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1

Sparse graphical models for exploring gene expression data

Adrian Dobra, Chris Hans, Beatrix Jones, Joseph R. Nevins, Guang Yao, Mike West

Journal:

Journal of Multivariate Analysis

Year:

2004

Language:

english

File:

PDF, 452 KB

english, 2004

2

Bayesian analysis of binary prediction tree models for retrospectively sampled outcomes

Pittman, J., Huang, E., Nevins, J., Wang, Q., West, M.

Journal:

Year:

2004

Language:

english

File:

PDF, 150 KB

english, 2004

3

Estriol serum levels in new and chronic users of vaginal estriol cream: A prospective observational study

West, Nevine I. D., Day, Ric O., Hiley, Basia, White, ChrisÂ , Wright, Mike, Moore, Kate H.

Journal:

Neurourology and Urodynamics

Year:

2020

File:

PDF, 1.01 MB

2020

4

High-Dimensional Sparse Factor Modeling: Applications in Gene Expression Genomics

Carlos M. Carvalho, Jeffrey Chang, Joseph E. Lucas, Joseph R. Nevins, Quanli Wang and Mike West

Journal:

Journal of the American Statistical Association

Year:

2008

Language:

english

File:

PDF, 3.50 MB

english, 2008

5

Enrichment ofGeobacterSpecies in Response to Stimulation of Fe(III) Reduction in Sandy Aquifer Sediments

O.L. Snoeyenbos-West, K.P. Nevin, R.T. Anderson, D.R. Lovley

Journal:

Microbial Ecology

Year:

2000

Language:

english

File:

PDF, 2.27 MB

english, 2000

6

Identification of genes associated with ovarian cancer metastasis using microarray expression analysis

J.M. LANCASTER, H.K. DRESSMAN, J.P. CLARKE, R.A. SAYER, M.A. MARTINO, J.M. CRAGUN, A.H. HENRIOTT, J. GRAY, R. SUTPHEN, A. ELAHI, R.S. WHITAKER, M. WEST, J.R. MARKS, J.R. NEVINS, A. BERCHUCK

Journal:

International Journal of Gynecological Cancer

Year:

2006

Language:

english

File:

PDF, 297 KB

english, 2006

7

Gene expression phenotypic models that predict the activity of oncogenic pathways

Huang, Erich, Ishida, Seiichi, Pittman, Jennifer, Dressman, Holly, Bild, Andrea, Kloos, Mark, D'Amico, Mark, Pestell, Richard G, West, Mike, Nevins, Joseph R

Journal:

Nature Genetics

Year:

2003

Language:

english

File:

PDF, 707 KB

english, 2003

8

Prediction of optimal versus suboptimal cytoreduction of advanced-stage serous ovarian cancer with the use of microarrays

Andrew Berchuck, Edwin S. Iversen, Johnathan M. Lancaster, Holly K. Dressman, Mike West, Joseph R. Nevins, Jeffrey R. Marks

Journal:

American Journal of Obstetrics and Gynecology

Year:

2004

Language:

english

File:

PDF, 641 KB

english, 2004

9

An overview of genomic data analysis

Erich S. Huang, Joseph R. Nevins, Mike West, Paul C. Kuo

Journal:

Year:

2004

Language:

english

File:

PDF, 49 KB

english, 2004

10

An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer

Min Xu, Ming-Chih J Kao, Juan Nunez-Iglesias, Joseph R Nevins, Mike West, Xianghong Jasmine Zhou

Journal:

Year:

2008

Language:

english

File:

PDF, 511 KB

english, 2008

11

A Genomic Strategy to Elucidate Modules of Oncogenic Pathway Signaling Networks

Jeffrey T. Chang, Carlos Carvalho, Seiichi Mori, Andrea H. Bild, Michael L. Gatza, Quanli Wang, Joseph E. Lucas, Anil Potti, Phillip G. Febbo, Mike West, Joseph R. Nevins

Journal:

Year:

2009

Language:

english

File:

PDF, 1.51 MB

english, 2009

12

Gene expression predictors of breast cancer outcomes

Erich Huang, Skye H Cheng, Holly Dressman, Jennifer Pittman, Mei Hua Tsou, Cheng Fang Horng, Andrea Bild, Edwin S Iversen, Ming Liao, Chii Ming Chen, Mike West, Joseph R Nevins, Andrew T Huang

Journal:

Year:

2003

Language:

english

File:

PDF, 106 KB

english, 2003

13

O-122 Gene expression signatures for prognosis in NSCLC, coupled with signatures of oncogenic pathway deregulation, provide a novel approach for selection of molecular targets

Petersen, R., Bild, A., Dressman, H., Joshi, M., Conlon, D., West, M., Nevins, J., Harpole, D.

