Vaqueriza, D: search on Z-Library

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1

DNA-Binding Specificities of Human Transcription Factors

Jolma, Arttu, Yan, Jian, Whitington, Thomas, Toivonen, Jarkko, Nitta, Kazuhiro R., Rastas, Pasi, Morgunova, Ekaterina, Enge, Martin, Taipale, Mikko, Wei, Gonghong, Palin, Kimmo, Vaquerizas, Juan M., V

Journal:

Year:

2013

Language:

english

File:

PDF, 2.38 MB

english, 2013

2

Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription

Hug, Clemens B., Grimaldi, Alexis G., Kruse, Kai, Vaquerizas, Juan M.

Journal:

Year:

2017

Language:

english

File:

PDF, 10.36 MB

english, 2017

3

A census of human transcription factors: function, expression and evolution

Vaquerizas, Juan M., Kummerfeld, Sarah K., Teichmann, Sarah A., Luscombe, Nicholas M.

Journal:

Nature Reviews Genetics

Year:

2009

Language:

english

File:

PDF, 746 KB

english, 2009

4

SpeCond: a method to detect condition-specific gene expression

Florence MG Cavalli, Richard Bourgon, Juan M Vaquerizas…

Journal:

Year:

2011

Language:

english

File:

PDF, 65 KB

english, 2011

5

Induction treatment with monoclonal antibodies for heart transplantation

Juan F. Delgado, David Vaqueriza, Violeta Sánchez, Pilar Escribano, Maria J. Ruiz-Cano, Emilio Renes, Miguel A. Gómez-Sánchez, Jose M. Cortina, Carlos S. de la Calzada

Journal:

Transplantation Reviews

Year:

2011

Language:

english

File:

PDF, 127 KB

english, 2011

6

Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions

Josep Ramon Goñi, Juan Manuel Vaquerizas, Joaquin Dopazo, Modesto Orozco

Journal:

Year:

2006

Language:

english

File:

PDF, 352 KB

english, 2006

7

Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences

Daniel Rico, Juan M Vaquerizas, Hernán Dopazo, Lisardo Boscá

Journal:

Year:

2007

Language:

english

File:

PDF, 420 KB

english, 2007

8

Genome-wide Analysis Reveals MOF as a Key Regulator of Dosage Compensation and Gene Expression in Drosophila

Jop Kind, Juan M. Vaquerizas, Philipp Gebhardt, Marc Gentzel, Nicholas M. Luscombe, Paul Bertone, Asifa Akhtar

Journal:

Year:

2008

Language:

english

File:

PDF, 2.15 MB

english, 2008

9

The MOF Chromobarrel Domain Controls Genome-wide H4K16 Acetylation and Spreading of the MSL Complex

Thomas Conrad, Florence M.G. Cavalli, Herbert Holz, Erinc Hallacli, Jop Kind, Ibrahim Ilik, Juan M. Vaquerizas, Nicholas M. Luscombe, Asifa Akhtar

Journal:

Developmental Cell

Year:

2012

Language:

english

File:

PDF, 1.76 MB

english, 2012

10

358: Comparison of basiliximab and OKT3 as induction agents after heart transplantation

D. Vaqueriza, J.F. Delgado, V. Sanchez, E. Renes, P. Escribano, J. Cortina, C. Saenz de la Calzada

Journal:

The Journal of Heart and Lung Transplantation

Year:

2006

Language:

english

File:

PDF, 65 KB

english, 2006

11

The Nonspecific Lethal Complex Is a Transcriptional Regulator in Drosophila

Sunil Jayaramaiah Raja, Iryna Charapitsa, Thomas Conrad, Juan M. Vaquerizas, Philipp Gebhardt, Herbert Holz, Jan Kadlec, Sven Fraterman, Nicholas M. Luscombe, Asifa Akhtar

Journal:

Year:

2010

Language:

english

File:

PDF, 2.12 MB

english, 2010

12

Indicaciones de las pruebas isotópicas en cardiopatía isquémica

I. Sánchez Pérez, R. Salguero Bodes, D. Vaqueriza Cubillo, C. Sáenz de la Calzada Campos

Journal:

Medicine - Programa de Formación Médica Continuada Acreditado (Elsevier España)

