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51

Identification of Independent Primary Tumors and Intrapulmonary Metastases Using DNA Rearrangements in Non-Small-Cell Lung Cancer

Murphy, S. J., Aubry, M.-C., Harris, F. R., Halling, G. C., Johnson, S. H., Terra, S., Drucker, T. M., Asiedu, M. K., Kipp, B. R., Yi, E. S., Peikert, T., Yang, P., Vasmatzis, G., Wigle, D. A.

Journal:

Journal of Clinical Oncology

Year:

2014

Language:

english

File:

PDF, 2.04 MB

english, 2014

52

Nanopore-Based Assay for Detection of Methylation in Double-Stranded DNA Fragments

Shim, Jiwook, Kim, Younghoon, Humphreys, Gwendolyn I., Nardulli, Ann M., Kosari, Farhad, Vasmatzis, George, Taylor, William R., Ahlquist, David A., Myong, Sua, Bashir, Rashid

Journal:

Year:

2015

Language:

english

File:

PDF, 1.33 MB

english, 2015

53

Somatic rearrangement of the TP63 gene preceding development of mycosis fungoides with aggressive clinical course

Chavan, R N, Bridges, A G, Knudson, R A, Ketterling, R P, Comfere, N, Wada, D A, Torres-Cabala, C, DiCaudo, D J, Vasmatzis, G, Pittelkow, M R, Feldman, A L

Journal:

Blood Cancer Journal

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

54

Activation of TAK1 by MYD88 L265P drives malignant B-cell Growth in non-Hodgkin lymphoma

Ansell, S M, Hodge, L S, Secreto, F J, Manske, M, Braggio, E, Price-Troska, T, Ziesmer, S, Li, Y, Johnson, S H, Hart, S N, Kocher, J-P A, Vasmatzis, G, Chanan-Kahn, A, Gertz, M, Fonseca, R, Dogan, A,

Journal:

Blood Cancer Journal

Year:

2014

Language:

english

File:

PDF, 957 KB

english, 2014

55

The Cistrome and Gene Signature of Androgen Receptor Splice Variants in Castration Resistant Prostate Cancer Cells

Lu, Ji, Lonergan, Peter E., Nacusi, Lucas P., Wang, Liguo, Schmidt, Lucy J., Sun, Zhifu, Van der Steen, Travis, Boorjian, Stephen A., Kosari, Farhad, Vasmatzis, George, Klee, George G., Balk, Steven P

Journal:

The Journal of Urology

Year:

2015

Language:

english

File:

PDF, 4.13 MB

english, 2015

56

Clinical Validation of a Haplotyping Method with Next-Generation Sequencing

Cradic, K. W., Murphy, S. J., Sikkink, R. A., Neuhauser, C., Vasmatzis, G., Grebe, S. K. G.

Journal:

Clinical Chemistry

Year:

2015

Language:

english

File:

PDF, 128 KB

english, 2015

57

Electrical characterization of micro-organisms using microfabricated devices

Chang, H., Ikram, A., Kosari, F., Vasmatzis, G., Bhunia, A., Bashir, R.

Journal:

Journal of Vacuum Science & Technology B Microelectronics and Nanometer Structures

Year:

2002

Language:

english

File:

PDF, 772 KB

english, 2002

58

The Ability of Biomarkers to Predict Systemic Progression in Men with High-Risk Prostate Cancer Treated Surgically Is Dependent on ERG Status

Karnes, R. J., Cheville, J. C., Ida, C. M., Sebo, T. J., Nair, A. A., Tang, H., Munz, J.-M., Kosari, F., Vasmatzis, G.

Journal:

Cancer Research

Year:

2010

Language:

english

File:

PDF, 920 KB

english, 2010

59

Bioinformatics Methods for Prioritizing Serum Biomarker Candidates

Klee, E. W., Finlay, J. A., McDonald, C., Attewell, J. R., Hebrink, D., Dyer, R., Love, B., Vasmatzis, G., Li, T. M., Beechem, J. M., Klee, G. G.

Journal:

Clinical Chemistry

Year:

2006

Language:

english

File:

PDF, 1.10 MB

english, 2006

60

Induction of Prostatic Intraepithelial Neoplasia and Modulation of Androgen Receptor by ETS Variant 1/ETS-Related Protein 81

Shin, S., Kim, T.-D., Jin, F., van Deursen, J. M., Dehm, S. M., Tindall, D. J., Grande, J. P., Munz, J.-M., Vasmatzis, G., Janknecht, R.