Journal:

Year:

2005

Language:

english

File:

PDF, 343 KB

english, 2005

14

Sulfur oxidation to sulfate coupled with electron transfer to electrodes by Desulfuromonas strain TZ1

Zhang, T., Bain, T. S., Barlett, M. A., Dar, S. A., Snoeyenbos-West, O. L., Nevin, K. P., Lovley, D. R.

Journal:

Microbiology (Society for General Microbiology)

Year:

2014

Language:

english

File:

PDF, 634 KB

english, 2014

15

An Integrated Genomic-Based Approach to Individualized Treatment of Patients With Advanced-Stage Ovarian Cancer

Dressman, H. K., Berchuck, A., Chan, G., Zhai, J., Bild, A., Sayer, R., Cragun, J., Clarke, J., Whitaker, R. S., Li, L., Gray, J., Marks, J., Ginsburg, G. S., Potti, A., West, M., Nevins, J. R., Lanca

Journal:

Journal of Clinical Oncology

Year:

2007

Language:

english

File:

PDF, 309 KB

english, 2007

16

Electrosynthesis of Organic Compounds from Carbon Dioxide Is Catalyzed by a Diversity of Acetogenic Microorganisms

Nevin, K. P., Hensley, S. A., Franks, A. E., Summers, Z. M., Ou, J., Woodard, T. L., Snoeyenbos-West, O. L., Lovley, D. R.

Journal:

Applied and Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

17

Going Wireless: Fe(III) Oxide Reduction without Pili by Geobacter sulfurreducens Strain JS-1

Smith, J. A., Tremblay, P.-L., Shrestha, P. M., Snoeyenbos-West, O. L., Franks, A. E., Nevin, K. P., Lovley, D. R.

Journal:

Applied and Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

18

Enrichment of Geobacter Species in Response to Stimulation of Fe(III) Reduction in Sandy Aquifer Sediments

O. L. Snoeyenbos-West, K. P. Nevin, R. T. Anderson and D. R. Lovley

Journal:

Microbial Ecology

Year:

2000

Language:

english

File:

PDF, 1.17 MB

english, 2000

19

Aromatic Amino Acids Required for Pili Conductivity and Long-Range Extracellular Electron Transport in Geobacter sulfurreducens

Vargas, M., Malvankar, N. S., Tremblay, P.-L., Leang, C., Smith, J. A., Patel, P., Synoeyenbos-West, O., Nevin, K. P., Lovley, D. R.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.45 MB

english, 2013

20

Recent Developments in the Non-surgical Management of Pelvic Organ Prolapse

Nèvine I. D. te West,Kate H. Moore

Journal:

Current Obstetrics and Gynecology Reports

Year:

2014

Language:

english

File:

PDF, 406 KB

english, 2014

21

Urinary tract infection in gynaecology and obstetrics

te West, Nevine I.D., Moore, Kate H.

Journal:

Obstetrics, Gynaecology & Reproductive Medicine

Year:

2014

Language:

english

File:

PDF, 475 KB

english, 2014

22

High-Dimensional Sparse Factor Modeling: Applications in Gene Expression Genomics

Carvalho, Carlos M., Chang, Jeffrey, Lucas, Joseph E., Nevins, Joseph R., Wang, Quanli, West, Mike

Journal:

Journal of the American Statistical Association

Year:

2008

Language:

english

File:

PDF, 2.11 MB

english, 2008

23

Predicting the clinical status of human breast cancer by using gene expression profiles

West, M., Blanchette, C., Dressman, H., Huang, E., Ishida, S., Spang, R., Zuzan, H., Olson, J. A., Marks, J. R., Nevins, J. R.

Journal:

Proceedings of the National Academy of Sciences

Year:

2001

Language:

english

File:

PDF, 1.65 MB

english, 2001

24

Molecular evidence for arterial repair in atherosclerosis

Karra, R., Vemullapalli, S., Dong, C., Herderick, E. E., Song, X., Slosek, K., Nevins, J. R., West, M., Goldschmidt-Clermont, P. J., Seo, D.

