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51

Allosteric regulation of phosphofructokinase controls the emergence of glycolytic oscillations in isolated yeast cells

Gustavsson, Anna-Karin, van Niekerk, David D., Adiels, Caroline B., Kooi, Bob, Goksör, Mattias, Snoep, Jacky L.

Journal:

Year:

2014

Language:

english

File:

PDF, 630 KB

english, 2014

52

Intermediate instability at high temperature leads to low pathway efficiency for an in vitro reconstituted system of gluconeogenesis in Sulfolobus solfataricus

Kouril, Theresa, Esser, Dominik, Kort, Julia, Westerhoff, Hans V., Siebers, Bettina, Snoep, Jacky L.

Journal:

Year:

2013

Language:

english

File:

PDF, 567 KB

english, 2013

53

Construction and validation of a detailed kinetic model of glycolysis in Plasmodium falciparum

Penkler, Gerald, du Toit, Francois, Adams, Waldo, Rautenbach, Marina, Palm, Daniel C., van Niekerk, David D., Snoep, Jacky L.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.68 MB

english, 2015

54

SupraBiology 2014: Promoting UK-China collaboration on Systems Biology and High Performance Computing

Murabito, Ettore, Colombo, Riccardo, Wu, Chengkun, Verma, Malkhey, Rehman, Samrina, Snoep, Jacky, Peng, Shao-Liang, Guan, Naiyang, Liao, Xiangke, Westerhoff, Hans V.

Journal:

Quantitative Biology

Year:

2015

Language:

english

File:

PDF, 123 KB

english, 2015

55

Design principles of nuclear receptor signaling: how complex networking improves signal transduction

Kolodkin, Alexey N, Bruggeman, Frank J, Plant, Nick, Moné, Martijn J, Bakker, Barbara M, Campbell, Moray J, van Leeuwen, Johannes P T M, Carlberg, Carsten, Snoep, Jacky L, Westerhoff, Hans V

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 1013 KB

english, 2010

56

Editorial: 12th BTK Meeting: ‘Systems Biology: redefining BioThermoKinetics’

Snoep, Jacky L., Rohwer, Johann M., Hofmeyr, Jan-Hendrik S.

Journal:

IEE Proceedings - Systems Biology

Year:

2006

Language:

english

File:

PDF, 42 KB

english, 2006

57

[ACM Press the first international joint conference - Bologna, Italy (2002.07.15-2002.07.19)] Proceedings of the first international joint conference on Autonomous agents and multiagent systems part 1 - AAMAS '02 - Embodied intentional dynamics of bacterial behaviour

Jonker, Catholijn M., Snoep, Jacky L., Treur, Jan, Westerhoff, Hans V., Wijngaards, Wouter C. A.

Year:

2002

Language:

english

File:

PDF, 126 KB

english, 2002

58

SEEK: a systems biology data and model management platform

Wolstencroft, Katherine, Owen, Stuart, Krebs, Olga, Nguyen, Quyen, Stanford, Natalie J, Golebiewski, Martin, Weidemann, Andreas, Bittkowski, Meik, An, Lihua, Shockley, David, Snoep, Jacky L., Mueller,

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015

59

Stealthy annotation of experimental biology by spreadsheets

Wolstencroft, Katherine, Owen, Stuart, Horridge, Matthew, Jupp, Simon, Krebs, Olga, Snoep, Jacky, du Preez, Franco, Mueller, Wolfgang, Stevens, Robert, Goble, Carole

Journal:

Concurrency and Computation: Practice and Experience

Year:

2013

Language:

english

File:

PDF, 455 KB

english, 2013

60

Enzymes or redox couples? The kinetics of thioredoxin and glutaredoxin reactions in a systems biology context

Pillay, Ché S., Hofmeyr, Jan-Hendrik S., Olivier, Brett G., Snoep, Jacky L., Rohwer, Johann M.

Journal:

Biochemical Journal

Year:

2009

Language:

english

File:

PDF, 178 KB

english, 2009

61

Glucose and the ATP paradox in yeast

SOMSEN, Oscar J. G., HOEBEN, Martijn A., ESGALHADO, Eugenia, SNOEP, Jacky L., VISSER, Diana, HEIJDEN, Rene T. J. M., HEIJNEN, Joseph J., WESTERHOFF, Hans V.

Journal:

Biochemical Journal

Year:

2000

Language:

english

File:

PDF, 147 KB

english, 2000

62

Targeting glycolysis in the malaria parasite Plasmodium falciparum

van Niekerk, David D., Penkler, Gerald P., du Toit, Francois, Snoep, Jacky L.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

63

Glucose and the ATP paradox in yeast

SOMSEN, Oscar J.G., HOEBEN, Martijn A., ESGALHADO, Eugenia, SNOEP, Jacky L., VISSER, Diana, van der HEIJDEN, Rene T.J.M., HEIJNEN, Joseph J., WESTERHOFF, Hans V.

Journal:

Biochemical Journal

Year:

2000

Language:

english

File:

PDF, 147 KB

english, 2000

64

Towards understanding the extra's of metabolic pathways: the implementation of quantitative analyses

Snoep, Jacky L., Westerhoff, Hans V.

Journal:

Biochemical Society Transactions

Year:

1999

Language:

english

File:

PDF, 134 KB

english, 1999

65

Live Control of the Living Cell

van Heeswijk, Wally C., Bakker, Barbara M., Teusink, Bas, Kholodenko, Boris N., Somsen, Oscar J. G., Snoep, Jacky L., Westerhoff, Hans V.