Journal:

Cancer Research

Year:

2009

Language:

english

File:

PDF, 631 KB

english, 2009

61

Chromosomal rearrangements and copy number abnormalities of TP63 correlate with p63 protein expression in lung adenocarcinoma

Aubry, Marie-Christine, Roden, Anja, Murphy, Stephen J, Vasmatzis, George, Johnson, Sarah H, Harris, Faye R, Halling, Geoffrey, Knudson, Ryan A, Ketterling, Rhett P, Feldman, Andrew L

Journal:

Modern Pathology

Year:

2015

Language:

english

File:

PDF, 538 KB

english, 2015

62

Quantitating tissue specificity of human genes to facilitate biomarker discovery

Vasmatzis, G., Klee, E. W., Kube, D. M., Therneau, T. M., Kosari, F.

Journal:

Year:

2007

Language:

english

File:

PDF, 1003 KB

english, 2007

63

A Systematic Method for Selection of Promising Serum Protein Biomarkers to Improve Prostate Cancer (PCa1) Detection

Finlay, J. A., Klee, E. W., McDonald, C., Attewell, J. R., Hebrink, D., Dyer, R., Love, B., Vasmatzis, G., Li, T. M., Beechem, J. M., Klee, G. G.

Journal:

Clinical Chemistry

Year:

2006

Language:

english

File:

PDF, 1.10 MB

english, 2006

64

Identification of Prognostic Biomarkers for Prostate Cancer

Kosari, F., Munz, J. M. A., Savci-Heijink, C. D., Spiro, C., Klee, E. W., Kube, D. M., Tillmans, L., Slezak, J., Karnes, R. J., Cheville, J. C., Vasmatzis, G.

Journal:

Clinical Cancer Research

Year:

2008

Language:

english

File:

PDF, 636 KB

english, 2008

65

Mate Pair Sequencing of Whole-Genome-Amplified DNA Following Laser Capture Microdissection of Prostate Cancer

Murphy, S. J., Cheville, J. C., Zarei, S., Johnson, S. H., Sikkink, R. A., Kosari, F., Feldman, A. L., Eckloff, B. W., Karnes, R. J., Vasmatzis, G.

Journal:

Year:

2012

Language:

english

File:

PDF, 479 KB

english, 2012

66

Genome-wide analysis reveals recurrent structural abnormalities of TP63 and other p53-related genes in peripheral T-cell lymphomas

Vasmatzis, G., Johnson, S. H., Knudson, R. A., Ketterling, R. P., Braggio, E., Fonseca, R., Viswanatha, D. S., Law, M. E., Kip, N. S., Ozsan, N., Grebe, S. K., Frederick, L. A., Eckloff, B. W., Thomps

Journal:

Year:

2012

Language:

english

File:

PDF, 721 KB

english, 2012

67

High expression of a specific T-cell receptor transcript in epithelial cells of the prostate

Essand, M., Vasmatzis, G., Brinkmann, U., Duray, P., Lee, B., Pastan, I.

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 386 KB

english, 1999

68

Lineage Relationship of Gleason Patterns in Gleason Score 7 Prostate Cancer

Kovtun, I. V., Cheville, J. C., Murphy, S. J., Johnson, S. H., Zarei, S., Kosari, F., Sukov, W. R., Karnes, R. J., Vasmatzis, G.

Journal:

Cancer Research

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

69

Gene Panel Model Predictive of Outcome in Men at High-Risk of Systemic Progression and Death From Prostate Cancer After Radical Retropubic Prostatectomy

Cheville, J. C., Karnes, R. J., Therneau, T. M., Kosari, F., Munz, J.-M., Tillmans, L., Basal, E., Rangel, L. J., Bergstralh, E., Kovtun, I. V., Savci-Heijink, C.D., Klee, E. W., Vasmatzis, G.

Journal:

Journal of Clinical Oncology

Year:

2008

Language:

english

File:

PDF, 195 KB

english, 2008

70

Truncated ERG Oncoproteins from TMPRSS2-ERG Fusions Are Resistant to SPOP-Mediated Proteasome Degradation

Year:

2015

Language:

english

File:

PDF, 5.03 MB

english, 2015

71

Heterogeneity of programmed cell death-ligand 1 expression in multifocal lung cancer

Mansfield, A. S., Murphy, S. J., Peikert, T., Yi, E. S., Vasmatzis, G., Wigle, D. A., Aubry, M. C.

Journal:

Clinical Cancer Research

Year:

2015

Language:

english

File:

PDF, 6.82 MB

english, 2015

72

70 Heterogeneity of programmed death-ligand 1 expression in multifocal lung cancer

Mansfield, A.S., Murphy, S., Peikert, T., Yi, J., Vasmatzis, G., Wigle, D., Aubry, M.C.

