Schymkowitz: search on Z-Library

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1

Protein Phase Separation: A New Phase in Cell Biology

Boeynaems, Steven, Alberti, Simon, Fawzi, Nicolas L., Mittag, Tanja, Polymenidou, Magdalini, Rousseau, Frederic, Schymkowitz, Joost, Shorter, James, Wolozin, Benjamin, Van Den Bosch, Ludo, Tompa, Pete

Journal:

Trends in Cell Biology

Year:

2018

Language:

english

File:

PDF, 2.88 MB

english, 2018

2

Protein-Peptide Complex Prediction through Fragment Interaction Patterns

Verschueren, Erik, Vanhee, Peter, Rousseau, Frederic, Schymkowitz, Joost, Serrano, Luis

Journal:

Year:

2013

Language:

english

File:

PDF, 1.17 MB

english, 2013

3

Brominated phenols as auxin-like molecules

Stijn Spaepen, Joost Van Durme, Frederik Das, Sebastian Maurer-Stroh, Frederic Rousseau, Joost Schymkowitz, Jos Vanderleyden

Journal:

European Journal of Soil Biology

Year:

2009

Language:

english

File:

PDF, 354 KB

english, 2009

4

Analysis of the transthyretin-like (TTL) gene family in Ostertagia ostertagi – Comparison with other strongylid nematodes and Caenorhabditis elegans

H. Saverwyns, A. Visser, J. Van Durme, D. Power, I. Morgado, M.W. Kennedy, D.P. Knox, J. Schymkowitz, F. Rousseau, K. Gevaert, J. Vercruysse, E. Claerebout, P. Geldhof

Journal:

International Journal for Parasitology

Year:

2008

Language:

english

File:

PDF, 996 KB

english, 2008

5

Hybrid N-glycans on the host protective activation-associated secreted proteins of Ostertagia ostertagi and their importance in immunogenicity

Yves Meyvis, Nico Callewaert, Kris Gevaert, Evy Timmerman, Joost Van Durme, Joost Schymkowitz, Frederic Rousseau, Jozef Vercruysse, Edwin Claerebout, Peter Geldhof

Journal:

Molecular and Biochemical Parasitology

Year:

2008

Language:

english

File:

PDF, 612 KB

english, 2008

6

How Evolutionary Pressure Against Protein Aggregation Shaped Chaperone Specificity

Frederic Rousseau, Luis Serrano, Joost W.H. Schymkowitz

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 340 KB

english, 2006

7

Three-dimensional domain swapping in p13suc1 occurs in the unfolded state and is controlled by conserved proline residues

Rousseau, F., Schymkowitz, J. W. H., Wilkinson, H. R., Itzhaki, L. S.

Journal:

Proceedings of the National Academy of Sciences

Year:

2001

Language:

english

File:

PDF, 309 KB

english, 2001

8

Folding and Association of the Human Cell Cycle Regulatory Proteins ckshs1 and ckshs2 †

Seeliger, Markus A., Schymkowitz, Joost W. H., Rousseau, Frederic, Wilkinson, Hannah R., Itzhaki, Laura S.

Journal:

Year:

2002

Language:

english

File:

PDF, 345 KB

english, 2002

9

Proteome-wide Substrate Analysis Indicates Substrate Exclusion as a Mechanism to Generate Caspase-7 Versus Caspase-3 Specificity

Demon, D., Van Damme, P., Berghe, T. V., Deceuninck, A., Van Durme, J., Verspurten, J., Helsens, K., Impens, F., Wejda, M., Schymkowitz, J., Rousseau, F., Madder, A., Vandekerckhove, J., Declercq, W.,

Journal:

Molecular & Cellular Proteomics

Year:

2009

Language:

english

File:

PDF, 1.09 MB

english, 2009

10

Intermediates Control Domain Swapping during Folding of p13suc1

Rousseau, F., Schymkowitz, J. W. H., Wilkinson, H. R., Itzhaki, L. S.

