhonenko, A., Seidel, H. E., Chodosh, L. A., Packham, G., Baserga, R., McMahon

Journal:

Molecular and Cellular Biology

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

67

Biomolecular Events in Cancer Revealed by Attractor Metagenes

Cheng, Wei-Yi, Yang, Tai-Hsien Ou, Anastassiou, Dimitris, Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 804 KB

english, 2013

68

Report on BIOKDD04

Zaki, Mohammed J., Morishita, Shinichi, Rigoutsos, Isidore

Journal:

ACM SIGKDD Explorations Newsletter

Year:

2004

Language:

english

File:

PDF, 85 KB

english, 2004

69

Gene-expression forum: Decoy for microRNAs

Rigoutsos, Isidore, Furnari, Frank

Journal:

Year:

2010

Language:

english

File:

PDF, 195 KB

english, 2010

70

The Evi1, microRNA-143, K-Ras axis in colon cancer

Jin-Song Gao, Yingjie Zhang, Xiaoli Tang, Lynne D. Tucker, Patrick M. Tarwater, Peter J. Quesenberry, Isidore Rigoutsos, Bharat Ramratnam

Journal:

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

71

Argonaute CLIP-Seq reveals miRNA targetome diversity across tissue types

Clark, Peter M., Loher, Phillipe, Quann, Kevin, Brody, Jonathan, Londin, Eric R., Rigoutsos, Isidore

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 2.71 MB

english, 2014

72

QSAR in grossly underdetermined systems: Opportunities and issues

Platt, D. E., Parida, L., Gao, Y., Floratos, A., Rigoutsos, I.

Journal:

IBM Journal of Research and Development

Year:

2001

Language:

english

File:

PDF, 130 KB

english, 2001

73

Aging-associated changes in microRNA expression profile of internal anal sphincter smooth muscle: Role of microRNA-133a

Singh, Jagmohan, Boopathi, Ettickan, Addya, Sankar, Phillips, Benjamin, Rigoutsos, Isidore, Penn, Raymond B., Rattan, Satish

Journal:

American Journal of Physiology - Gastrointestinal and Liver Physiology

Year:

2016

Language:

english

File:

PDF, 1.24 MB

english, 2016

74

Global secondary structure packing angle bias in proteins

Daniel E. Platt, Concettina Guerra, Giuseppe Zanotti, Isidore Rigoutsos

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 379 KB

english, 2003

75

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

Mavromatis, Konstantinos, Ivanova, Natalia, Barry, Kerrie, Shapiro, Harris, Goltsman, Eugene, McHardy, Alice C, Rigoutsos, Isidore, Salamov, Asaf, Korzeniewski, Frank, Land, Miriam

Journal:

Year:

2007

Language:

english

File:

PDF, 332 KB

english, 2007

76

Short RNAs: How Big Is This Iceberg?

Isidore Rigoutsos

Journal:

Current Biology

Year:

2010

Language:

english

File:

PDF, 574 KB

english, 2010

77

HuR is a post-transcriptional regulator of core metabolic enzymes in pancreatic cancer

Burkhart, Richard A, Pineda, Danielle M, Chand, Saswati N, Romeo, Carmella, Londin, Eric R, Karoly, Edward D, Cozzitorto, Joseph A, Rigoutsos, Isidore, Yeo, Charles J, Brody, Jonathan R, Winter, Jorda

Journal:

Year:

2013

Language:

english

File:

PDF, 2.58 MB

english, 2013

78

Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs

Tsirigos, A., Rigoutsos, I.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 4.00 MB

english, 2008

79

YAMAT-seq: an efficient method for high-throughput sequencing of mature transfer RNAs

Shigematsu, Megumi, Honda, Shozo, Loher, Phillipe, Telonis, Aristeidis G., Rigoutsos, Isidore, Kirino, Yohei

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.05 MB

english, 2017

80

Ribosomal RNA fragmentation into short RNAs (rRFs) is modulated in a sex- and population of origin-specific manner

Cherlin, Tess, Magee, Rogan, Jing, Yi, Pliatsika, Venetia, Loher, Phillipe, Rigoutsos, Isidore

Journal:

Year:

2020

File:

PDF, 2.98 MB

2020

81

Non-α-helical elements modulate polytopic membrane protein architecture

R.Peter Riek, Isidore Rigoutsos, Jiri Novotny, Robert M Graham

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 1.18 MB

english, 2001

82

Dynamic changes in the human methylome during differentiation

Laurent, L., Wong, E., Li, G., Huynh, T., Tsirigos, A., Ong, C. T., Low, H. M., Kin Sung, K. W., Rigoutsos, I., Loring, J., Wei, C.-L.