Journal:

Year:

2016

Language:

english

File:

PDF, 69 KB

english, 2016

73

Molecular cytology genotyping of primary and metastatic GI stromal tumors by using a custom 2-gene targeted next-generation sequencing panel with therapeutic intent

Gleeson, Ferga C., Kerr, Sarah E., Kipp, Benjamin R., Voss, Jesse S., Minot, Douglas M., Tu, Zheng Jin, Henry, Michael R., Vasmatzis, George, Cheville, John C., Lazaridis, Konstantinos N., Levy, Micha

Journal:

Gastrointestinal Endoscopy

Year:

2016

Language:

english

File:

PDF, 939 KB

english, 2016

74

A Microfabricated Device for the Characterization of Biological Entities

Chang, H., Ikram, A., Young, M., Kosari, F., Vasmatzis, G., Bhunia, A., Bashir, R.

Journal:

MRS Proceedings

Year:

2001

Language:

english

File:

PDF, 237 KB

english, 2001

75

Su1277 Tumor Heterogeneity Assessment of EUS FNA Cytology to Matched Surgical Pathology via Targeted Next Generation Sequencing in a Pancreatic and Ampullary Adenocarcinoma Population

Gleeson, Ferga, Kipp, Benjamin R., Voss, Jesse, Minot, Douglas, Tu, ZhengJin, Kerr, Sarah, Henry, Michael, Cheville, John, Lazaridis, Konstantinos, Levy, Michael J., Vasmatzis, George

Journal:

Gastrointestinal Endoscopy

Year:

2016

Language:

english

File:

PDF, 94 KB

english, 2016

76

PD38-06 RISK SCORE PREDICTION MODEL FOR BLADDER CANCER USING COMBINATION OF IMMUNOSCORE AND PATHOLOGICAL STAGING

Donkena, Krishna Vanaja, Vasmatzis, George, Thapa, Prabin, Tarrell, Robert R., Frank, Igor, Boorjian, Stephen A., Karnes, R. Jeffrey, Cheville, John C.

Journal:

The Journal of Urology

Year:

2016

Language:

english

File:

PDF, 595 KB

english, 2016

77

Heterogeneity of programmed cell death-ligand 1 expression in lung cancer

Mansfield, Aaron, Murphy, Stephen, Peikert, Tobias, Yi, Joanne, Vasmatzis, George, Wigle, Dennis, Aubry, Marie Christine

Journal:

Journal of Thoracic Oncology

Year:

2016

Language:

english

File:

PDF, 88 KB

english, 2016

78

Sa1355 Molecular Cytology Genotyping of Primary and Metastatic Gastrointestinal Stromal Tumors Using Targeted Next Generation Sequencing to Guide Therapeutic Decision Making

Gleeson, Ferga, Kipp, Benjamin R., Voss, Jesse, Minot, Douglas, Tu, ZhengJin, Kerr, Sarah, Henry, Michael, Vasmatzis, George, Cheville, John, Lazaridis, Konstantinos, Levy, Michael J.

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 374 KB

english, 2016

79

Sa1455 KRAS Mutant Subtype Assessment of Pancreatic and Ampullary Adenocarcinoma by EUS FNA Molecular Cytology Targeted Next Generation Sequencing

Gleeson, Ferga, Kipp, Benjamin R., Voss, Jesse, Minot, Douglas, Tu, ZhengJin, Kerr, Sarah, Henry, Michael, Vasmatzis, George, Cheville, John, Lazaridis, Konstantinos, Levy, Michael J.

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 540 KB

english, 2016

80

Tu1479 The Potential of an Endoscopic Ultrasound Fine Needle Aspiration Biomarker Stratification Strategy Using Targeted Next-Generation Sequencing for Patients With Pancreatic and Ampullary Adenocarcinoma

Gleeson, Ferga, Kipp, Benjamin R., Voss, Jesse, Minot, Douglas, Tu, ZhengJin, Kerr, Sarah, Henry, Michael, Vasmatzis, George, Cheville, John, Lazaridis, Konstantinos, Levy, Michael J.