Journal:

Journal of Biological Chemistry

Year:

2004

Language:

english

File:

PDF, 1005 KB

english, 2004

11

Structural Diversity of PDZ–Lipid Interactions

Rodrigo Gallardo, Ylva Ivarsson, Joost Schymkowitz, Frédéric Rousseau, Pascale Zimmermann

Journal:

Year:

2010

Language:

english

File:

PDF, 746 KB

english, 2010

12

Computational design of peptide ligands

Peter Vanhee, Almer M. van der Sloot, Erik Verschueren, Luis Serrano, Frederic Rousseau, Joost Schymkowitz

Journal:

Trends in Biotechnology

Year:

2011

Language:

english

File:

PDF, 894 KB

english, 2011

13

Genetic variability in the mitochondrial serine protease HTRA2 contributes to risk for Parkinson disease

Veerle Bogaerts, Karen Nuytemans, Joke Reumers, Philippe Pals, Sebastiaan Engelborghs, Barbara Pickut, Ellen Corsmit, Karin Peeters, Joost Schymkowitz, Peter Paul De Deyn, Patrick Cras, Frederic Rouss

Journal:

Year:

2008

Language:

english

File:

PDF, 331 KB

english, 2008

14

Stability and folding of the cell cycle regulatory protein, p13suc1

F. Rousseau, J.W.H. Schymkowitz, M. Sánchez del Pino, L.S. Itzhaki

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 447 KB

english, 1998

15

Prediction of water and metal binding sites and their affinities by using the Fold-X force field

Schymkowitz, J. W. H., Rousseau, F., Martins, I. C., Ferkinghoff-Borg, J., Stricher, F., Serrano, L.

Journal:

Proceedings of the National Academy of Sciences

Year:

2005

Language:

english

File:

PDF, 607 KB

english, 2005

16

SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs

Reumers, J., Maurer-Stroh, S., Schymkowitz, J., Rousseau, F.

Journal:

Year:

2006

Language:

english

File:

PDF, 61 KB

english, 2006

17

Frizzled 7 and PIP2 binding by syntenin PDZ2 domain supports Frizzled 7 trafficking and signalling

Egea-Jimenez, Antonio Luis, Gallardo, Rodrigo, Garcia-Pino, Abel, Ivarsson, Ylva, Wawrzyniak, Anna Maria, Kashyap, Rudra, Loris, Remy, Schymkowitz, Joost, Rousseau, Frederic, Zimmermann, Pascale

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 2.18 MB

english, 2016

18

PepX: a structural database of non-redundant protein-peptide complexes

Vanhee, P., Reumers, J., Stricher, F., Baeten, L., Serrano, L., Schymkowitz, J., Rousseau, F.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 6.07 MB

english, 2010

19

An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins

De Baets, Greet, Reumers, Joke, Delgado Blanco, Javier, Dopazo, Joaquin, Schymkowitz, Joost, Rousseau, Frederic, Sanchez-Ruiz, Jose M.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 503 KB

english, 2011

20

Surfing on protein folding energy landscapes

Schymkowitz, J. W. H., Rousseau, F., Serrano, L.

Journal:

Proceedings of the National Academy of Sciences

Year:

2002

Language:

english

File:

PDF, 143 KB

english, 2002

21

10.1038/nsb1001-888

Schymkowitz, Joost W.H., Rousseau, Frederic, Wilkinson, Hannah R., Friedler, Assaf, Itzhaki, Laura S.

Journal:

Natural Structural Biology

Year:

2001

Language:

english

File:

PDF, 703 KB

english, 2001

22

Protein-Peptide Interactions Adopt the Same Structural Motifs as Monomeric Protein Folds

Peter Vanhee, Francois Stricher, Lies Baeten, Erik Verschueren, Tom Lenaerts, Luis Serrano, Frederic Rousseau, Joost Schymkowitz

Journal:

Year:

2009

Language:

english

File:

PDF, 1001 KB

english, 2009

23

Drying mode and hydrothermal treatment conditions govern the formation of amyloid-like protein fibrils in solutions of dried hen egg white

Monge-Morera, Margarita, Lambrecht, Marlies A., Deleu, Lomme J., Godefroidt, Thibault, Goos, Peter, Rousseau, Frederic, Schymkowitz, Joost, Delcour, Jan A.

