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1

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

Florian Maumus, Andrew E Allen, Corinne Mhiri, Hanhua Hu, Kamel Jabbari, Assaf Vardi, Marie-Angèle Grandbastien, Chris Bowler

Journal:

Year:

2009

Language:

english

File:

PDF, 3.38 MB

english, 2009

2

Expansion of the redox-sensitive proteome coincides with the plastid endosymbiosis

Woehle, Christian, Dagan, Tal, Landan, Giddy, Vardi, Assaf, Rosenwasser, Shilo

Journal:

Year:

2017

Language:

english

File:

PDF, 2.20 MB

english, 2017

3

Nitric oxide mediates oxylipin production and grazing defense in diatoms

Johnson, Matthew D., Edwards, Bethanie R., Beaudoin, David J., Van Mooy, Benjamin A.S., Vardi, Assaf

Journal:

Environmental Microbiology

Year:

2019

Language:

english

File:

PDF, 3.34 MB

english, 2019

4

Synchronization of cell death in a dinoflagellate population is mediated by an excreted thiol protease

Assaf Vardi, Doron Eisenstadt, Omer Murik, Ilana Berman-Frank, Tamar Zohary, Alex Levine, Aaron Kaplan

Journal:

Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 505 KB

english, 2007

5

Towards clarification of the biological role of microcystins, a family of cyanobacterial toxins

Daniella Schatz, Yael Keren, Assaf Vardi, Assaf Sukenik, Shmuel Carmeli, Thomas Börner, Elke Dittmann, Aaron Kaplan

Journal:

Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 138 KB

english, 2007

6

IDENTIFICATION AND COMPARATIVE GENOMIC ANALYSIS OF SIGNALING AND REGULATORY COMPONENTS IN THE DIATOM THALASSIOSIRA PSEUDONANA

Anton Montsant, Andrew E. Allen, Sacha Coesel, Alessandra De Martino, Angela Falciatore, Manuela Mangogna, Magali Siaut, Marc Heijde, Kamel Jabbari, Uma Maheswari, Edda Rayko, Assaf Vardi, Kirk E. Apt

Journal:

Journal of Phycology

Year:

2007

Language:

english

File:

PDF, 1.91 MB

english, 2007

7

A Diatom Gene Regulating Nitric-Oxide Signaling and Susceptibility to Diatom-Derived Aldehydes

Assaf Vardi, Kay D. Bidle, Clifford Kwityn, Donald J. Hirsh, Stephanie M. Thompson, James A. Callow, Paul Falkowski, Chris Bowler

Journal:

Current Biology

Year:

2008

Language:

english

File:

PDF, 413 KB

english, 2008

8

An ecological and evolutionary context for integrated nitrogen metabolism and related signaling pathways in marine diatoms

Andrew E Allen, Assaf Vardi, Chris Bowler

Journal:

Current Opinion in Plant Biology

Year:

2006

Language:

english

File:

PDF, 344 KB

english, 2006

9

Dinoflagellate-Cyanobacterium Communication May Determine the Composition of Phytoplankton Assemblage in a Mesotrophic Lake

Assaf Vardi, Daniella Schatz, Karen Beeri, Uzi Motro, Assaf Sukenik, Alex Levine, Aaron Kaplan

Journal:

Current Biology

Year:

2002

Language:

english

File:

PDF, 346 KB

english, 2002

10

Programmed cell death of the dinoflagellate Peridinium gatunense is mediated by CO2 limitation and oxidative stress

Assaf Vardi, Ilana Berman-Frank, Taly Rozenberg, Ora Hadas, Aaron Kaplan, Alex Levine

Journal:

Current Biology

Year:

1999

Language:

english

File:

PDF, 90 KB

english, 1999

11

Oceanographic and Biogeochemical Insights from Diatom Genomes

Bowler, Chris, Vardi, Assaf, Allen, Andrew E.