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 868 KB

english, 2016

81

Custom Gene Capture and Next-Generation Sequencing to Resolve Discordant ALK Status by FISH and IHC in Lung Adenocarcinoma

Jang, Jin Sung, Wang, Xiaoke, Vedell, Peter T., Wen, Ji, Zhang, Jinghui, Ellison, David W., Evans, Jared M., Johnson, Sarah H., Yang, Ping, Sukov, William R., Oliveira, Andre M., Vasmatzis, George, Su

Journal:

Journal of Thoracic Oncology

Year:

2016

Language:

english

File:

PDF, 1.11 MB

english, 2016

82

Colorectal Cancer with Residual Polyp of Origin: A Model of Malignant Transformation

Druliner, Brooke R., Rashtak, Shahrooz, Ruan, Xiaoyang, Bae, Taejeong, Vasmatzis, Nikolaos, O’Brien, Daniel, Johnson, Ruth, Felmlee-Devine, Donna, Washechek-Aletto, Jill, Basu, Nivedita, Liu, Hongfang

Journal:

Translational Oncology

Year:

2016

Language:

english

File:

PDF, 897 KB

english, 2016

83

Common Fragile Sites and Extremely Large are Targets for Human Papillomavirus Integrations and Chromosome Rearrangements in Oropharyngeal Squamous Cell Carcinoma

Gao, Ge, Johnson, Sarah H., Vasmatzis, George, Pauley, Christina E., Tombers, Nicole M., Kasperbauer, Jan L., Smith, David I.

Journal:

Genes, Chromosomes and Cancer

Year:

2016

Language:

english

File:

PDF, 1.94 MB

english, 2016

84

A Comparison of Whole Genome Mate Pair Sequencing (MPseq) with Karyotype and FISH for Breakpoint Detection in Hematologic Cancers

Johnson, Sarah H., Smoley, Stephanie A., Kearney, Hutton M., Sukov, William R., Jenkins, Robert B., Vasmatzis, George

Journal:

Cancer Genetics

Year:

2016

Language:

english

File:

PDF, 54 KB

english, 2016

85

Molecular Characterization of Recurrent Partial Gene Duplications by Whole Genome Mate-Pair Sequencing (MPseq) to Improve the Accuracy of Chromosomal Microarray Reporting

Porath, Binu, Johnson, Sarah H., Smoley, Stephanie A., Pitel, Beth, Gliem, Troy, Vasmatzis, George, Kearney, Hutton M., Hoppman, Nicole L., Thorland, Erik C.

Journal:

Cancer Genetics

Year:

2016

Language:

english

File:

PDF, 59 KB

english, 2016

86

Sa1521 SMAD4 Biomarker Stratification Strategy via Endoscopic Ultrasound Fine Needle Aspiration Using Targeted Next-Generation Sequencing for Patients With Pancreatic and Ampullary Adenocarcinoma

Gleeson, Ferga, Kipp, Benjamin R., Voss, Jesse, Minot, Douglas, Tu, ZhengJin, Kerr, Sarah, Henry, Michael, Vasmatzis, George, Cheville, John, Lazaridis, Konstantinos, Levy, Michael J.

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 923 KB

english, 2016

87

Whole-Genome Mate-Pair Sequencing (MPseq) Improves Genomic Characterization of Patients with Hematologic Malignancies

Smoley, Stephanie A., Johnson, Sarah H., Vasmatzis, George, Kearney, Hutton M., Ketterling, Rhett P., Jenkins, Robert B.

Journal:

Cancer Genetics

Year:

2016

Language:

english

File:

PDF, 63 KB

english, 2016

88

What's Next in Cytogenetics: Molecular Characterization of De Novo Apparently Balanced Chromosomal Rearrangements to Assess Pathogenicity by Whole Genome Mate Pair Sequencing

Marcou, Cherisse A., Halling, Geoffrey, Johnson, Sarah H., Smoley, Stephanie, Pearce, Kathryn, Vasmatzis, George, Thorland, Erik C., Aypar, Umut, Hoppman, Nicole L.

Journal:

Cancer Genetics

Year:

2016

Language:

english

File:

PDF, 56 KB

english, 2016

89

Characterization of a Novel Inverted Tandem Duplication by Mate Pair Sequencing (MPseq)

Baughn, Linda, Essendrup, Anna, Smoley, Stephanie A., Porath, Binu, Johnson, Sarah H., Vasmatzis, George, Jackson, Daniel, Kearney, Hutton

Journal:

Cancer Genetics

Year:

2016

Language:

english

File:

PDF, 60 KB

english, 2016

90

Genome-wide analysis reveals recurrent structural abnormalities of TP63 and other p53-related genes in peripheral T-cell lymphomas

Vasmatzis, George, Johnson, Sarah H, Knudson, Ryan A, Ketterling, Rhett P, Braggio, Esteban, Fonseca, Rafael, Grebe, Stefan K, Frederick, Lori A, Eckloff, Bruce W, Viswanatha, David S, Law, Mark E, Ki

Year:

2012

Language:

english

File:

PDF, 695 KB

english, 2012

91

Mantle cell lymphoma with a novel t(11;12)(q13;p11.2): A proposed alternative mechanism of CCND1 upregulation

Menke, Joshua R., Vasmatzis, George, Murphy, Stephen, Yang, Lin, Menke, David M., Tun, Han W., King, Rebecca L., Smoley, Stephanie A., Ketterling, Rhett P., Sukov, William R.