Journal:

Food Hydrocolloids

Year:

2021

File:

PDF, 17.07 MB

2021

24

Selectivity of Aggregation-Determining Interactions

Ganesan, Ashok, Debulpaep, Maja, Wilkinson, Hannah, Van Durme, Joost, De Baets, Greet, Jonckheere, Wim, Ramakers, Meine, Ivarsson, Ylva, Zimmermann, Pascale, Van Eldere, Johan, Schymkowitz, Joost, Rou

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 869 KB

english, 2015

25

TRANSCELLULAR SPREADING OF TAU IN TAUOPATHIES

Demaegd, Koen, Schymkowitz, Joost, Rousseau, Frederic

Journal:

Year:

2018

Language:

english

File:

PDF, 1.55 MB

english, 2018

26

ChemInform Abstract: Structural Diversity of PDZ—Lipid Interactions

Rodrigo Gallardo, Ylva Ivarsson, Joost Schymkowitz, Frederic Rousseau, Pascale Zimmermann

Journal:

Year:

2010

File:

PDF, 15 KB

2010

27

A Comparative Study of the Relationship Between Protein Structure and β-Aggregation in Globular and Intrinsically Disordered Proteins

Rune Linding, Joost Schymkowitz, Frederic Rousseau, Francesca Diella, Luis Serrano

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 245 KB

english, 2004

28

Increased Monomerization of Mutant HSPB1 Leads to Protein Hyperactivity in Charcot-Marie-Tooth Neuropathy

Almeida-Souza, L., Goethals, S., de Winter, V., Dierick, I., Gallardo, R., Van Durme, J., Irobi, J., Gettemans, J., Rousseau, F., Schymkowitz, J., Timmerman, V., Janssens, S.

Journal:

Journal of Biological Chemistry

Year:

2010

Language:

english

File:

PDF, 3.19 MB

english, 2010

29

Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm

Sánchez, Ignacio E., Beltrao, Pedro, Stricher, Francois, Schymkowitz, Joost, Ferkinghoff-Borg, Jesper, Rousseau, Frederic, Serrano, Luis, Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 424 KB

english, 2008

30

Rational Design of Amyloid-Like Fibrillary Structures for Tailoring Food Protein Techno-Functionality and Their Potential Health Implications

Jansens, Koen J.A., Rombouts, Ine, Grootaert, Charlotte, Brijs, Kristof, Van Camp, John, Van der Meeren, Paul, Rousseau, Frederic, Schymkowitz, Joost, Delcour, Jan A.

Journal:

Comprehensive Reviews in Food Science and Food Safety

Year:

2018

Language:

english

File:

PDF, 1005 KB

english, 2018

31

Entropic Bristles Tune the Seeding Efficiency of Prion-Nucleating Fragments

Michiels, Emiel, Liu, Shu, Gallardo, Rodrigo, Louros, Nikolaos, MatheliÃ©-Guinlet, Marion, DufrÃªne, Yves, Schymkowitz, Joost, Vorberg, Ina, Rousseau, Frederic

Journal:

Year:

2020

Language:

english

File:

PDF, 4.70 MB

english, 2020

32

Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins

Fernandez-Escamilla, Ana-Maria, Rousseau, Frederic, Schymkowitz, Joost, Serrano, Luis

Journal:

Nature Biotechnology

Year:

2004

Language:

english

File:

PDF, 236 KB

english, 2004

33

A systems biology perspective on protein structural dynamics and signal transduction

Frederic Rousseau, Joost Schymkowitz

Journal:

Current Opinion in Structural Biology

Year:

2005

Language:

english

File:

PDF, 261 KB

english, 2005

34

WALTZ-DB: a benchmark database of amyloidogenic hexapeptides

Beerten, J., Van Durme, J., Gallardo, R., Capriotti, E., Serpell, L., Rousseau, F., Schymkowitz, J.

Journal:

Year:

2015

Language:

english

File:

PDF, 76 KB

english, 2015

35

WALTZ-DB 2.0: an updated database containing structural information of experimentally determined amyloid-forming peptides

Louros, Nikolaos, Konstantoulea, Katerina, De Vleeschouwer, Matthias, Ramakers, Meine, Schymkowitz, Joost, Rousseau, Frederic

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 722 KB

english, 2019

36

WALTZ-DB 2.0: an updated database containing structural information of experimentally determined amyloid-forming peptides

Louros, Nikolaos, Konstantoulea, Katerina, De Vleeschouwer, Matthias, Ramakers, Meine, Schymkowitz, Joost, Rousseau, Frederic

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 722 KB

2019

37

Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations

Joke Reumers, Joost Schymkowitz, Fréderic Rousseau

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 251 KB

english, 2009

38

Protein aggregation in bacteria: the thin boundary between functionality and toxicity

Bednarska, N. G., Schymkowitz, J., Rousseau, F., Van Eldere, J.