Journal:

Biochemical Society Transactions

Year:

1999

Language:

english

File:

PDF, 90 KB

english, 1999

66

Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis

Hoefnagel, Marcel H. N., Hugenholtz, Jeroen, Van Swam, Iris I., Westerhoff, Hans V., Martens, Dirk E., Starrenburg, Marjo J. C., Snoep, Jacky L., Kleerebezem, Michiel, Bongers, Roger

Journal:

Microbiology (Society for General Microbiology)

Year:

2002

Language:

english

File:

PDF, 337 KB

english, 2002

67

Glycolysis and Flux Control

Romeo, Tony, Snoep, Jacky L.

Journal:

Year:

2005

Language:

english

File:

PDF, 564 KB

english, 2005

68

SPIE Proceedings [SPIE SPIE Nanoscience + Engineering - San Diego, California, United States (Sunday 28 August 2016)] Optical Trapping and Optical Micromanipulation XIII - An optical tweezers, epi-fluorescence and microfluidic-setup for synchronization studies of glycolytic oscillations in living yeast cells

Dholakia, Kishan, Spalding, Gabriel C., Mojica-Benavides, Martin, Banaeiyan, Amin A., van Niekerk, David D., Snoep, Jacky L., Gustavsson, Anna-Karin, Adiels, Caroline B., Goksör, Mattias

Year:

2016

Language:

english

File:

PDF, 2.49 MB

english, 2016

69

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

Wolstencroft, Katherine, Krebs, Olga, Snoep, Jacky L., Stanford, Natalie J., Bacall, Finn, Golebiewski, Martin, Kuzyakiv, Rostyk, Nguyen, Quyen, Owen, Stuart, Soiland-Reyes, Stian, Straszewski, Jakub,

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 594 KB

english, 2017

70

The JWS online simulation database

Peters, Martin, Eicher, Johann J., van Niekerk, David D., Waltemath, Dagmar, Snoep, Jacky L.

Journal:

Year:

2017

Language:

english

File:

PDF, 105 KB

english, 2017

71

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

Mulder, Nicola J., Christoffels, Alan, de Oliveira, Tulio, Gamieldien, Junaid, Hazelhurst, Scott, Joubert, Fourie, Kumuthini, Judit, Pillay, Ché S., Snoep, Jacky L., Tastan Bishop, Özlem, Tiffin, Nick

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 427 KB

english, 2016

72

Fourth-Generation Progestins Inhibit 3β-Hydroxysteroid Dehydrogenase Type 2 and Modulate the Biosynthesis of Endogenous Steroids

Louw-du Toit, Renate, Perkins, Meghan S., Snoep, Jacky L., Storbeck, Karl-Heinz, Africander, Donita, Ghosh, Debashis

Journal:

Year:

2016

Language:

english

File:

PDF, 2.77 MB

english, 2016

73

The Peculiar Glycolytic Pathway in Hyperthermophylic Archaea: Understanding Its Whims by Experimentation In Silico

Zhang, Yanfei, Kouril, Theresa, Snoep, Jacky, Siebers, Bettina, Barberis, Matteo, Westerhoff, Hans

Journal:

International Journal of Molecular Sciences

Year:

2017

Language:

english

File:

PDF, 951 KB

english, 2017

74

11-Oxygenated androgen precursors are the preferred substrates for aldo-keto reductase 1C3 (AKR1C3): Implications for castration resistant prostate cancer

Barnard, Monique, Quanson, Jonathan L., Mostaghel, Elahe, Pretorius, Elzette, Snoep, Jacky L., Storbeck, Karl-Heinz

Journal:

The Journal of Steroid Biochemistry and Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.82 MB

english, 2018

75

Studying Glycolytic Oscillations in Individual Yeast Cells by Combining Fluorescence Microscopy with Microfluidics and Optical Tweezers

Gustavsson, Anna-Karin, Banaeiyan, Amin A., van Niekerk, David D., Snoep, Jacky L., Adiels, Caroline B., Goksör, Mattias

Journal:

Current Protocols in Cell Biology

Year:

2018

Language:

english

File:

PDF, 1.14 MB

english, 2018

76

Phosphofructokinase controls the acetaldehyde induced phase shift in isolated yeast glycolytic oscillators

van Niekerk, David, Gustavsson, Anna-Karin Anna-Karin, Mojica-Benavides, Martin, Adiels, Caroline B, Goksor, Mattias, Snoep, Jacky L

Journal:

Biochemical Journal

Year:

2018

Language:

english

File:

PDF, 11.21 MB

english, 2018

77

OneStop:JWS Online's access point to SBML,SBGN and MIRIAM compliant annotation

Snoep, Jacky, Du Preez, Franco, Owen, Stuart, Wolstencroft, Katherine, Krebs, Olga, Müller, Wolfgang, Goble, Carole

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 1020 KB

english, 2011

78

OneStop:JWS Online's access point to SBML,SBGN and MIRIAM compliant annotation

Snoep, Jacky, Du Preez, Franco, Owen, Stuart, Wolstencroft, Katherine, Krebs, Olga, Müller, Wolfgang, Goble, Carole

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 1020 KB

2011

79

The A-ring reduction of 11-ketotestosterone is efficiently catalysed by AKR1D1 and SRD5A2 but not SRD5A1

Barnard, Lise, Nikolaou, Nikolaos, Louw, Carla, Schiffer, Lina, Gibson, Hylton, Gilligan, Lorna C., Gangitano, Elena, Snoep, Jacky, Arlt, Wiebke, Tomlinson, Jeremy W., Storbeck, Karl-Heinz

Journal:

The Journal of Steroid Biochemistry and Molecular Biology

Year:

2020

File:

PDF, 2.96 MB

2020