Journal:

Proceedings of the National Academy of Sciences

Year:

2005

Language:

english

File:

PDF, 744 KB

english, 2005

25

Role for E2F in Control of Both DNA Replication and Mitotic Functions as Revealed from DNA Microarray Analysis

Ishida, S., Huang, E., Zuzan, H., Spang, R., Leone, G., West, M., Nevins, J. R.

Journal:

Molecular and Cellular Biology

Year:

2001

Language:

english

File:

PDF, 547 KB

english, 2001

26

DIG--a system for gene annotation and functional discovery

DeLong, M., Yao, G., Wang, Q., Dobra, A., Black, E. P., Chang, J. T., Bild, A., West, M., Nevins, J. R., Dressman, H.

Journal:

Year:

2005

Language:

english

File:

PDF, 285 KB

english, 2005

27

Towards integrated clinico-genomic models for personalized medicine: combining gene expression signatures and clinical factors in breast cancer outcomes prediction

Nevins, J. R., Huang, E. S., Dressman, H., Pittman, J., Huang, A. T., West, M.

Journal:

Human Molecular Genetics

Year:

2003

Language:

english

File:

PDF, 175 KB

english, 2003

28

Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes

Pittman, J., Huang, E., Dressman, H., Horng, C.-F., Cheng, S. H., Tsou, M.-H., Chen, C.-M., Bild, A., Iversen, E. S., Huang, A. T., Nevins, J. R., West, M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2004

Language:

english

File:

PDF, 632 KB

english, 2004

29

Distinctions in the specificity of E2F function revealed by gene expression signatures

Black, E. P., Hallstrom, T., Dressman, H. K., West, M., Nevins, J. R.

Journal:

Proceedings of the National Academy of Sciences

Year:

2005

Language:

english

File:

PDF, 448 KB

english, 2005

30

The Genomic Analysis of Lactic Acidosis and Acidosis Response in Human Cancers

Chen, Julia Ling-Yu, Lucas, Joseph E., Schroeder, Thies, Mori, Seiichi, Wu, Jianli, Nevins, Joseph, Dewhirst, Mark, West, Mike, Chi, Jen-Tsan, Gibson, Greg

Journal:

Year:

2008

Language:

english

File:

PDF, 2.23 MB

english, 2008

31

Protozoan grazing reduces the current output of microbial fuel cells

Holmes, Dawn E., Nevin, Kelly P., Snoeyenbos-West, Oona L., Woodard, Trevor L., Strickland, Justin N., Lovley, Derek R.

Journal:

Bioresource Technology

Year:

2015

Language:

english

File:

PDF, 845 KB

english, 2015

32

Aromatic Amino Acids Required for Pili Conductivity and Long-Range Extracellular Electron Transport in Geobacter sulfurreducens

Vargas, M., Malvankar, N. S., Tremblay, P.-L., Leang, C., Smith, J. A., Patel, P., Snoeyenbos-West, O., Nevin, K. P., Lovley, D. R.

Journal:

Year:

2013

Language:

english

File:

PDF, 48 KB

english, 2013

33

Gene Expression Phenotypes of Oncogenic Signaling Pathways

Huang, Erich S., Black, Esther P., Dressman, Holly, West, Mike, Nevins, Joseph R.

Journal:

Year:

2003

Language:

english

File:

PDF, 43 KB

english, 2003

34

Pelvic floor dysfunction in female Sjögren’s syndrome: an 8-year audit

Budden, Aaron K., te West, Nèvine I. D., Sturgess, Allan D., Moore, Kate H.

Journal:

International Urogynecology Journal

Year:

2016

Language:

english

File:

PDF, 285 KB

english, 2016

35

Does motivation predict outcome of pelvic floor muscle retraining?

te West, Nevine I.D., Parkin, Katrina, Hayes, Wendy, Costa, Daniel S.J., Kasparian, Nadine A., Moore, Kate H.

