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1

PAX7 expression in sarcomas bearing the EWSR1-NFATC2 translocation

Charville, Gregory W., Wang, Wei-Lien, Ingram, Davis R., Roy, Angshumoy, Thomas, Dafydd, Patel, Rajiv M., Hornick, Jason L., van de Rijn, Matt, Lazar, Alexander J.

Journal:

Modern Pathology

Year:

2018

Language:

english

File:

PDF, 296 KB

english, 2018

2

Immunohistochemistry for PAX7 is a useful confirmatory marker for Ewing sarcoma in decalcified bone marrow core biopsy specimens

Fernandez-Pol, Sebastian, van de Rijn, Matt, Natkunam, Yasodha, Charville, Gregory W.

Journal:

Virchows Archiv

Year:

2018

Language:

english

File:

PDF, 5.56 MB

english, 2018

3

Variations in stromal signatures in breast and colorectal cancer metastases

Jonathan A Webster, Andrew H Beck, Mimansa Sharma, Inigo Espinosa, Britta Weigelt, Marthe Schreuder, Kelli D Montgomery, Kristin C Jensen, Matt van de Rijn, Robert West

Journal:

The Journal of Pathology

Year:

2010

Language:

english

File:

PDF, 401 KB

english, 2010

4

Systematic variation in gene expression patterns in human cancer cell lines

Ross, Douglas T., Scherf, Uwe, Eisen, Michael B., Perou, Charles M., Rees, Christian, Spellman, Paul, Iyer, Vishwanath, Jeffrey, Stefanie S., Van de Rijn, Matt, Waltham, Mark

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 1.47 MB

english, 2000

5

Loss of H3K27 tri-methylation is a diagnostic marker for malignant peripheral nerve sheath tumors and an indicator for an inferior survival

Cleven, Arjen HG, Al Sannaa, Ghadah A, Briaire-de Bruijn, Inge, Ingram, Davis R, van de Rijn, Matt, Rubin, Brian P, de Vries, Maurits W, Watson, Kelsey L, Torres, Kelia E, Wang, Wei-Lien, van Duinen,

Journal:

Modern Pathology

Year:

2016

File:

PDF, 40 KB

2016

6

EWSR1 fusion proteins mediate PAX7 expression in Ewing sarcoma

Charville, Gregory W, Wang, Wei-Lien, Ingram, Davis R, Roy, Angshumoy, Thomas, Dafydd, Patel, Rajiv M, Hornick, Jason L, van de Rijn, Matt, Lazar, Alexander J

Journal:

Modern Pathology

Year:

2017

Language:

english

File:

PDF, 2.12 MB

english, 2017

7

Gene Expression Profiles of Cutaneous B Cell Lymphoma

Storz, Monique N, van de Rijn, Matt, Kim, Youn H, Mraz-Gernhard, Serena, Hoppe, Richard T, Kohler, Sabine

Journal:

The Journal of Investigative Dermatology

Year:

2003

Language:

english

File:

PDF, 443 KB

english, 2003

8

Increased midkine expression correlates with desmoid tumour recurrence: a potential biomarker and therapeutic target

Chiara Colombo, Chad J Creighton, Markus P Ghadimi, Svetlana Bolshakov, Carla L Warneke, Yiqun Zhang, Kristelle Lusby, Shirley Zhu, Alexander J Lazar, Robert B West, Matt van de Rijn, Dina Lev

Journal:

The Journal of Pathology

Year:

2011

Language:

english

File:

PDF, 606 KB

english, 2011

9

Towards a novel classification of human malignancies based on gene expression patterns

Ash A. Alizadeh, Douglas T. Ross, Charles M. Perou, Matt van de Rijn

Journal:

The Journal of Pathology

Year:

2001

Language:

english

File:

PDF, 782 KB

english, 2001

10

Gene expression profiling for the investigation of soft tissue sarcoma pathogenesis and the identification of diagnostic, prognostic, and predictive biomarkers

Andrew H. Beck, Robert B. West, Matt van de Rijn

Journal:

Virchows Archiv

Year:

2010

Language:

english

File:

PDF, 409 KB

english, 2010

11

Genome-wide analysis of DNA copy number variation in breast cancer using DNA microarrays

Pollack, Jonathan R., Perou, Charles M., Sorlie, Therese, Alizadeh, Ash A., Rees, Christian, Eise, Michael B., Pergamenschikov, Alexander, Williams, Cheryl F., van de Rijn, Matt, Jeffrey, Stefanie S.,

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 113 KB

english, 1999

12

10.1038/35021093

Perou, Charles M., Sørlie, Therese, Eisen, Michael B., van de Rijn, Matt, Jeffrey, Stefanie S., Rees, Christian A., Pollack, Jonathan R., Ross, Douglas T., Johnsen, Hilde, Akslen, Lars A., Fluge, Øyst

Journal:

Year:

2000

Language:

english

File:

PDF, 712 KB

english, 2000

13

The fibromatosis signature defines a robust stromal response in breast carcinoma

Beck, Andrew H, Espinosa, Inigo, Gilks, C Blake, van de Rijn, Matt, West, Robert B

Journal:

Laboratory Investigation

Year:

2008

Language:

english

File:

PDF, 595 KB

english, 2008

14

Characterization of a novel anti-fatty acid synthase (FASN) antiserum in breast tissue

Jensen, Kristin C, Schaeffer, David F, Cheang, Maggie, Montgomery, Kelli, West, Robert B, Gilks, C Blake, Ross, Doug, Turashvili, Gulisa, Schnitt, Stuart, van de Rijn, Matt

Journal:

Modern Pathology

Year:

2008

Language:

english

File:

PDF, 513 KB

english, 2008

15

Intraepithelial T cells and prognosis in ovarian carcinoma: novel associations with stage, tumor type, and BRCA1 loss

Clarke, Blaise, Tinker, Anna V, Lee, Cheng-Han, Subramanian, Subbaya, van de Rijn, Matt, Turbin, Dmitry, Kalloger, Steve, Han, Guangming, Ceballos, Kathy, Cadungog, Mark G

Journal:

Modern Pathology

Year:

2008

Language:

english

File:

PDF, 414 KB

english, 2008

16

A panel of antibodies to determine site of origin and malignancy in smooth muscle tumors

Lee, Cheng-Han, Turbin, Dmitry A, Sung, Y-C Vanessa, Espinosa, Inigo, Montgomery, Kelli, van de Rijn, Matt, Gilks, C Blake

Journal:

Modern Pathology

Year:

2009

Language:

english

File:

PDF, 763 KB

english, 2009

17

Novel endothelial cell markers in hepatocellular carcinoma

Chen, Xin, Higgins, John, Cheung, Siu-Tim, Li, Rui, Mason, Veronica, Montgomery, Kelli, Fan, Sheung-Tat, Rijn, Matt van de, So, Samuel

Journal:

Modern Pathology

Year:

2004

Language:

english

File:

PDF, 772 KB

english, 2004

18

TMA-Combiner, a simple software tool to permit analysis of replicate cores on tissue microarrays

Liu, Chih Long, Montgomery, Kelli D, Natkunam, Yasodha, West, Robert B, Nielsen, Torsten O, Cheang, Maggie C U, Turbin, Dmitry A, Marinelli, Robert J, van de Rijn, Matt, Higgins, John P T

Journal:

Modern Pathology

Year:

2005

Language:

english

File:

PDF, 457 KB

english, 2005

19

A variant TMPRSS2 isoform and ERG fusion product in prostate cancer with implications for molecular diagnosis

Lapointe, Jacques, Kim, Young H, Miller, Melinda A, Li, Chunde, Kaygusuz, Gulsah, van de Rijn, Matt, Huntsman, David G, Brooks, James D, Pollack, Jonathan R

Journal:

Modern Pathology

Year:

2007

Language:

english

File:

PDF, 156 KB

english, 2007

20

The utility of PAX5 immunohistochemistry in the diagnosis of undifferentiated malignant neoplasms

Jensen, Kristin C, Higgins, John P T, Montgomery, Kelli, Kaygusuz, Gulsah, van de Rijn, Matt, Natkunam, Yasodha

Journal:

Modern Pathology

Year:

2007

Language:

english

File:

PDF, 572 KB

english, 2007

21

Identification of prognostically relevant and reproducible subsets of endometrial adenocarcinoma based on clustering analysis of immunostaining data

Alkushi, Abdulmohsen, Clarke, Blaise A, Akbari, Majid, Makretsov, Nikita, Lim, Peter, Miller, Dianne, Magliocco, Anthony, Coldman, Andrew, van de Rijn, Matt, Huntsman, David

Journal:

Modern Pathology

Year:

2007

Language:

english

File:

PDF, 225 KB

english, 2007

22

Gene expression profiling identifies p63 as a diagnostic marker for giant cell tumor of the bone

Lee, Cheng-Han, Espinosa, Inigo, Jensen, Kristin C, Subramanian, Subbaya, Zhu, Shirley X, Varma, Sushama, Montgomery, Kelli D, Nielsen, Torsten O, van de Rijn, Matt, West, Robert B

Journal:

Modern Pathology

Year:

2008

Language:

english

File:

PDF, 369 KB

english, 2008

23

Human melanoma-initiating cells express neural crest nerve growth factor receptor CD271

Boiko, Alexander D., Razorenova, Olga V., van de Rijn, Matt, Swetter, Susan M., Johnson, Denise L., Ly, Daphne P., Butler, Paris D., Yang, George P., Joshua, Benzion, Kaplan, Michael J.

Journal:

Year:

2010

Language:

english

File:

PDF, 597 KB

english, 2010

24

Human melanoma-initiating cells express neural crest nerve growth factor receptor CD271

Boiko, Alexander D., Razorenova, Olga V., van de Rijn, Matt, Swetter, Susan M., Johnson, Denise L., Ly, Daphne P., Butler, Paris D., Yang, George P., Joshua, Benzion, Kaplan, Michael J.

Journal:

Year:

2011

Language:

english

File:

PDF, 88 KB

english, 2011

25

A Systems Biology Approach to Anatomic Diversity of Skin

Rinn, John L, Wang, Jordon K, Liu, Helen, Montgomery, Kelli, van de Rijn, Matt, Chang, Howard Y

Journal:

The Journal of Investigative Dermatology

Year:

2008

Language:

english

File:

PDF, 1.36 MB

english, 2008

26

Hep Par 1 Antibody Stain for the Differential Diagnosis of Hepatocellular Carcinoma: 676 Tumors Tested Using Tissue Microarrays and Conventional Tissue Sections

Fan, Zhen, van de Rijn, Matt, Montgomery, Kelli, Rouse, Robert V.

Journal:

Modern Pathology

Year:

2003

Language:

english

File:

PDF, 1.82 MB

english, 2003

27

Ossifying fibromyxoid tumor of soft parts presenting as a scalp cyst

John T. Seykora, Cynthia Kutcher, Matt Van De Rijn, Leonard Dzubow, Jaqueline Junkins-Hopkins, Micheal Ioffreda

Journal:

Journal of Cutaneous Pathology

Year:

2006

Language:

english

File:

PDF, 4.29 MB

english, 2006

28

Distinction between serous tumors of low malignant potential and serous carcinomas based on global mRNA expression profiling

C. Blake Gilks, Barbara C. Vanderhyden, Shirley Zhu, Matt van de Rijn, Teri A. Longacre

Journal:

Gynecologic Oncology

Year:

2005

Language:

english

File:

PDF, 579 KB

english, 2005

29

Uterine leiomyosarcomas: Tumor size, mitotic index, and biomarkers Ki67, and Bcl-2 identify two groups with different prognosis

Emanuela D'Angelo, Inigo Espinosa, Rola Ali, C. Blake Gilks, Matt van de Rijn, Cheng-Han Lee, Jaime Prat

Journal:

Gynecologic Oncology

Year:

2011

Language:

english

File:

PDF, 756 KB

english, 2011

30

Other Targetable Sarcomas

Veridiana Pires de Camargo, Matt van de Rijn, Enrique de Alava, Juan Madoz-Gúrpide, Silvana Pilotti, Margaret von Mehren, Florence Pedeutour, Robert G. Maki, Piotr Rutkowski, David M. Thomas