Journal:

Annual Review of Marine Science

Year:

2010

Language:

english

File:

PDF, 3.72 MB

english, 2010

12

A chemical arms race at sea mediates algal host–virus interactions

Kay D Bidle, Assaf Vardi

Journal:

Current Opinion in Microbiology

Year:

2011

Language:

english

File:

PDF, 426 KB

english, 2011

13

A Stress Surveillance System Based on Calcium and Nitric Oxide in Marine Diatoms

Vardi, Assaf, Formiggini, Fabio, Casotti, Raffaella, Martino, Alessandra De, Ribalet, François, Miralto, Antonio, Bowler, Chris

Journal:

Year:

2006

Language:

english

File:

PDF, 474 KB

english, 2006

14

Correction: Diatom genomes come of age

Assaf Vardi, Kimberlee Thamatrakoln, Kay D Bidle, Paul G Falkowski

Journal:

Year:

2010

Language:

english

File:

PDF, 220 KB

english, 2010

15

Diatom genomes come of age

Assaf Vardi, Kimberlee Thamatrakoln, Kay D Bidle, Paul G Falkowski

Journal:

Year:

2008

Language:

english

File:

PDF, 508 KB

english, 2008

16

Photosynthesizing marine microorganisms can constitute a source of CO 2 rather than a sink

Tchernov, Dan, Hassidim, Miriam, Vardi, Assaf, Luz, Boaz, Sukenik, Assaf, Reinhold, Leonora, Kaplan, Aaron

Journal:

Canadian Journal of Botany

Year:

1998

File:

PDF, 135 KB

1998

17

Budding Yeast Escape Commitment to the Phosphate Starvation Program Using Gene Expression Noise

Vardi, Noam, Levy, Sagi, Assaf, Michael, Carmi, Miri, Barkai, Naama

Journal:

Current Biology

Year:

2013

Language:

english

File:

PDF, 1.03 MB

english, 2013

18

The Evolution of Tumor-Targeted Drug Delivery: From the EPR Effect to Nanoswimmers

Zoabi, Nour, Golani-Armon, Adi, Zinger, Assaf, Reshef, Maayan, Yaari, Zvi, Vardi-Oknin, Dikla, Shatsberg, Zohar, Shomar, Aseel, Shainsky-Roitman, Janna, Schroeder, Avi

Journal:

Israel Journal of Chemistry

Year:

2013

Language:

english

File:

PDF, 584 KB

english, 2013

19

Improving transcriptome construction in non-model organisms: integrating manual and automated gene definition inEmiliania huxleyi

Feldmesser, Ester, Rosenwasser, Shilo, Vardi, Assaf, Ben-Dor, Shifra

Journal:

Year:

2014

Language:

english

File:

PDF, 883 KB

english, 2014

20

Inhibition of Growth and Photosynthesis of the Dinoflagellate Peridinium gatunense by Microcystis sp. (cyanobacteria): A novel Allelopathic Mechanism

Assaf Sukenik, Rachel Eshkol, Alexander Livne, Ora Hadas, Meir Rom, Dani Tchernov, Assaf Vardi and Aaron Kaplan

Journal:

Limnology and Oceanography

Year:

2002

Language:

english

File:

PDF, 453 KB

english, 2002

21

Apoptosis-Inducing Galactolipids from a Cultured Marine Diatom, Phaeodactylum tricornutum

Andrianasolo, Eric H., Haramaty, Liti, Vardi, Assaf, White, Eileen, Lutz, Richard, Falkowski, Paul

Journal:

Journal of Natural Products

Year:

2008

Language:

english

File:

PDF, 203 KB

english, 2008

22

DddD Is a CoA-Transferase/Lyase Producing Dimethyl Sulfide in the Marine Environment

Alcolombri, Uria, Laurino, Paola, Lara-Astiaso, Pedro, Vardi, Assaf, Tawfik, Dan S.

Journal:

Year:

2014

Language:

english

File:

PDF, 178 KB

english, 2014

23

Hijacking of an autophagy-like process is critical for the life cycle of a DNA virus infecting oceanic algal blooms

Schatz, Daniella, Shemi, Adva, Rosenwasser, Shilo, Sabanay, Helena, Wolf, Sharon G., Ben-Dor, Shifra, Vardi, Assaf

Journal:

New Phytologist

Year:

2014

Language:

english

File:

PDF, 1.27 MB

english, 2014

24

Zooplankton May Serve as Transmission Vectors for Viruses Infecting Algal Blooms in the Ocean

Frada, Miguel José, Schatz, Daniella, Farstey, Viviana, Ossolinski, Justin E., Sabanay, Helena, Ben-Dor, Shifra, Koren, Ilan, Vardi, Assaf

Journal:

Current Biology

Year:

2014

Language:

english

File:

PDF, 1.36 MB

english, 2014

25

The inorganic carbon-concentrating mechanism in cyanobacteria: induction and ecological significance

Kaplan, Aaron, Ronen-Tarazi, Michal, Zer, Hagit, Schwarz, Rakefet, Tchernov, Dan, Bonfil, David J, Schatz, Daniella, Vardi, Assaf, Hassidim, Miriam, Reinhold, Leonora