Journal:

Neurourology and Urodynamics

Year:

2015

Language:

english

File:

PDF, 253 KB

english, 2015

36

Sepsis in Haiti: Prevalence, Treatment, and Outcomes in a Port-au-Prince Referral Hospital

Papali, Alfred, Verceles, Avelino C., Augustin, Marc E., Colas, L. Nathalie, Jean-Francois, Carl H., Patel, Devang M, Todd, Nevins W., McCurdy, Michael T., West, T. Eoin

Journal:

Journal of Critical Care

Year:

2016

Language:

english

File:

PDF, 653 KB

english, 2016

37

Treatment outcomes after implementation of an adapted WHO protocol for severe sepsis and septic shock in Haiti

Papali, Alfred, Eoin West, T., Verceles, Avelino C., Augustin, Marc E., Nathalie Colas, L., Jean-Francois, Carl H., Patel, Devang M., Todd, Nevins W., McCurdy, Michael T.

Journal:

Journal of Critical Care

Year:

2017

Language:

english

File:

PDF, 685 KB

english, 2017

38

The momentum of human behavior in a natural setting

Mace, F. Charles, Lalli, Joseph S., Shea, Michael C., Lalli, Elizabeth Pinter, West, Barbara J., Roberts, Maura, Nevin, John A.

Journal:

Journal of the Experimental Analysis of Behavior

Year:

1990

Language:

english

File:

PDF, 1.22 MB

english, 1990

39

The Effect of Vaginal Oestriol Cream on Subjective and Objective Symptoms of Stress Urinary Incontinence and Vaginal Atrophy: An International Multi-Centre Pilot Study

Weber, Maaike A., Lim, Veronica, Oryszczyn, Josephine, te West, Nevine, Souget, Judith, Jeffery, Stephen, Roovers, Jan Paul W.R., Moore, Kate H.

Journal:

Gynecologic and Obstetric Investigation

Year:

2017

Language:

english

File:

PDF, 142 KB

english, 2017

40

The Low Conductivity of Geobacter uraniireducens Pili Suggests a Diversity of Extracellular Electron Transfer Mechanisms in the Genus Geobacter

Tan, Yang, Adhikari, Ramesh Y., Malvankar, Nikhil S., Ward, Joy E., Nevin, Kelly P., Woodard, Trevor L., Smith, Jessica A., Snoeyenbos-West, Oona L., Franks, Ashley E., Tuominen, Mark T., Lovley, Dere

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 697 KB

english, 2016

41

Origin of bistability underlying mammalian cell cycle entry

Yao, G., Tan, C., West, M., Nevins, J. R., You, L.

Journal:

Molecular Systems Biology

Year:

2014

Language:

english

File:

PDF, 285 KB

english, 2014

42

A 9-year audit of the efficacy of diathermy for cystitis cystica

Chen, Zhuoran, Bates, Lucy, West, Nevine Te, Moore, Kate H.

Journal:

Urogynaecologia

Year:

2019

Language:

english

File:

PDF, 353 KB

english, 2019

43

A 9-year audit of the efficacy of diathermy for cystitis cystica

Chen, Zhuoran, Bates, Lucy, West, Nevine Te, Moore, Kate H.

Journal:

Urogynaecologia

Year:

2019

File:

PDF, 353 KB

2019

44

A Decade of Damage Control Resuscitation

Cole, Elaine, Weaver, Anne, Gall, Lewis, West, Anita, Nevin, Daniel, Tallach, Rosel, O’Neill, Breda, Lahiri, Sumitra, Allard, Shubha, Tai, Nigel, Davenport, Ross, Green, Laura, Brohi, Karim

Journal:

Annals of Surgery

Year:

2019

File:

PDF, 242 KB

2019

45

The Effect of Hyper-Realistic Trauma Training on Emotional Intelligence in Second Year Military Medical Students

West, Erin, Singer-Chang, Gail, Ryznar, Rebecca, Ross, David, Czekajlo, Michael, Hoang, Tuan, Alson, Roy, Berbel, German, Moloff, Alan, Safaoui, Marian, Nevins, Natalie, LaPorta, Anthony J.

Journal:

Journal of Surgical Education

Year:

2020

File:

PDF, 609 KB

2020

46

Serum concentrations of estriol vary widely after application of vaginal estriol cream

West, Nevine, Day, Richard, Graham, Garry, Wright, Michael, White, Christopher, Popovic, Gordana, Moore, Kate Hilda

Journal:

British Journal of Clinical Pharmacology

Year:

2020

File:

PDF, 1.22 MB

2020

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