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51

HORI: a web server to compute Higher Order Residue Interactions in protein structures

Pandurangan Sundaramurthy, Khader Shameer, Raashi Sreenivasan, Sunita Gakkhar, Ramanathan Sowdhamini

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 567 KB

english, 2010

52

PURE: A webserver for the prediction of domains in unassigned regions in proteins

Chilamakuri CS Reddy, Khader Shameer, Bernard O Offmann, Ramanathan Sowdhamini

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.28 MB

english, 2008

53

[IEEE 2011 IEEE GCC Conference and Exhibition (GCC) - Dubai, United Arab Emirates (2011.02.19-2011.02.22)] 2011 IEEE GCC Conference and Exhibition (GCC) - K-rated transformers and active power filter for harmonic conditioning in industrial and commercial applications

Koya, Shameer A, Khan, Mustajab Ahmed

Year:

2011

Language:

english

File:

PDF, 505 KB

english, 2011

54

Value of Coronary Computed Tomography as a Prognostic Tool

Tahmeed Contractor, Maansi Parekh, Shameer Ahmed, Matthew W. Martinez

Journal:

Clinical Cardiology

Year:

2012

Language:

english

File:

PDF, 339 KB

english, 2012

55

Genetic Loci Implicated in Erythroid Differentiation and Cell Cycle Regulation Are Associated With Red Blood Cell Traits

Keyue Ding, Khader Shameer, Hayan Jouni, Daniel R. Masys, Gail P. Jarvik, Abel N. Kho, Marylyn D. Ritchie, Catherine A. McCarty, Christopher G. Chute, Teri A. Manolio, Iftikhar J. Kullo

Journal:

Mayo Clinic Proceedings

Year:

2012

Language:

english

File:

PDF, 1.53 MB

english, 2012

56

Comparative analyses of stress-responsive genes in Arabidopsis thaliana: insight from genomic data mining, functional enrichment, pathway analysis and phenomics

Naika, Mahantesha, Shameer, Khader, Sowdhamini, Ramanathan

Journal:

Molecular BioSystems

Year:

2013

Language:

english

File:

PDF, 23.94 MB

english, 2013

57

[IEEE 2013 IEEE Conference on Information & Communication Technologies (ICT) - Thuckalay, Tamil Nadu, India (2013.04.11-2013.04.12)] 2013 IEEE CONFERENCE ON INFORMATION AND COMMUNICATION TECHNOLOGIES - ECG beat classification using wavelets and SVM

Faziludeen, Shameer, Sabiq, P. V.

Year:

2013

Language:

english

File:

PDF, 261 KB

english, 2013

58

Gene expression profiling of peripheral blood mononuclear cells in the setting of peripheral arterial disease

Rizwan Masud, Khader Shameer, Aparna Dhar, Keyue Ding…

Journal:

Journal of Clinical Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.30 MB

english, 2012

59

Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome

Khader Shameer, Ramanathan Sowdhamini

Journal:

Journal of Clinical Bioinformatics

Year:

2012

Language:

english

File:

PDF, 820 KB

english, 2012

60

A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects

Shameer, Khader, Denny, Joshua C., Ding, Keyue, Jouni, Hayan, Crosslin, David R., Andrade, Mariza, Chute, Christopher G., Peissig, Peggy, Pacheco, Jennifer A., Li, Rongling, Bastarache, Lisa, Kho, Abe

Journal:

Year:

2014

Language:

english

File:

PDF, 769 KB

english, 2014

61

A Biophysically Based Finite-State Machine Model for Analyzing Gastric Experimental Entrainment and Pacing Recordings

Sathar, Shameer, Trew, Mark L., Du, Peng, O’Grady, Greg, Cheng, Leo K.

Journal:

Annals of Biomedical Engineering

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

62

Understanding Protein–Nanoparticle Interaction: A New Gateway to Disease Therapeutics

Giri, Karuna, Shameer, Khader, Zimmermann, Michael T., Saha, Sounik, Chakraborty, Prabir K., Sharma, Anirudh, Arvizo, Rochelle R., Madden, Benjamin J., Mccormick, Daniel J., Kocher, Jean-Pierre A., Bh

Journal:

Bioconjugate Chemistry

Year:

2014

Language:

english

File:

PDF, 728 KB

english, 2014

63

Gastrointestinal Tuberculosis: An Unusual Presentation

Shah, Shameer, Fickling, William, Apps, Michael

Journal:

Clinical Gastroenterology and Hepatology

Year:

2007

Language:

english

File:

PDF, 318 KB

english, 2007

64

Mo1302 Incidental Diagnosis of Inflammatory Bowel Disease in a British Bowel Cancer Screening Cohort: A Multi-Centre Study

Butcher, Rhys O., Mehta, Shameer J., Ahmad, Omer F., Boyd, Catriona A., Anand, Rakesh L., Stein, Judith, Abbasi, Atta M., George, Regi, Prudham, Roger C., Vega, Roser, McCartney, Sara, Bloom, Stuart L

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 446 KB

english, 2013

65

ASSOCIATION OF A POLYMORPHISM IN SLCO1B1 WITH STATIN-INDUCED MYALGIAS, MYOSITIS AND MYOPATHY: AN ELECTRONIC MEDICAL RECORD BASED PHARMACOGENETIC STUDY

Khan, Adnan A., Ding, Keyue, Khader, Shameer, Kullo, Iftikhar J.

Journal:

Journal of the American College of Cardiology

Year:

2011

Language:

english

File:

PDF, 260 KB

english, 2011

66

A NOVEL GENOMIC SUSCEPTIBILITY LOCUS FOR PERIPHERAL ARTERIAL DISEASE ON CHROMOSOME 12

Kullo, Iftikhar J., Khader, Shameer, Jouni, Hayan, Lesnick, Timothy G., Pathak, Jyotishman, Chute, Christopher, de Andrade, Mariza

Journal:

Journal of the American College of Cardiology

Year:

2014

Language:

english

File:

PDF, 191 KB

english, 2014

67

Developmental Changes in Postnatal Murine Intestinal Interstitial Cell of Cajal Network Structure and Function

Gao, Jerry, Sathar, Shameer, O’Grady, Gregory, Han, Juan, Cheng, Leo K.

Journal:

Annals of Biomedical Engineering

Year:

2014

Language:

english

File:

PDF, 3.38 MB

english, 2014

68

Surface 12 lead electrocardiogram recordings using smart phone technology

Baquero, Giselle A., Banchs, Javier E., Ahmed, Shameer, Naccarelli, Gerald V., Luck, Jerry C.

Journal:

Journal of Electrocardiology

Year:

2015

Language:

english

File:

PDF, 3.55 MB

english, 2015

69

STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice

Naika, M., Shameer, K., Mathew, O. K., Gowda, R., Sowdhamini, R.

Journal:

Plant and Cell Physiology

Year:

2013

Language:

english

File:

PDF, 1.21 MB

english, 2013

70

[IEEE 2010 International Conference on Science and Social Research (CSSR) - Kuala Lumpur, Malaysia (2010.12.5-2010.12.7)] 2010 International Conference on Science and Social Research (CSSR 2010) - Innovation capacity in higher education

Mohamad Ezrien Bin Mohamad Kamal,, Ahmad Shameer Bin Mohamed Thaher,, Othman, Radiah

Year:

2010

Language:

english

File:

PDF, 365 KB

english, 2010

71

TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei

Shameer, S., Logan-Klumpler, F. J., Vinson, F., Cottret, L., Merlet, B., Achcar, F., Boshart, M., Berriman, M., Breitling, R., Bringaud, F., Butikofer, P., Cattanach, A. M., Bannerman-Chukualim, B., C

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.05 MB

english, 2015

72

[IEEE 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Orlando, FL, USA (2011.02.3-2011.02.5)] 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Poster: HORIBALFRE: Higher Order Residue Interactions Based ALgorithm for Fold REcognition

Sundaramurthy, Pandurangan, Sreenivasan, Raashi, Shameer, Khader, Gakkhar, Sunita, Sowdhamini, Ramanathan

Year:

2011

Language:

english

File:

PDF, 145 KB

english, 2011

73

[IEEE 2010 IEEE International Conference on Data Mining Workshops (ICDMW) - Sydney, TBD, Australia (2010.12.13-2010.12.13)] 2010 IEEE International Conference on Data Mining Workshops - A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families

Gowri, V.S., Shameer, Khader, Reddy, Chilamakuri Chandra Sekhar, Shingate, Prashant, Sowdhamini, Ramanathan

Year:

2010

Language:

english

File:

PDF, 504 KB

english, 2010

74

ASSAY OF MALT β-GLUCANASE USING AZO-BARLEY GLUCAN: AN IMPROVED PRECIPITANT

McCleary, Barry V., Shameer, Ida

Journal:

Journal of the Institute of Brewing

Year:

1987

Language:

english

File:

PDF, 352 KB

english, 1987

75

Defects in the adherens junction complex (E-cadherin/ β-catenin) in inflammatory bowel disease

Mehta, Shameer, Nijhuis, Anke, Kumagai, Tomoko, Lindsay, James, Silver, Andrew

Journal:

Cell and Tissue Research

Year:

2015

Language:

english

File:

PDF, 748 KB

english, 2015

76

Whole Exome Sequencing Implicates an INO80D Mutation in a Syndrome of Aortic Hypoplasia, Premature Atherosclerosis, and Arterial Stiffness

Shameer, K., Klee, E. W., Dalenberg, A. K., Kullo, I. J.

