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1

FastSIR algorithm: A fast algorithm for the simulation of the epidemic spread in large networks by using the susceptible–infected–recovered compartment model

Antulov-Fantulin, Nino, Lančić, Alen, Štefančić, Hrvoje, Šikić, Mile

Journal:

Information Sciences

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

2

SIFT missense predictions for genomes

Vaser, Robert, Adusumalli, Swarnaseetha, Leng, Sim Ngak, Sikic, Mile, Ng, Pauline C

Journal:

Nature Protocols

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

3

Horizontal silicon nanowires for surface-enhanced Raman spectroscopy

Gebavi, Hrvoje, Ristić, Davor, Baran, Nikola, Mikac, Lara, Mohaček-Grošev, Vlasta, Gotić, Marijan, Šikić, Mile, Ivanda, Mile

Journal:

Materials Research Express

Year:

2018

Language:

english

File:

PDF, 2.33 MB

english, 2018

4

[IEEE 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA) - Dubrovnik, Croatia (2019.9.23-2019.9.25)] 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA) - Yet another de novo genome assembler

Vaser, Robert, Sikic, Mile

Year:

2019

Language:

english

File:

PDF, 347 KB

english, 2019

5

Phase diagram of epidemic spreading — unimodal vs. bimodal probability distributions

Alen Lančić, Nino Antulov-Fantulin, Mile Šikić, Hrvoje Štefančić

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2011

Language:

english

File:

PDF, 1.84 MB

english, 2011

6

PSAIA – Protein Structure and Interaction Analyzer

Josip Mihel, Mile Šikić, Sanja Tomić, Branko Jeren, Kristian Vlahoviček

Journal:

BMC Structural Biology

Year:

2008

Language:

english

File:

PDF, 1.29 MB

english, 2008

7

Large-Scale Functional Organization of Long-Range Chromatin Interaction Networks

Kuljeet Singh Sandhu, Guoliang Li, Huay Mei Poh, Yu Ling Kelly Quek, Yee Yen Sia, Su Qin Peh, Fabianus Hendriyan Mulawadi, Joanne Lim, Mile Sikic, Francesca Menghi, Anbupalam Thalamuthu, Wing Kin Sung

Journal:

Year:

2012

Language:

english

File:

PDF, 1.78 MB

english, 2012

8

[IEEE 2008 30th International Conference on Information Technology Interfaces (ITI) - Cavtat/Dubrovnik, Croatia (2008.06.23-2008.06.26)] ITI 2008 - 30th International Conference on Information Technology Interfaces - Comparison of the RADIUS and Diameter protocols

Stanke, Mladen, Sikic, Mile

Year:

2008

Language:

english

File:

PDF, 186 KB

english, 2008

9

Epidemic centrality — is there an underestimated epidemic impact of network peripheral nodes?

Šikić, Mile, Lančić, Alen, Antulov-Fantulin, Nino, Štefančić, Hrvoje

Journal:

The European Physical Journal B / Condensed Matter and Complex Systems

Year:

2013

Language:

english

File:

PDF, 898 KB

english, 2013

10

Identification of Patient Zero in Static and Temporal Networks: Robustness and Limitations

Antulov-Fantulin, Nino, Lančić, Alen, Šmuc, Tomislav, Štefančić, Hrvoje, Šikić, Mile

Journal:

Physical Review Letters

Year:

2015

Language:

english

File:

PDF, 899 KB

english, 2015

11

Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests

Šikić, Mile, Tomić, Sanja, Vlahoviček, Kristian, Stormo, Gary D.

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 292 KB

english, 2009

12

[IEEE 2014 IEEE Conference on Self-Adaptive and Self-Organizing Systems Workshops (SASOW) - Imperial College, London, United Kingdom (2014.9.8-2014.9.12)] 2014 IEEE Eighth International Conference on Self-Adaptive and Self-Organizing Systems Workshops - Statistical Inference Framework for Source Detection of Contagion Processes on Arbitrary Network Structures

Antulov-Fantulin, Nino, Lancic, Alen, Stefancic, Hrvoje, Sikic, Mile, Smuc, Tomislav

Year:

2014

Language:

english

File:

PDF, 690 KB

english, 2014

13

[IEEE 2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA) - Zagreb, Croatia (2015.9.7-2015.9.9)] 2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA) - Some new results on assessment of Q-gram filter efficiency

Novak, Andrej, Krizanovic, Kresimir, Lancic, Alen, Sikic, Mile

Year:

2015

Language:

english

File:

PDF, 255 KB

english, 2015

14

Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads

Sović, Ivan, Križanović, Krešimir, Skala, Karolj, Šikić, Mile

Journal:

Year:

2016

Language:

english

File:

PDF, 293 KB

english, 2016

15

Fast and accurate de novo genome assembly from long uncorrected reads

Vaser, Robert, Sović, Ivan, Nagarajan, Niranjan, Šikić, Mile

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

16

Fast and sensitive mapping of nanopore sequencing reads with GraphMap

Sović, Ivan, Šikić, Mile, Wilm, Andreas, Fenlon, Shannon Nicole, Chen, Swaine, Nagarajan, Niranjan

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.83 MB

english, 2016

17

Evaluation of tools for long read RNA-seq splice-aware alignment

Križanović, Krešimir, Echchiki, Amina, Roux, Julien, Šikić, Mile

Journal:

Year:

2017

Language:

english

File:

PDF, 504 KB

english, 2017

18

[ACM Press the 2017 International Conference - Newark, NJ, USA (2017.10.18-2017.10.20)] Proceedings of the 2017 International Conference on Computational Biology and Bioinformatics - ICCBB 2017 - Unsupervised Learning of Sequencing Read Types

Tomljanović, Jan, Šebrek, Tomislav, Šikić, Mile

Year:

2017

Language:

english

File:

PDF, 10.06 MB

english, 2017

19

Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance

Šošić, Martin, Šikić, Mile

Journal:

Year:

2017

Language:

english

File:

PDF, 84 KB

english, 2017

20

SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

Korpar, Matija, Šošić, Martin, Blažeka, Dino, Šikić, Mile, Fernandez-Fuentes, Narcis

Journal:

Year:

2015

Language:

english

File:

PDF, 1.11 MB

english, 2015

21

A safety, tolerability, and pharmacokinetic analysis of two phase I studies of multitargeted small molecule tyrosine kinase inhibitor XL647 with an intermittent and continuous dosing schedule in patients with advanced solid malignancies

Das, Millie, Padda, Sukhmani K., Frymoyer, Adam, Molina, Julian, Adjei, Alex, Lensing, Janet L., Miles, Dale, Sikic, Branimir I., Wakelee, Heather A.

Journal:

Cancer Chemotherapy and Pharmacology

Year:

2018

Language:

english

File:

PDF, 1.08 MB

english, 2018

22

Silicon Nanowires Substrates Fabrication for Ultra-Sensitive Surface Enhanced Raman Spectroscopy Sensors

Gebavi, Hrvoje, Mikac, Lara, Marciuš, Marijan, Šikic, Mile, Mohaček-Grošev, Vlasta, Janči, Tibor, Vidaćek, Sanja, Hasanspahić, Emina, Omanović Miklićanin, Enisa, Ivanda, Mile

Journal:

Croatica Chemica Acta

Year:

2017

File:

PDF, 4.05 MB

2017

23

Silicon Nanowires Substrates Fabrication for Ultra-Sensitive Surface Enhanced Raman Spectroscopy Sensors

Gebavi, Hrvoje, Mikac, Lara, Marciuš, Marijan, Šikic, Mile, Mohaček-Grošev, Vlasta, Janči, Tibor, Vidaćek, Sanja, Hasanspahić, Emina, Omanović Miklićanin, Enisa, Ivanda, Mile

Journal:

Croatica Chemica Acta

Year:

2017

Language:

english

File:

PDF, 4.05 MB

english, 2017

24

Disentangling Sources of Influence in Online Social Networks

Piskorec, Matija, Smuc, Tomislav, Sikic, Mile

Journal:

Year:

2019

Language:

english

File:

PDF, 1.40 MB

english, 2019

25

[IEEE 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA) - Dubrovnik, Croatia (2019.9.23-2019.9.25)] 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA) - Yet another de novo genome assembler

Vaser, Robert, Sikic, Mile

Year:

2019

File:

PDF, 347 KB

2019