Journal:

Human Pathology

Year:

2017

Language:

english

File:

PDF, 417 KB

english, 2017

92

One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin

Abyzov, Alexej, Tomasini, Livia, Zhou, Bo, Vasmatzis, Nikolaos, Coppola, Gianfilippo, Amenduni, Mariangela, Pattni, Reenal, Wilson, Michael, Gerstein, Mark, Weissman, Sherman, Urban, Alexander E., Vac

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 2.93 MB

english, 2017

93

TFEB-VEGFA (6p21.1) co-amplified renal cell carcinoma: a distinct entity with potential implications for clinical management

Gupta, Sounak, Johnson, Sarah H, Vasmatzis, George, Porath, Binu, Rustin, Jeannette G, Rao, Priya, Costello, Brian A, Leibovich, Bradley C, Thompson, R Houston, Cheville, John C, Sukov, William R

Journal:

Modern Pathology

Year:

2017

Language:

english

File:

PDF, 4.28 MB

english, 2017

94

A novel cytogenetic and molecular characterization of renal metanephric adenoma: Identification of partner genes involved in translocation t(9;15)(p24;q24)

Catic, Aida, Kurtovic-Kozaric, Amina, Johnson, Sarah H., Vasmatzis, George, Pins, Michael R., Kogan, Jillene

Journal:

Cancer Genetics

Year:

2017

Language:

english

File:

PDF, 1.29 MB

english, 2017

95

OA05.02 Anti-Tumor Immunity is a Key Determinant of SCLC Survivorship

Kosari, Farhad, Terra, Simone, Nasir, Aqsa, Muppa, Prasuna, Aubry, Marie Christine, Yi, Joanne, Janaki, Nafiseh, Mansfield, Aaron, De Andrade, Mariza, Yang, Ping, Vasmatzis, George, Van Keulen, Virgin

Journal:

Journal of Thoracic Oncology

Year:

2017

Language:

english

File:

PDF, 129 KB

english, 2017

96

Genomic rearrangements in sporadic lymphangioleiomyomatosis: an evolving genetic story

Murphy, Stephen J, Terra, Simone B, Harris, Faye R, Nasir, Aqsa, Voss, Jesse S, Smadbeck, James B, Johnson, Sarah H, Serla, Vishnu, Ryu, Jay H, Yi, Eunhee S, Kipp, Benjamin R, Vasmatzis, George, Carmo

Journal:

Modern Pathology

Year:

2017

Language:

english

File:

PDF, 2.50 MB

english, 2017

97

Microbial Antigens Stimulate Metalloprotease-7 Secretion in Human B-Lymphocytes Using mTOR-Dependent and Independent Pathways

Ali, Mohamed F., Dasari, Harika, Van Keulen, Virginia P., Cornec, Divi, Vasmatzis, George, Peikert, Tobias, Carmona, Eva M.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.30 MB

english, 2017

98

Development of a Mate Pair Lineage Assay to Ascertain Relation of Tumors

Rustin, Jeannette, Johnson, Sarah, Sukov, William, Vasmatzis, George

Journal:

Cancer Genetics

Year:

2017

Language:

english

File:

PDF, 54 KB

english, 2017

99

Retention of Interstitial Genes between TMPRSS2 and ERG Is Associated with Low-Risk Prostate Cancer

Murphy, Stephen J., Kosari, Farhad, Karnes, R. Jeffrey, Nasir, Aqsa, Johnson, Sarah H., Gaitatzes, Athanasios G., Smadbeck, James B., Rangel, Laureano J., Vasmatzis, George, Cheville, John C.

Journal:

Cancer Research

Year:

2017

Language:

english

File:

PDF, 1.09 MB

english, 2017

100

Genome U-Plot: A Whole Genome Visualization

Gaitatzes, Athanasios, Johnson, Sarah H, Smadbeck, James B, Vasmatzis, George

Journal:

Year:

2017

Language:

english

File:

PDF, 886 KB

english, 2017

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