Journal:

Circulation Cardiovascular Genetics

Year:

2014

Language:

english

File:

PDF, 2.44 MB

english, 2014

77

NON-SEQUENTIAL INSTRUCTION CACHE PREFETCHING FOR MULTIPLE–ISSUE PROCESSORS

VEIDENBAUM, ALEXANDER V., ZHAO, QINGBO, SHAMEER, ABDUHL

Journal:

International Journal of High Speed Computing

Year:

1999

Language:

english

File:

PDF, 344 KB

english, 1999

78

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (4 – 8 January 2015)] Biocomputing 2015 - AN INTEGRATIVE PIPELINE FOR MULTI-MODAL DISCOVERY OF DISEASE RELATIONSHIPS

GLICKSBERG, BENJAMIN S., LI, LI, CHENG, WEI-YI, SHAMEER, KHADER, HAKENBERG, JÖRG, CASTELLANOS, RAFAEL, MA, MENG, SHI, LISONG, SHAH, HARDIK, DUDLEY, JOEL T., CHEN, RONG

Language:

english

File:

PDF, 1.09 MB

english

79

Cardiomyopathy and Worsened Ischemic Heart Failure in SM22- Cre-Mediated Neuropilin-1 Null Mice: Dysregulation of PGC1 and Mitochondrial Homeostasis

Wang, Y., Cao, Y., Yamada, S., Thirunavukkarasu, M., Nin, V., Joshi, M., Rishi, M. T., Bhattacharya, S., Camacho-Pereira, J., Sharma, A. K., Shameer, K., Kocher, J.-P. A., Sanchez, J. A., Wang, E., Ho

Journal:

Arteriosclerosis Thrombosis and Vascular Biology

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

80

The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data

Tang, X., Baheti, S., Shameer, K., Thompson, K. J., Wills, Q., Niu, N., Holcomb, I. N., Boutet, S. C., Ramakrishnan, R., Kachergus, J. M., Kocher, J.-P. A., Weinshilboum, R. M., Wang, L., Thompson, E.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

81

Agreement between diurnal variations of intraocular pressure by Tono-Pen and Goldmann applanation tonometer in patients on topical anti-glaucoma medication

Gupta, Shikha, Sinha, Gautam, Sharma, Reetika, Nayak, Bhagabat, Patil, Bharat, Kashyap, Bibhuti, Shameer, Abdul, Dada, Tanuj

Journal:

International Ophthalmology

Year:

2016

Language:

english

File:

PDF, 605 KB

english, 2016

82

Lantana camara leaf extract mediated silver nanoparticles: Antibacterial, green catalyst

Ajitha, B., Ashok Kumar Reddy, Y., Shameer, Syed, Rajesh, K.M., Suneetha, Y., Sreedhara Reddy, P.

Journal:

Journal of Photochemistry and Photobiology B: Biology

Year:

2015

Language:

english

File:

PDF, 4.56 MB

english, 2015

83

A Stochastic Algorithm for Generating Realistic Virtual Interstitial Cell of Cajal Networks

Gao, Jerry, Sathar, Shameer, OGrady, Gregory, Archer, Rosalind, Cheng, Leo K.

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2015

Language:

english

File:

PDF, 887 KB

english, 2015

84

BioStar: An Online Question & Answer Resource for the Bioinformatics Community

Parnell, Laurence D., Lindenbaum, Pierre, Shameer, Khader, Dall'Olio, Giovanni Marco, Swan, Daniel C., Jensen, Lars Juhl, Cockell, Simon J., Pedersen, Brent S., Mangan, Mary E., Miller, Christopher A.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 2.06 MB

english, 2011

85

The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study

Kullo, Iftikhar J., Shameer, Khader, Jouni, Hayan, Lesnick, Timothy G., Pathak, Jyotishman, Chute, Christopher G., de Andrade, Mariza

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 2.31 MB

english, 2014

86

Ten Simple Rules for Getting Help from Online Scientific Communities

Dall'Olio, Giovanni M., Marino, Jacopo, Schubert, Michael, Keys, Kevin L., Stefan, Melanie I., Gillespie, Colin S., Poulain, Pierre, Shameer, Khader, Sugar, Robert, Invergo, Brandon M., Jensen, Lars J

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 74 KB

english, 2011

87

STIFDB— Arabidopsis Stress Responsive Transcription Factor DataBase

Shameer, K., Ambika, S., Varghese, Susan Mary, Karaba, N., Udayakumar, M., Sowdhamini, R.