Year:

2005

Language:

spanish

File:

PDF, 81 KB

spanish, 2005

13

Tratamiento invasivo del infarto. Criterios de seguimiento y de respuesta. Rehabilitación cardíaca

D. Vaqueriza Cubillo, R. Matía Francés, I. Sánchez Pérez, C. Sáenz de la Calzada Campos

Journal:

Medicine - Programa de Formación Médica Continuada Acreditado (Elsevier España)

Year:

2005

File:

PDF, 708 KB

2005

14

Complicaciones del infarto de miocardio

R. Matía Francés, R. Salguero Bodes, D. Vaqueriza Cubillo, C. Sáenz de la Calzada Campos

Journal:

Medicine - Programa de Formación Médica Continuada Acreditado (Elsevier España)

Year:

2005

File:

PDF, 476 KB

2005

15

Tratamiento farmacológico del infarto agudo de miocardio. Fibrinólisis. Criterios de respuesta y seguimiento

D. Vaqueriza Cubillo, R. Salguero Bodes, V. Suberviola Sánchez-Caballero, C. Sáenz de la Calzada Campos

Journal:

Medicine - Programa de Formación Médica Continuada Acreditado (Elsevier España)

Year:

2005

File:

PDF, 129 KB

2005

16

m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence

Jüri Reimand, Anu Aun, Jaak Vilo, Juan M Vaquerizas, Juhan Sedman, Nicholas M Luscombe

Journal:

Year:

2012

Language:

english

File:

PDF, 2.77 MB

english, 2012

17

Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters

Conrad, T., Cavalli, F. M. G., Vaquerizas, J. M., Luscombe, N. M., Akhtar, A.

Journal:

Year:

2012

Language:

english

File:

PDF, 625 KB

english, 2012

18

SpeCond: a method to detect condition-specific gene expression

Florence MG Cavalli, Richard Bourgon, Wolfgang Huber, Juan M Vaquerizas…

Journal:

Year:

2011

Language:

english

File:

PDF, 1.51 MB

english, 2011

19

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

Jolma, A., Kivioja, T., Toivonen, J., Cheng, L., Wei, G., Enge, M., Taipale, M., Vaquerizas, J. M., Yan, J., Sillanpaa, M. J., Bonke, M., Palin, K., Talukder, S., Hughes, T. R., Luscombe, N. M., Ukkon

Journal:

Genome Research

Year:

2010

Language:

english

File:

PDF, 1.63 MB

english, 2010

20

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments

Al-Shahrour, F., Minguez, P., Tarraga, J., Montaner, D., Alloza, E., Vaquerizas, J. M., Conde, L., Blaschke, C., Vera, J., Dopazo, J.

Journal:

Nucleic Acids Research

Year:

2006

Language:

english

File:

PDF, 74 KB

english, 2006

21

PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level

Conde, L., Vaquerizas, J. M., Santoyo, J., Al-Shahrour, F., Ruiz-Llorente, S., Robledo, M., Dopazo, J.

Journal:

Nucleic Acids Research

Year:

2004

Language:

english

File:

PDF, 202 KB

english, 2004

22

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments

Al-Shahrour, F., Minguez, P., Vaquerizas, J. M., Conde, L., Dopazo, J.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 75 KB

english, 2005

23

DNMAD: web-based diagnosis and normalization for microarray data

Vaquerizas, J. M., Dopazo, J., Diaz-Uriarte, R.

Journal:

Year:

2004

Language:

english

File:

PDF, 42 KB

english, 2004

24

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes

Conde, L., Vaquerizas, J. M., Ferrer-Costa, C., de la Cruz, X., Orozco, M., Dopazo, J.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 223 KB

english, 2005

25

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

Conde, L., Vaquerizas, J. M., Dopazo, H., Arbiza, L., Reumers, J., Rousseau, F., Schymkowitz, J., Dopazo, J.

