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1

Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates

Boris Sobolev, Dmitry Filimonov, Alexey Lagunin, Alexey Zakharov, Olga Koborova, Alexander Kel, Vladimir Poroikov

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.30 MB

english, 2010

2

Anticonvulsant activity and acute neurotoxic profile of Achyranthes aspera Linn.

Gawande, Dinesh Y., Druzhilovsky, Dmitry, Gupta, Raghbir Chand, Poroikov, Vladimir, Goel, Rajesh Kumar

Journal:

Journal of Ethnopharmacology

Year:

2017

Language:

english

File:

PDF, 508 KB

english, 2017

3

Naturally occurring aromatic steroids and their biological activities

Dembitsky, Valery M., Savidov, Nick, Poroikov, Vladimir V., Gloriozova, Tatyana A., Imbs, Andrew B.

Journal:

Applied Microbiology and Biotechnology

Year:

2018

Language:

english

File:

PDF, 862 KB

english, 2018

4

Peroxy steroids derived from plant and fungi and their biological activities

Vil, Vera A., Gloriozova, Tatyana A., Poroikov, Vladimir V., Terent’ev, Alexander O., Savidov, Nick, Dembitsky, Valery M.

Journal:

Applied Microbiology and Biotechnology

Year:

2018

Language:

english

File:

PDF, 861 KB

english, 2018

5

Computer-Aided Estimation of Synthetic CompoundsSimilarity with Endogenous Bioregulations

Yulia Borodina, Dmitrii Filimonov, Vladimir Poroikov

Journal:

Molecular Informatics

Year:

1998

Language:

english

File:

PDF, 109 KB

english, 1998

6

Computer Aided Predicting the Biological Activity Spectra and Experimental Testing of New Thiazole Derivatives

Athina Geronikaki, Vladimir Poroikov, Dimitra Hadjipavlou-Litina, Dmitrii Filimonov, Alexei Lagunin, Remi Mgonzo

Journal:

Molecular Informatics

Year:

1999

Language:

english

File:

PDF, 126 KB

english, 1999

7

Revealing Medicinal Plants That Are Useful for the Comprehensive Management of Epilepsy and Associated Comorbidities through In Silico Mining of Their Phytochemical Diversity

Goel, Rajesh, Gawande, Dinesh, Lagunin, Alexey, Randhawa, Puneet, Mishra, Awanish, Poroikov, Vladimir

Journal:

Year:

2015

Language:

english

File:

PDF, 361 KB

english, 2015

8

Multi-Targeted Natural Products Evaluation Based on Biological Activity Prediction with PASS

Lagunin, Alexey, Filimonov, Dmitry, Poroikov, Vladimir

Journal:

Current Pharmaceutical Design

Year:

2010

Language:

english

File:

PDF, 733 KB

english, 2010

9

Identification of potential drug targets for treatment of refractory epilepsy using network pharmacology

Bezhentsev, Vladislav, Ivanov, Sergey, Kumar, Sandeep, Goel, Rajesh, Poroikov, Vladimir

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2018

Language:

english

File:

PDF, 390 KB

english, 2018

10

Molecular Property Diagnostic Suite for Diabetes Mellitus (MPDS DM ): An Integrated Web Portal for Drug Discovery and Drug Repurposing

Singh Gaur, Anamika, Nagamani, Selvaraman, Tanneeru, Karunakar, Druzhilovskiy, Dmitry, Rudik, Anastassia, Poroikov, Vladimir, Narahari Sastry, G.

Journal:

Journal of Biomedical Informatics

Year:

2018

Language:

english

File:

PDF, 1.70 MB

english, 2018

11

Highly oxygenated isoprenoid lipids derived from fungi and fungal endophytes: Origin and biological activities

Savidov, Nick, Gloriozova, Tatyana A., Poroikov, Vladimir V., Dembitsky, Valery M.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.39 MB

english, 2018

12

Naturally occurring of α,β-diepoxy-containing compounds: origin, structures, and biological activities

Vil, Vera, Gloriozova, Tatyana A., Poroikov, Vladimir V., Terent’ev, Alexander O., Savidov, Nick, Dembitsky, Valery M.