Journal:

International Journal of Plant Genomics

Year:

2009

Language:

english

File:

PDF, 3.13 MB

english, 2009

88

A Multiscale Tridomain Model for Simulating Bioelectric Gastric Pacing

Sathar, Shameer, Trew, Mark, O Grady, Greg, Cheng, Leo

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2015

Language:

english

File:

PDF, 8.40 MB

english, 2015

89

172 Computational analysis and prediction of proteins that undergo domain swapping

Shingate, Prashant, Upadhyay, Atul, Khader, Shameer, Sowdhamini, Ramanathan

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 572 KB

english, 2015

90

Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment

Shameer, Khader, Tripathi, Lokesh P., Kalari, Krishna R., Dudley, Joel T., Sowdhamini, Ramanathan

Journal:

Briefings in Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.46 MB

english, 2015

91

Simultaneous determination of multi-class bioactive constituents for quality assessment of Garcinia species using UHPLC–QqQLIT–MS/MS

Pandey, Renu, Chandra, Preeti, Kumar, Brijesh, Srivastva, Mukesh, Anu Aravind, A.P., Shameer, P.S., Rameshkumar, K.B.

Journal:

Industrial Crops and Products

Year:

2015

Language:

english

File:

PDF, 2.51 MB

english, 2015

92

Combining Printing, Coating, and Vacuum Deposition on the Roll-to-Roll Scale: A Hybrid Organic Photovoltaics Fabrication

Griffith, Matthew J., Cooling, Nathan A., Vaughan, Ben, Elkington, Daniel C., Hart, Andrew S., Lyons, Acadia G., Quereshi, Shameer, Belcher, Warwick J., Dastoor, Paul C.

Journal:

IEEE Journal of Selected Topics in Quantum Electronics

Year:

2016

Language:

english

File:

PDF, 3.25 MB

english, 2016

93

HARMONY: a server for the assessment of protein structures

Pugalenthi, G., Shameer, K., Srinivasan, N., Sowdhamini, R.

Journal:

Nucleic Acids Research

Year:

2006

Language:

english

File:

PDF, 1.59 MB

english, 2006

94

On limited nuclear war in the 21st century

Journal:

Defence Studies

Year:

2015

Language:

english

File:

PDF, 292 KB

english, 2015

95

Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams

Shameer, Khader, Badgeley, Marcus A., Miotto, Riccardo, Glicksberg, Benjamin S., Morgan, Joseph W., Dudley, Joel T.

Journal:

Briefings in Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1017 KB

english, 2016

96

Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses

Barah, Pankaj, B N, Mahantesha Naika, Jayavelu, Naresh Doni, Sowdhamini, Ramanathan, Shameer, Khader, Bones, Atle M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 5.70 MB

english, 2015

97

High-throughput collagen fingerprinting of intact microfaunal remains; a low-cost method for distinguishing between murine rodent bones

Buckley, Mike, Gu, Muxin, Shameer, Sanu, Patel, Soyab, Chamberlain, Andrew T.

Journal:

Rapid Communications in Mass Spectrometry

Year:

2016

Language:

english

File:

PDF, 980 KB

english, 2016

98

[IEEE 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Milan (2015.8.25-2015.8.29)] 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - A comparison of solver performance for complex gastric electrophysiology models

Sathar, Shameer, Cheng, Leo K., Trew, Mark L.

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

99

Modelling PN4 classification among Malaysian listed companies

Smith, Malcolm, Ahmar Ahmad, Syahrul, Shameer Mohamed, Ahmad

Journal:

Asian Review of Accounting

Year:

2004

Language:

english

File:

PDF, 812 KB

english, 2004

100

Sa1684 Quantification of the Anisotropic Ratio of Gastric Tissue Conductivities: Methods and Application

Du, Peng, Paskaranandavadivel, Niranchan, Sathar, Shameer, Angeli, Timothy R., O'Grady, Gregory, Cheng, Leo K.

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 383 KB

english, 2016