Journal:

Nucleic Acids Research

Year:

2006

Language:

english

File:

PDF, 258 KB

english, 2006

26

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data

Vaquerizas, J. M., Conde, L., Yankilevich, P., Cabezon, A., Minguez, P., Diaz-Uriarte, R., Al-Shahrour, F., Herrero, J., Dopazo, J.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 393 KB

english, 2005

27

Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets

Reimand, J., Vaquerizas, J. M., Todd, A. E., Vilo, J., Luscombe, N. M.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 553 KB

english, 2010

28

Response to Comments on "Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters"

Vaquerizas, J. M., Cavalli, F. M. G., Conrad, T., Akhtar, A., Luscombe, N. M.

Journal:

Year:

2013

Language:

english

File:

PDF, 507 KB

english, 2013

29

Nuclear Pore Proteins Nup153 and Megator Define Transcriptionally Active Regions in the Drosophila Genome

Vaquerizas, Juan M., Suyama, Ritsuko, Kind, Jop, Miura, Kota, Luscombe, Nicholas M., Akhtar, Asifa, Reik, Wolf

Journal:

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

30

The NSL Complex Regulates Housekeeping Genes in Drosophila

Lam, Kin Chung, Mühlpfordt, Friederike, Vaquerizas, Juan M., Raja, Sunil Jayaramaiah, Holz, Herbert, Luscombe, Nicholas M., Manke, Thomas, Akhtar, Asifa, Carroll, Jason

Journal:

Year:

2012

Language:

english

File:

PDF, 2.38 MB

english, 2012

31

Highly specific and accurate selection of siRNAs for high-throughput functional assays

Santoyo, J., Vaquerizas, J. M., Dopazo, J.

Journal:

Year:

2005

Language:

english

File:

PDF, 471 KB

english, 2005

32

Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly

Ishiuchi, Takashi, Enriquez-Gasca, Rocio, Mizutani, Eiji, Bošković, Ana, Ziegler-Birling, Celine, Rodriguez-Terrones, Diego, Wakayama, Teruhiko, Vaquerizas, Juan M, Torres-Padilla, Maria-Elena

Journal:

Nature Structural and Molecular Biology

Year:

2015

Language:

english

File:

PDF, 3.45 MB

english, 2015

33

Next station in microarray data analysis: GEPAS

Montaner, D., Tarraga, J., Huerta-Cepas, J., Burguet, J., Vaquerizas, J. M., Conde, L., Minguez, P., Vera, J., Mukherjee, S., Valls, J., Pujana, M. A. G., Alloza, E., Herrero, J., Al-Shahrour, F., Dop

Journal:

Nucleic Acids Research

Year:

2006

Language:

english

File:

PDF, 96 KB

english, 2006

34

New challenges in gene expression data analysis and the extended GEPAS

Herrero, J., Vaquerizas, J. M., Al-Shahrour, F., Conde, L., Mateos, A., Diaz-Uriarte, J. S. R., Dopazo, J.

Journal:

Nucleic Acids Research

Year:

2004

Language:

english

File:

PDF, 355 KB

english, 2004

35

Difference in survival from pre-hospital cardiac arrest between cities and villages in the Basque Autonomous Community

Ibarguren, Karlos, Unanue, Jose María, Alonso, Daniel, Vaqueriza, Itsaso, Irusta, Unai, Aramendi, Elisabete, Chicote, Beatriz

Journal:

Year:

2015

Language:

english

File:

PDF, 61 KB

english, 2015

36

Quality of chest compressions for EMT CPR in the Basque Autonomous Community

Alonso, Daniel, Vaqueriza, Itsaso, Corcuera, Carlos, Vicente, Fernando, Aramendi, Elisabete, Irusta, Unai, Chicote, Beatriz

Journal:

Year:

2015

Language:

english

File:

PDF, 71 KB

english, 2015

37

TADtool: Visual Parameter Identification for TAD-calling Algorithms

Kruse, Kai, Hug, Clemens B., Hernández-Rodríguez, Benjamín, Vaquerizas, Juan M.