Journal:

Applied Microbiology and Biotechnology

Year:

2019

Language:

english

File:

PDF, 1.37 MB

english, 2019

13

Data and Text Mining Help Identify Key Proteins Involved in the Molecular Mechanisms Shared by SARS-CoV-2 and HIV-1

Tarasova, Olga, Ivanov, Sergey, Filimonov, Dmitry A., Poroikov, Vladimir

Journal:

Year:

2020

File:

PDF, 1.78 MB

2020

14

Antihypoxic Action of Panax Japonicus , Tribulus Terrestris and Dioscorea Deltoidea Cell Cultures: In Silico and Animal Studies

Lagunin, Alexey, Povydysh, Maria, Ivkin, Dmitry, Luzhanin, Vladimir, Krasnova, Marina, Okovityi, Sergei, Nosov, Alexander, Titova, Maria, Tomilova, Svetlana, Filimonov, Dmitry, Poroikov, Vladimir

Journal:

Molecular Informatics

Year:

2020

File:

PDF, 1.60 MB

2020

15

Automated Extraction of Information From Texts of Scientific Publications: Insights Into HIV Treatment Strategies

Biziukova, Nadezhda, Tarasova, Olga, Ivanov, Sergey, Poroikov, Vladimir

Journal:

Frontiers in Genetics

Year:

2020

File:

PDF, 624 KB

2020

16

ChemInform Abstract: Chemical Similarity Assessment Through Multilevel Neighborhoods of Atoms: Definition and Comparison with the Other Descriptors.

Dmitrii Filimonov, Vladimir Poroikov, Yulia Borodina, Tatyana Gloriozova

Journal:

Year:

1999

File:

PDF, 25 KB

1999

17

QSAR Modelling of Rat Acute Toxicity on the Basis of PASS Prediction

Alexey Lagunin, Alexey Zakharov, Dmitry Filimonov, Vladimir Poroikov

Journal:

Molecular Informatics

Year:

2011

Language:

english

File:

PDF, 786 KB

english, 2011

18

Design, synthesis, computational and biological evaluation of new anxiolytics

Athina Geronikaki, Eugeni Babaev, John Dearden, Wim Dehaen, Dmitrii Filimonov, Irina Galaeva, Valentina Krajneva, Alexey Lagunin, Fliur Macaev, Guenadiy Molodavkin, Vladimir Poroikov, Serghei Pogrebno

Journal:

Bioorganic & Medicinal Chemistry

Year:

2004

Language:

english

File:

PDF, 367 KB

english, 2004

19

Computer-Aided Prediction of Rodent Carcinogenicity by PASS and CISOC-PSCT

Alexey Lagunin, Dmitrii Filimonov, Alexey Zakharov, Wei Xie, Ying Huang, Fucheng Zhu, Tianxiang Shen, Jianhua Yao, Vladimir Poroikov

Journal:

Molecular Informatics

Year:

2009

Language:

english

File:

PDF, 231 KB

english, 2009

20

PASS-assisted exploration of new therapeutic potential of natural products

Rajesh Kumar Goel, Damanpreet Singh, Alexey Lagunin, Vladimir Poroikov

Journal:

Medicinal Chemistry Research

Year:

2011

Language:

english

File:

PDF, 1.83 MB

english, 2011

21

Why relevant chemical information cannot be exchanged without disclosing structures

Dmitry Filimonov, Vladimir Poroikov

Journal:

Journal of Computer-Aided Molecular Design

Year:

2005

Language:

english

File:

PDF, 526 KB

english, 2005

22

Computer-Aided Discovery of Anti-Inflammatory Thiazolidinones with Dual Cyclooxygenase/Lipoxygenase Inhibition

Geronikaki, Athina A., Lagunin, Alexey A., Hadjipavlou-Litina, Dimitra I., Eleftheriou, Phaedra T., Filimonov, Dmitrii A., Poroikov, Vladimir V., Alam, Intekhab, Saxena, Anil K.

Journal:

Journal of Medicinal Chemistry

Year:

2008

Language:

english

File:

PDF, 231 KB

english, 2008

23

Synthesis, antifungal activity and QSAR study of 2-arylhydroxynitroindoles

Galina V. Kokurkina, Mikhail D. Dutov, Svyatoslav A. Shevelev, Sergey V. Popkov, Alexey V. Zakharov, Vladimir V. Poroikov

Journal:

European Journal of Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 491 KB

english, 2011

24

Fragment-based design, docking, synthesis, biological evaluation and structure–activity relationships of 2-benzo/benzisothiazolimino-5-aryliden-4-thiazolidinones as cycloxygenase/lipoxygenase inhibitors

Phaedra Eleftheriou, Athina Geronikaki, Dimitra Hadjipavlou-Litina, Paola Vicini, Olga Filz, Dmitry Filimonov, Vladimir Poroikov, Shailendra S. Chaudhaery, Kuldeep K. Roy, Anil K. Saxena

Journal:

European Journal of Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 2.04 MB

english, 2012

25

OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia

Olga Tcheremenskaia, Romualdo Benigni, Ivelina Nikolova, Nina Jeliazkova, Sylvia E Escher, Monika Batke, Thomas Baier, Vladimir Poroikov, Alexey Lagunin, Micha Rautenberg, Barry Hardy

Journal:

Journal of Biomedical Semantics

Year:

2012

Language:

english

File:

PDF, 727 KB

english, 2012

26

Computer-aided rodent carcinogenicity prediction

Alexey A. Lagunin, John C. Dearden, Dmitri A. Filimonov, Vladimir V. Poroikov

Journal:

Mutation Research/Genetic Toxicology and Environmental Mutagenesis

Year:

2005

Language:

english

File:

PDF, 195 KB

english, 2005

27

Directions in QSAR Modeling for Regulatory Uses in OECD Member Countries, EU and in Russia

FJODOROVA, NATALJA, NOVICH, MARJANA, VRACHKO, MARJAN, SMIRNOV, VJACHESLAV, KHARCHEVNIKOVA, NINA, ZHOLDAKOVA, ZOYA, NOVIKOV, SERGEI, SKVORTSOVA, NATALJA, FILIMONOV, DMITRII, POROIKOV, VLADIMIR, BENFENA

Journal:

Journal of Environmental Science and Health Part C

Year:

2008

Language:

english

File:

PDF, 249 KB

english, 2008

28

Evaluation of the local anaesthetic activity of 3-aminobenzo[d]isothiazole derivatives using the rat sciatic nerve model

Athina Geronikaki, Paola Vicini, Nikos Dabarakis, Alexey Lagunin, Vladimir Poroikov, John Dearden, Hassan Modarresi, Mark Hewitt, George Theophilidis

Journal:

European Journal of Medicinal Chemistry

Year:

2009

Language:

english

File:

PDF, 346 KB

english, 2009

29

In silico assessment of acute toxicity in rodents

Alexey Lagunin, Alexey Zakharov, Dmitry Filimonov, Vladimir Poroikov

Journal:

Toxicology Letters

Year:

2009

Language:

english

File:

PDF, 87 KB

english, 2009

30

Discriminating between Drugs and Nondrugs by Prediction of Activity Spectra for Substances (PASS)

Anzali, Soheila, Barnickel, Gerhard, Cezanne, Bertram, Krug, Michael, Filimonov, Dmitrii, Poroikov, Vladimir

Journal:

Journal of Medicinal Chemistry

Year:

2001

Language:

english

File:

PDF, 50 KB

english, 2001

31

Ameliorative effect of Curcumin on seizure severity, depression like behavior, learning and memory deficit in post-pentylenetetrazole-kindled mice

Choudhary, Kailash M., Mishra, Awanish, Poroikov, Vladimir V., Goel, Rajesh Kumar

Journal:

European Journal of Pharmacology

Year:

2013

Language:

english

File:

PDF, 533 KB

english, 2013

32

Quantitative Prediction of Antitarget Interaction Profiles for Chemical Compounds

Zakharov, Alexey V., Lagunin, Alexey A., Filimonov, Dmitry A., Poroikov, Vladimir V.

Journal:

Chemical Research in Toxicology

Year:

2012

Language:

english

File:

PDF, 1.33 MB

english, 2012

33

Metabolism Site Prediction Based on Xenobiotic Structural Formulas and PASS Prediction Algorithm

Rudik, Anastasia V., Dmitriev, Alexander V., Lagunin, Alexey A., Filimonov, Dmitry A., Poroikov, Vladimir V.

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 465 KB

english, 2014

34

Revealing pharmacodynamics of medicinal plants using in silico approach: A case study with wet lab validation

Singh, Damanpreet, Gawande, Dinesh Y., Singh, Tanveer, Poroikov, Vladimir, Goel, Rajesh Kumar

Journal:

Computers in Biology and Medicine

Year:

2014

Language:

english

File:

PDF, 1.13 MB

english, 2014

35

Identification of Drug-Induced Myocardial Infarction-Related Protein Targets through the Prediction of Drug–Target Interactions and Analysis of Biological Processes

Ivanov, Sergey M., Lagunin, Alexey A., Pogodin, Pavel V., Filimonov, Dmitry A., Poroikov, Vladimir V.

Journal:

Chemical Research in Toxicology

Year:

2014

Language:

english

File:

PDF, 5.37 MB

english, 2014

36

Rational Design of Macrolides by Virtual Screening of Combinatorial Libraries Generated through in Silico Manipulation of Polyketide Synthases

Zotchev, Sergey B., Stepanchikova, Alla V., Sergeyko, Anastasia P., Sobolev, Boris N., Filimonov, Dmitrii A., Poroikov, Vladimir V.

Journal:

Journal of Medicinal Chemistry

Year:

2006

Language:

english

File:

PDF, 307 KB

english, 2006

37

Fragment-based lead design

Filz, O A, Poroikov, Vladimir V

Journal:

Russian Chemical Reviews

Year:

2012

Language:

english

File:

PDF, 230 KB

english, 2012

38

Computer-Aided Selection of Potential Antihypertensive Compounds with Dual Mechanism of Action

Lagunin, Alexey A., Gomazkov, Oleg A., Filimonov, Dmitrii A., Gureeva, Tatyana A., Dilakyan, Elvira A., Kugaevskaya, Elena V., Elisseeva, Yulia E., Solovyeva, Nina I., Poroikov, Vladimir V.