Journal:

Seminars in Oncology

Year:

2009

Language:

english

File:

PDF, 1.15 MB

english, 2009

31

Challenges in developing a molecular characterization of cancer

Jonathan R Pollack, Matt van de Rijn, David Botstein

Journal:

Seminars in Oncology

Year:

2002

Language:

english

File:

PDF, 1.51 MB

english, 2002

32

Gross genomic alterations and gene expression profiles of high- grade serous carcinoma of the ovary with and without BRCA1 inactivation

Manohar Pradhan, Björn Å Risberg, Claes G Tropé, Matt van de Rijn, C Blake Gilks, Cheng-Han Lee

Journal:

Year:

2010

Language:

english

File:

PDF, 450 KB

english, 2010

33

A compact VEGF signature associated with distant metastases and poor outcomes

Zhiyuan Hu, Cheng Fan, Chad Livasy, Xiaping He, Daniel S Oh, Matthew G Ewend, Lisa A Carey, Subbaya Subramanian, Robert West, Francis Ikpatt, Olufunmilayo I Olopade, Matt van de Rijn, Charles M Perou

Journal:

Year:

2009

Language:

english

File:

PDF, 1.77 MB

english, 2009

34

RANTES chemokine expression in diseased and normal human tissues

Irene von Luettichau, Peter J. Nelson, James M. Pattison, Matt van de Rijn, Phil Huie, Roger Warnke, Christian J. Wiedermann, Rolf A.K. Stahl, Richard K. Sibley, Alan M. Krensky

Journal:

Year:

1996

Language:

english

File:

PDF, 257 KB

english, 1996

35

Validation of immature adipogenic status and identification of prognostic biomarkers in myxoid liposarcoma using tissue microarrays

Hongwei Cheng, Jim Dodge, Erika Mehl, Shuzhen Liu, Neal Poulin, Matt van de Rijn, Torsten O. Nielsen

Journal:

Human Pathology

Year:

2009

Language:

english

File:

PDF, 872 KB

english, 2009

36

Tissue Microarray Validation of Epidermal Growth Factor Receptor and SALL2 in Synovial Sarcoma with Comparison to Tumors of Similar Histology

Torsten O. Nielsen, Forrest D. Hsu, John X. O'Connell, C. Blake Gilks, Poul H.B. Sorensen, Sabine Linn, Robert B. West, Chih Long Liu, David Botstein, Patrick O. Brown, Matt van de Rijn

Journal:

The American Journal of Pathology

Year:

2003

Language:

english

File:

PDF, 629 KB

english, 2003

37

Gene Expression Patterns in Renal Cell Carcinoma Assessed by Complementary DNA Microarray

John P.T. Higgins, Rajesh Shinghal, Harcharan Gill, Jeffrey H. Reese, Martha Terris, Ronald J. Cohen, Michael Fero, Jonathan R. Pollack, Matt van de Rijn, James D. Brooks

Journal:

The American Journal of Pathology

Year:

2003

Language:

english

File:

PDF, 955 KB

english, 2003

38

Gene Expression Studies on Soft Tissue Tumors

Matt van de Rijn, Brian P. Rubin

Journal:

The American Journal of Pathology

Year:

2002

Language:

english

File:

PDF, 77 KB

english, 2002

39

Software Tools for High-Throughput Analysis and Archiving of Immunohistochemistry Staining Data Obtained with Tissue Microarrays

Chih Long Liu, Wijan Prapong, Yasodha Natkunam, Ash Alizadeh, Kelli Montgomery, C. Blake Gilks, Matt van de Rijn

Journal:

The American Journal of Pathology

Year:

2002

Language:

english

File:

PDF, 1.80 MB

english, 2002

40

Expression of Cytokeratins 17 and 5 Identifies a Group of Breast Carcinomas with Poor Clinical Outcome

Matt van de Rijn, Charles M. Perou, Rob Tibshirani, Phillippe Haas, Olli Kallioniemi, Juha Kononen, Joachim Torhorst, Guido Sauter, Markus Zuber, Ossi R. Köchli, Frank Mross, Holger Dieterich, Rob Sei