Journal:

Year:

2016

Language:

english

File:

PDF, 445 KB

english, 2016

38

Dual randomization of oligonucleotides to reduce the bias in ribosome-profiling libraries

Lecanda, Aarón, Nilges, Benedikt S., Sharma, Puneet, Nedialkova, Danny D., Schwarz, Juliane, Vaquerizas, Juan M., Leidel, Sebastian A.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.25 MB

english, 2016

39

Developmental biology: Panoramic views of the early epigenome

Vaquerizas, Juan M., Torres-Padilla, Maria-Elena

Journal:

Year:

2016

Language:

english

File:

PDF, 156 KB

english, 2016

40

Cell–matrix signals specify bone endothelial cells during developmental osteogenesis

Langen, Urs H., Pitulescu, Mara E., Kim, Jung Mo, Enriquez-Gasca, Rocio, Sivaraj, Kishor K., Kusumbe, Anjali P., Singh, Amit, Di Russo, Jacopo, Bixel, M. Gabriele, Zhou, Bin, Sorokin, Lydia, Vaqueriza

Journal:

Nature Cell Biology

Year:

2017

Language:

english

File:

PDF, 20.28 MB

english, 2017

41

Transcriptional regulation of endothelial cell behavior during sprouting angiogenesis

Jeong, Hyun-Woo, Hernández-Rodríguez, Benjamín, Kim, JungMo, Kim, Kee-Pyo, Enriquez-Gasca, Rocio, Yoon, Juyong, Adams, Susanne, Schöler, Hans R., Vaquerizas, Juan M., Adams, Ralf H.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 5.15 MB

english, 2017

42

Neurological outcome after minimal invasive coronary artery surgery (NOMICS): protocol for an observational prospective cohort study

Nijs, Kristof, Vandenbrande, Jeroen, Vaqueriza, Fidel, Ory, Jean-Paul, Yilmaz, Alaaddin, Starinieri, Pascal, Dubois, Jasperina, Jamaer, Luc, Arijs, Ingrid, Stessel, Björn

Journal:

Year:

2017

Language:

english

File:

PDF, 562 KB

english, 2017

43

Fibrin glue as agent for sealing corneal and conjunctival wound leaks

Scalcione, C, Ortiz-Vaquerizas, D, Said, D G, Dua, H S

Journal:

Year:

2017

Language:

english

File:

PDF, 664 KB

english, 2017

44

A molecular roadmap for the emergence of early-embryonic-like cells in culture

Rodriguez-Terrones, Diego, Gaume, Xavier, Ishiuchi, Takashi, Weiss, Amélie, Kopp, Arnaud, Kruse, Kai, Penning, Audrey, Vaquerizas, Juan M., Brino, Laurent, Torres-Padilla, Maria-Elena

Journal:

Nature Genetics

Year:

2017

Language:

english

File:

PDF, 5.79 MB

english, 2017

45

Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo

Haines, Jenna E., Eisen, Michael B., Vaquerizas, Juan M.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.18 MB

english, 2018

46

Xrp1 genetically interacts with the ALS-associated FUS orthologue caz and mediates its toxicity

Mallik, Moushami, Catinozzi, Marica, Hug, Clemens B., Zhang, Li, Wagner, Marina, Bussmann, Julia, Bittern, Jonas, Mersmann, Sina, Klämbt, Christian, Drexler, Hannes C.A., Huynen, Martijn A., Vaqueriza

Journal:

The Journal of Cell Biology

Year:

2018

Language:

english

File:

PDF, 3.01 MB

english, 2018

47

The Birth of the 3D Genome during Early Embryonic Development

Hug, Clemens B., Vaquerizas, Juan M.

Journal:

Trends in Genetics

Year:

2018

Language:

english

File:

PDF, 2.16 MB

english, 2018

48

Generation of Genome-wide Chromatin Conformation Capture Libraries from Tightly Staged Early Drosophila Embryos

Hug, Clemens B., Vaquerizas, Juan M.

Journal:

Journal of Visualized Experiments

Year:

2018

Language:

english

File:

PDF, 1.04 MB

english, 2018

49

Chromatin conformation analysis of primary patient tissue using a low input Hi-C method

Díaz, Noelia, Kruse, Kai, Erdmann, Tabea, Staiger, Annette M., Ott, German, Lenz, Georg, Vaquerizas, Juan M.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.45 MB

english, 2018

50

Visualising three-dimensional genome organisation in two dimensions

Ing-Simmons, Elizabeth, Vaquerizas, Juan M.

Journal:

Development (The Company of Biologists)

Year:

2019

Language:

english

File:

PDF, 1.40 MB

english, 2019