Journal:

Microbiology (Society for General Microbiology)

Year:

2013

Language:

english

File:

PDF, 387 KB

english, 2013

39

A Genome-Wide Sequence–Structure Analysis Suggests Aggregation Gatekeepers Constitute an Evolutionary Constrained Functional Class

De Baets, Greet, Van Durme, Joost, Rousseau, Frederic, Schymkowitz, Joost

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 529 KB

english, 2014

40

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants

De Baets, G., Van Durme, J., Reumers, J., Maurer-Stroh, S., Vanhee, P., Dopazo, J., Schymkowitz, J., Rousseau, F.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 289 KB

english, 2012

41

Structural Basis for Increased Toxicity of Pathological Aβ 42 :Aβ 40 Ratios in Alzheimer Disease

Pauwels, Kris, Williams, Thomas L., Morris, Kyle L., Jonckheere, Wim, Vandersteen, Annelies, Kelly, Geoff, Schymkowitz, Joost, Rousseau, Frederic, Pastore, Annalisa, Serpell, Louise C., Broersen, Kere

Journal:

Journal of Biological Chemistry

Year:

2012

Language:

english

File:

PDF, 2.82 MB

english, 2012

42

Adaption of human antibody λ and κ light chain architectures to CDR repertoires

van der Kant, Rob, Bauer, Joschka, Karow-Zwick, Anne R, Kube, Sebastian, Garidel, Patrick, Blech, Michaela, Rousseau, Frederic, Schymkowitz, Joost

Journal:

Protein Engineering Design and Selection

Year:

2019

Language:

english

File:

PDF, 7.82 MB

english, 2019

43

Sequence conservation provides the best prediction of the role of proline residues in p13suc1

J.W.H Schymkowitz, F Rousseau, L.S itzhaki

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 208 KB

english, 2000

44

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases

Reumers, J., Conde, L., Medina, I., Maurer-Stroh, S., Van Durme, J., Dopazo, J., Rousseau, F., Schymkowitz, J.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 1.53 MB

english, 2007

45

Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data

Van Durme, Joost, Maurer-Stroh, Sebastian, Gallardo, Rodrigo, Wilkinson, Hannah, Rousseau, Frederic, Schymkowitz, Joost, Tramontano, Anna

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 604 KB

english, 2009

46

Comprehensive subcellular topologies of polypeptides in Streptomyces

Tsolis, Konstantinos C., Tsare, Evridiki-Pandora, Orfanoudaki, Georgia, Busche, Tobias, Kanaki, Katerina, Ramakrishnan, Reshmi, Rousseau, Frederic, Schymkowitz, Joost, Rückert, Christian, Kalinowski,

Journal:

Microbial Cell Factories

Year:

2018

Language:

english

File:

PDF, 1.48 MB

english, 2018

47

Protein sequences encode safeguards against aggregation

Joke Reumers, Sebastian Maurer-Stroh, Joost Schymkowitz, Fréderic Rousseau

Journal:

Year:

2009

Language:

english

File:

PDF, 292 KB

english, 2009

48

Recognizing and Defining True Ras Binding Domains II: In Silico Prediction Based on Homology Modelling and Energy Calculations

Christina Kiel, Sabine Wohlgemuth, Frederic Rousseau, Joost Schymkowitz, Jesper Ferkinghoff-Borg, Fred Wittinghofer, Luis Serrano

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 778 KB

english, 2005

49

Genetic variability in progranulin contributes to risk for clinically diagnosed Alzheimer disease

Brouwers, N., Sleegers, K., Engelborghs, S., Maurer-Stroh, S., Gijselinck, I., van der Zee, J., Pickut, B. A., Van den Broeck, M., Mattheijssens, M., Peeters, K., Schymkowitz, J., Rousseau, F., Martin

Journal:

Year:

2008

Language:

english

File:

PDF, 556 KB

english, 2008

50

A graphical interface for the FoldX forcefield

Van Durme, J., Delgado, J., Stricher, F., Serrano, L., Schymkowitz, J., Rousseau, F.

Journal:

Year:

2011

Language:

english

File:

PDF, 150 KB

english, 2011

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