Journal:

The American Journal of Pathology

Year:

2002

Language:

english

File:

PDF, 225 KB

english, 2002

41

Oncogenic Regulators and Substrates of the Anaphase Promoting Complex/Cyclosome Are Frequently Overexpressed in Malignant Tumors

Norman L. Lehman, Rob Tibshirani, Jerry Y. Hsu, Yasodha Natkunam, Brent T. Harris, Robert B. West, Marilyn A. Masek, Kelli Montgomery, Matt van de Rijn, Peter K. Jackson

Journal:

The American Journal of Pathology

Year:

2007

Language:

english

File:

PDF, 1.02 MB

english, 2007

42

Experimental approaches to the study of cancer–stroma interactions: recent findings suggest a pivotal role for stroma in carcinogenesis

West, Robert B, van de Rijn, Matt

Journal:

Laboratory Investigation

Year:

2007

Language:

english

File:

PDF, 228 KB

english, 2007

43

Colonic adenocarcinoma presenting as supraclavicular lymphadenopathy in a 26-yr-old man: a case report

Alyssa M Krasinskas, Ernest F Rosato, Marshall T Partington, Charles J Whalen, Carol Reynolds, Matt van de Rijn, Kathleen T Montone

Journal:

American Journal of Gastroenterology

Year:

1999

Language:

english

File:

PDF, 148 KB

english, 1999

44

Coordinate Expression of Colony-Stimulating Factor-1 and Colony-Stimulating Factor-1-Related Proteins Is Associated with Poor Prognosis in Gynecological and Nongynecological Leiomyosarcoma

Inigo Espinosa, Andrew H. Beck, Cheng-Han Lee, Shirley Zhu, Kelli D. Montgomery, Robert J. Marinelli, Kristen N. Ganjoo, Torsten O. Nielsen, C. Blake Gilks, Robert B. West, Matt van de Rijn

Journal:

The American Journal of Pathology

Year:

2009

Language:

english

File:

PDF, 1.03 MB

english, 2009

45

GENETICS OF SOFT TISSUE TUMORS

Rijn, Matt van de, Fletcher, Jonathan A.

Journal:

Annual Review of Pathology Mechanisms of Disease

Year:

2006

Language:

english

File:

PDF, 966 KB

english, 2006

46

Secondary breast angiosarcoma and germ line BRCA mutations: discussion of genetic susceptibility

Wen Jiang, James D. Murphy, Matt van de Rijn…

Journal:

Journal of Radiation Oncology

Year:

2013

Language:

english

File:

PDF, 244 KB

english, 2013

47

Stromal signatures in endometrioid endometrial carcinomas

Espinosa, Iñigo, Catasus, Lluis, D′Angelo, Emanuela, Mozos, Ana, Pedrola, Nuria, Bértolo, Cristina, Ferrer, Irene, Zannoni, Gian Franco, West, Robert B, van de Rijn, Matt, Matias-Guiu, Xavier, Prat, J

Journal:

Modern Pathology

Year:

2014

Language:

english

File:

PDF, 490 KB

english, 2014

48

Modeling Clear Cell Sarcomagenesis in the Mouse: Cell of Origin Differentiation State Impacts Tumor Characteristics

Straessler, Krystal M., Jones, Kevin B., Hu, Hao, Jin, Huifeng, van de Rijn, Matt, Capecchi, Mario R.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.18 MB

english, 2013

49

Distinctive Gene Expression Patterns in Human Mammary Epithelial Cells and Breast Cancers

Charles M. Perou, Stefanie S. Jeffrey, Matt van de Rijn, Christian A. Rees, Michael B. Eisen, Douglas T. Ross, Alexander Pergamenschikov, Cheryl F. Williams, Shirley X. Zhu, Jeffrey C. F. Lee, Deval L

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.63 MB

english, 1999

50

Gene Expression Profiling of Breast Cancer

Cheang, Maggie C.U., van de Rijn, Matt, Nielsen, Torsten O.

Journal:

Annual Review of Pathology Mechanisms of Disease

Year:

2008

Language:

english

File:

PDF, 1.49 MB

english, 2008