Journal:

Genome Research

Year:

2010

Language:

english

File:

PDF, 1.62 MB

english, 2010

83

Atypical transcription of microRNA gene fragments

Song Gao, J., Zhang, Y., Li, M., Tucker, L. D., Machan, J. T., Quesenberry, P., Rigoutsos, I., Ramratnam, B.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 12.44 MB

english, 2010

84

MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data

Loher, Phillipe, Telonis, Aristeidis G., Rigoutsos, Isidore

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.41 MB

english, 2017

85

MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation

Tay, Yvonne, Zhang, Jinqiu, Thomson, Andrew M., Lim, Bing, Rigoutsos, Isidore

Journal:

Year:

2008

Language:

english

File:

PDF, 605 KB

english, 2008

86

Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes

Rigoutsos, I., Huynh, T., Miranda, K., Tsirigos, A., McHardy, A., Platt, D.

Journal:

Proceedings of the National Academy of Sciences

Year:

2006

Language:

english

File:

PDF, 3.26 MB

english, 2006

87

by competing endogenous mRNAs

Tay, Yvonne, Kats, Lev, Salmena, Leonardo, Weiss, Dror, Tan, Shen Mynn, Ala, Ugo, Karreth, Florian, Poliseno, Laura, Provero, Paolo, Cunto, Ferdinando Di, Rigoutsos, Isidore, Pandolfi, Pier Paolo

Year:

2012

Language:

english

File:

PDF, 1.76 MB

english, 2012

88

TRNA-derived fragments as sex-dependent circulating candidate biomarkers for Parkinson's disease

Magee, Rogan, Londin, Eric, Rigoutsos, Isidore

Journal:

Parkinsonism & Related Disorders

Year:

2019

Language:

english

File:

PDF, 1.78 MB

english, 2019

89

What's in the mix: phylogenetic classification of metagenome sequence samples

Alice C. McHardy, Isidore Rigoutsos

Journal:

Current Opinion in Microbiology

Year:

2007

Language:

english

File:

PDF, 121 KB

english, 2007

90

New Tricks for Animal MicroRNAs: Targeting of Amino Acid Coding Regions at Conserved and Nonconserved Sites

Journal:

Cancer Research

Year:

2009

Language:

english

File:

PDF, 334 KB

english, 2009

91

Most Random Gene Expression Signatures Are Significantly Associated with Breast Cancer Outcome

Venet, David, Dumont, Jacques E., Detours, Vincent, Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 443 KB

english, 2011

92

Post-transcriptional Regulation of BRCA2 through Interactions with miR-19a and miR-19b

Mogilyansky, Elena, Clark, Peter, Quann, Kevin, Zhou, Honglei, Londin, Eric, Jing, Yi, Rigoutsos, Isidore

Journal:

Frontiers in Genetics

Year:

2016

Language:

english

File:

PDF, 862 KB

english, 2016

93

Accurate phylogenetic classification of variable-length DNA fragments

McHardy, Alice Carolyn, Martín, Héctor García, Tsirigos, Aristotelis, Hugenholtz, Philip, Rigoutsos, Isidore

Journal:

Year:

2006

Language:

english

File:

PDF, 324 KB

english, 2006

94

The microRNAs within the DLK1-DIO3 genomic region: involvement in disease pathogenesis

Benetatos, Leonidas, Hatzimichael, Eleftheria, Londin, Eric, Vartholomatos, George, Loher, Phillipe, Rigoutsos, Isidore, Briasoulis, Evangelos

Journal:

Cellular and Molecular Life Sciences

Year:

2013

Language:

english

File:

PDF, 493 KB

english, 2013

95

Geometric Hashing

Rigoutsos, I., Wolfson, H.J.

Journal:

IEEE Computational Science and Engineering

Year:

1997

Language:

english

File:

PDF, 57 KB

english, 1997

96

[IEEE Comput. Soc. Press Workshop on Directions in Automated CAD-Based Vision - Maui, HI, USA (2-3 June 1991)] [1991 Proceedings] Workshop on Directions in Automated CAD-Based Vision - Implementation of geometric hashing on the Connection Machine

Rigoutsos, I., Hummel, R.

Year:

1991

Language:

english

File:

PDF, 770 KB

english, 1991

97

In Silico Pattern-Based Analysis of the Human Cytomegalovirus Genome

Rigoutsos, I., Novotny, J., Huynh, T., Chin-Bow, S. T., Parida, L., Platt, D., Coleman, D., Shenk, T.

Journal:

Journal of Virology

Year:

2003

Language:

english

File:

PDF, 5.85 MB

english, 2003

98

Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity

Telonis, Aristeidis G., Loher, Phillipe, Jing, Yi, Londin, Eric, Rigoutsos, Isidore

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

99

Profiles of miRNA Isoforms and tRNA Fragments in Prostate Cancer

Magee, Rogan G., Telonis, Aristeidis G., Loher, Phillipe, Londin, Eric, Rigoutsos, Isidore

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 4.87 MB

english, 2018

100

Insights into the Regulation of a Common Variant ofHMGA2Associated with Human Height During Embryonic Development

Yvonne Tay, Sabrina Peter, Isidore Rigoutsos, Paulette Barahona, Sohail Ahmed, Peter Dröge

Journal:

Stem Cell Reviews and Reports

Year:

2009

Language:

english

File:

PDF, 268 KB

english, 2009

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