Journal:

Journal of Medicinal Chemistry

Year:

2003

Language:

english

File:

PDF, 104 KB

english, 2003

39

Synthesis and anticancer activity of quinopimaric and maleopimaric acids’ derivatives

Tretyakova, Elena V., Smirnova, Irina E., Kazakova, Oxana B., Tolstikov, Genrikh A., Yavorskaya, Nadejda P., Golubeva, Irina S., Pugacheva, Rujena B., Apryshko, Galina N., Poroikov, Vladimir V.

Journal:

Bioorganic & Medicinal Chemistry

Year:

2014

Language:

english

File:

PDF, 478 KB

english, 2014

40

Synthesis and chemoinformatics analysis ofN-aryl-β-alanine derivatives

Anusevicius, Kazimieras, Mickevicius, Vytautas, Stasevych, Maryna, Zvarych, Victor, Komarovska-Porokhnyavets, Olena, Novikov, Volodymyr, Tarasova, Olga, Gloriozova, Tatyana, Poroikov, Vladimir

Journal:

Research on Chemical Intermediates

Year:

2015

Language:

english

File:

PDF, 1.58 MB

english, 2015

41

Naturally occurring plant isoquinoline N-oxide alkaloids: Their pharmacological and SAR activities

Dembitsky, Valery M., Gloriozova, Tatyana A., Poroikov, Vladimir V.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

42

Preface

Zefirov, Nikolay, Poroikov, Vladimir, Raevsky, Oleg

Journal:

SAR and QSAR in Environmental Research

Year:

2001

Language:

english

File:

PDF, 121 KB

english, 2001

43

Prediction of Protein Functional Specificity without an Alignment

Fomenko, Andrey, Filimonov, Dmitry, Sobolev, Boris, Poroikov, Vladimir

Journal:

Omics A Journal of Integrative Biology

Year:

2006

Language:

english

File:

PDF, 179 KB

english, 2006

44

RECOGNITION OF PROTEIN FUNCTION USING THE LOCAL SIMILARITY

ALEXANDROV, KIRILL, SOBOLEV, BORIS, FILIMONOV, DMITRY, POROIKOV, VLADIMIR

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.11 MB

english, 2008

45

SOMP: web server for in silico prediction of sites of metabolism for drug-like compounds

Rudik, Anastasia, Dmitriev, Alexander, Lagunin, Alexey, Filimonov, Dmitry, Poroikov, Vladimir

Journal:

Year:

2015

Language:

english

File:

PDF, 264 KB

english, 2015

46

Design, Synthesis and Pharmacological Evaluation of Novel Vanadium-Containing Complexes as Antidiabetic Agents

Fedorova, Elena V., Buryakina, Anna V., Zakharov, Alexey V., Filimonov, Dmitry A., Lagunin, Alexey A., Poroikov, Vladimir V., Barchi, Joseph J.

Journal:

Year:

2014

File:

PDF, 5.00 MB

2014

47

QSAR Modeling Using Large-Scale Databases: Case Study for HIV-1 Reverse Transcriptase Inhibitors

Tarasova, Olga A., Urusova, Aleksandra F., Filimonov, Dmitry A., Nicklaus, Marc C., Zakharov, Alexey V., Poroikov, Vladimir V.

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 1.26 MB

english, 2015

48

Novel Antitumor Agents: Marine Sponge Alkaloids, their Synthetic Analogs and Derivatives

Dembitsky, Valery, Gloriozova, Tatyana, Poroikov, Vladimir

Journal:

Mini Reviews in Medicinal Chemistry

Year:

2005

Language:

english

File:

PDF, 208 KB

english, 2005

49

Natural Peroxy Anticancer Agents

Valery M. Dembitsky, Bentham Science Publisher, Tatyana A. Gloriozova, Bentham Science Publisher, Vladimir V. Poroikov, Bentham Science Publisher

Journal:

Mini Reviews in Medicinal Chemistry

Year:

2007

Language:

english

File:

PDF, 398 KB

english, 2007

50

Synthesis and anticancer activity of aminopropoxytriterpenoids

Giniyatyllina, Gulnara V., Smirnova, Irina E., Kazakova, Oxana B., Yavorskaya, Nadejda P., Golubeva, Irina S., Zhukova, Olga S., Pugacheva, Rujena B., Apryshko, Galina N., Poroikov, Vladimir V.

Journal:

Medicinal Chemistry Research

Year:

2015

Language:

english

File:

PDF, 644 KB

english, 2015