Journal:

Canadian Journal of Botany

Year:

1998

Language:

english

File:

PDF, 142 KB

english, 1998

26

Vortical ciliary flows actively enhance mass transport in reef corals

Shapiro, Orr H., Fernandez, Vicente I., Garren, Melissa, Guasto, Jeffrey S., Debaillon-Vesque, François P., Kramarsky-Winter, Esti, Vardi, Assaf, Stocker, Roman

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 2.16 MB

english, 2014

27

Novel molecular determinants of viral susceptibility and resistance in the lipidome of E miliania huxleyi

Fulton, James M., Fredricks, Helen F., Bidle, Kay D., Vardi, Assaf, Kendrick, B. Jacob, DiTullio, Giacomo R., Van Mooy, Benjamin A. S.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 578 KB

english, 2014

28

Elucidating the composition and conservation of the autophagy pathway in photosynthetic eukaryotes

Shemi, Adva, Ben-Dor, Shifra, Vardi, Assaf

Journal:

Year:

2015

Language:

english

File:

PDF, 4.45 MB

english, 2015

29

Early perturbation in mitochondria redox homeostasis in response to environmental stress predicts cell fate in diatoms

van Creveld, Shiri Graff, Rosenwasser, Shilo, Schatz, Daniella, Koren, Ilan, Vardi, Assaf

Journal:

The ISME Journal

Year:

2015

Language:

english

File:

PDF, 2.31 MB

english, 2015

30

Infection of phytoplankton by aerosolized marine viruses

Sharoni, Shlomit, Trainic, Miri, Schatz, Daniella, Lehahn, Yoav, Flores, Michel J., Bidle, Kay D., Ben-Dor, Shifra, Rudich, Yinon, Koren, Ilan, Vardi, Assaf

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.41 MB

english, 2015

31

Macrophage Infiltration into Omental Versus Subcutaneous Fat across Different Populations: Effect of Regional Adiposity and the Comorbidities of Obesity

Harman-Boehm, Ilana, Blüher, Matthias, Redel, Henry, Sion-Vardy, Netta, Ovadia, Shira, Avinoach, Eliezer, Shai, Iris, Klöting, Nora, Stumvoll, Michael, Bashan, Nava, Rudich, Assaf

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2007

Language:

english

File:

PDF, 228 KB

english, 2007

32

Algal viruses hitchhiking on zooplankton across phytoplankton blooms

Frada, Miguel J, Vardi, Assaf

Journal:

Communicative & Integrative Biology

Year:

2015

Language:

english

File:

PDF, 521 KB

english, 2015

33

Modulation of host ROS metabolism is essential for viral infection of a bloom-forming coccolithophore in the ocean

Sheyn, Uri, Rosenwasser, Shilo, Ben-Dor, Shifra, Porat, Ziv, Vardi, Assaf

Journal:

The ISME Journal

Year:

2016

Language:

english

File:

PDF, 2.10 MB

english, 2016

34

Cell signaling in marine diatoms

Journal:

Communicative & Integrative Biology

Year:

2008

Language:

english

File:

PDF, 397 KB

english, 2008

35

Viral serine palmitoyltransferase induces metabolic switch in sphingolipid biosynthesis and is required for infection of a marine alga

Ziv, Carmit, Malitsky, Sergey, Othman, Alaa, Ben-Dor, Shifra, Wei, Yu, Zheng, Shuning, Aharoni, Asaph, Hornemann, Thorsten, Vardi, Assaf

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 978 KB

english, 2016

36

Inhibition of growth and photosynthesis of the dinoflagellate Peridinium gatunense by Microcystis sp. (cyanobacteria): A novel allelopathic mechanism

Sukenik, Assaf, Eshkol, Rachel, Livne, Alexander, Hadas, Ora, Rom, Meir, Tchernov, Dani, Vardi, Assaf, Kaplan, Aaron

Journal:

Limnology and Oceanography

Year:

2002

Language:

english

File:

PDF, 692 KB

english, 2002

37

Osteopontin's N-terminal fragment uncovers carotid plaque stability associated with statin or antiplatelet therapy in hypertensive patients

Wolak, Talya, Hamias, Rachel, Volvich, Liobov, Paran, Esther, Sion-Vardi, Neta, Novack, Victor, Szendro, Gabriel, Greenberg, Georg, Rudich, Assaf

Journal:

Journal of the American Society of Hypertension

Year:

2015

Language:

english

File:

PDF, 31 KB

english, 2015

38

Viral infection of the marine alga Emiliania huxleyi triggers lipidome remodeling and induces the production of highly saturated triacylglycerol

Malitsky, Sergey, Ziv, Carmit, Rosenwasser, Shilo, Zheng, Shuning, Schatz, Daniella, Porat, Ziv, Ben-Dor, Shifra, Aharoni, Asaph, Vardi, Assaf

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 659 KB

english, 2016

39

Phosphorus starvation induces membrane remodeling and recycling in Emiliania huxleyi

Shemi, Adva, Schatz, Daniella, Fredricks, Helen F., Van Mooy, Benjamin A. S., Porat, Ziv, Vardi, Assaf

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 2.92 MB

english, 2016

40

Virocell Metabolism: Metabolic Innovations During Host–Virus Interactions in the Ocean

Rosenwasser, Shilo, Ziv, Carmit, Creveld, Shiri Graff van, Vardi, Assaf

Journal:

Trends in Microbiology

Year:

2016

Language:

english

File:

PDF, 2.32 MB

english, 2016

41

Chronic iron limitation confers transient resistance to oxidative stress in marine diatoms

Graff van Creveld, Shiri, Rosenwasser, Shilo, Levin, Yishai, Vardi, Assaf

Journal:

PLANT PHYSIOLOGY

Year:

2016

Language:

english

File:

PDF, 1.69 MB

english, 2016

42

A coral-on-a-chip microfluidic platform enabling live-imaging microscopy of reef-building corals

Shapiro, Orr H., Kramarsky-Winter, Esti, Gavish, Assaf R., Stocker, Roman, Vardi, Assaf

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.93 MB

english, 2016

43

Assigning the Algal Source of Dimethylsulfide Using a Selective Lyase Inhibitor

Alcolombri, Uria, Lei, Lei, Meltzer, Diana, Vardi, Assaf, Tawfik, Dan S.

Journal:

ACS Chemical Biology

Year:

2017

Language:

english

File:

PDF, 1.51 MB

english, 2017

44

Dispersion/dilution enhances phytoplankton blooms in low-nutrient waters

Lehahn, Yoav, Koren, Ilan, Sharoni, Shlomit, d’Ovidio, Francesco, Vardi, Assaf, Boss, Emmanuel

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.44 MB

english, 2017

45

Efficient and accurate translation initiation directed by TISU involves RPS3 and RPS10e binding and differential eIF1A regulation

Haimov, Ora, Sinvani, Hadar, Martin, Franck, Ulitsky, Igor, Emmanuel, Rafi, Tamarkin-Ben-Harush, Ana, Vardy, Assaf, Dikstein, Rivka

Journal:

Molecular and Cellular Biology

Year:

2017

Language:

english

File:

PDF, 1.06 MB

english, 2017

46

Corrigendum: A coral-on-a-chip microfluidic platform enabling live-imaging microscopy of reef-building corals

Shapiro, Orr H., Kramarsky-Winter, Esti, Gavish, Assaf R., Stocker, Roman, Vardi, Assaf

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 131 KB

english, 2016

47

Nanoparticles target early-stage breast cancer metastasis in vivo

Goldman, Evgeniya, Zinger, Assaf, da Silva, Dana, Yaari, Zvi, Kajal, Ashima, Vardi-Oknin, Dikla, Goldfeder, Mor, Schroeder, Josh, Shainsky Roitman, Janna, Hershkovitz, Dov, Schroeder, Avi

Journal:

Year:

2017

Language:

english

File:

PDF, 1.47 MB

english, 2017

48

Communication via extracellular vesicles enhances viral infection of a cosmopolitan alga

Schatz, Daniella, Rosenwasser, Shilo, Malitsky, Sergey, Wolf, Sharon G., Feldmesser, Ester, Vardi, Assaf

Journal:

Nature Microbiology

Year:

2017

Language:

english

File:

PDF, 2.81 MB

english, 2017

49

Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export

Sheyn, Uri, Rosenwasser, Shilo, Lehahn, Yoav, Barak-Gavish, Noa, Rotkopf, Ron, Bidle, Kay D., Koren, Ilan, Schatz, Daniella, Vardi, Assaf

Journal:

The ISME Journal

Year:

2018

Language:

english

File:

PDF, 2.14 MB

english, 2018

50

Extracellular vesicles — new players in cell–cell communication in aquatic environments

Schatz, Daniella, Vardi, Assaf

Journal:

Current Opinion in Microbiology

Year:

2018

Language:

english

File:

PDF, 1.10 MB

english, 2018

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