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1

Functional Hammerhead Ribozymes Naturally Encoded in the Genome of Arabidopsis thaliana

Rita Przybilski, Stefan Gräf , Aurélie Lescoute , Wolfgang Nellen, Eric Westhof, Gerhard Steger and Christian Hammann

Journal:

Year:

2005

Language:

english

File:

PDF, 1.09 MB

english, 2005

2

RNA Structure: Advances and Assessment of 3D Structure Prediction

Miao, Zhichao, Westhof, Eric

Journal:

Annual Review of Biophysics

Year:

2017

Language:

english

File:

PDF, 2.77 MB

english, 2017

3

Structure-based design, synthesis and A-site rRNA co-crystal complexes of novel amphiphilic aminoglycoside antibiotics with new binding modes: A synergistic hydrophobic effect against resistant bacteria

Stephen Hanessian, Kandasamy Pachamuthu, Janek Szychowski, Alexandre Giguère, Eric E. Swayze, Michael T. Migawa, Boris François, Jiro Kondo, Eric Westhof

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2010

Language:

english

File:

PDF, 461 KB

english, 2010

4

Analysis of RNA motifs

Neocles B Leontis, Eric Westhof

Journal:

Current Opinion in Structural Biology

Year:

2003

Language:

english

File:

PDF, 186 KB

english, 2003

5

Geometric nomenclature and classification of RNA base pairs

LEONTIS, NEOCLES B., WESTHOF, ERIC

Journal:

Year:

2001

File:

PDF, 1.79 MB

2001

6

Statistical analysis of atomic contacts at RNA–protein interfaces

Michèle Treger, Eric Westhof

Journal:

Journal of Molecular Recognition

Year:

2001

Language:

english

File:

PDF, 167 KB

english, 2001

7

Visualization of macromolecular structures

O'Donoghue, Seán I, Goodsell, David S, Frangakis, Achilleas S, Jossinet, Fabrice, Laskowski, Roman A, Nilges, Michael, Saibil, Helen R, Schafferhans, Andrea, Wade, Rebecca C, Westhof, Eric

Journal:

Year:

2010

Language:

english

File:

PDF, 2.02 MB

english, 2010

8

Automated prediction of three-way junction topological families in RNA secondary structures

Alexis Lamiable, Dominique Barth, Alain Denise, Franck Quessette, Sandrine Vial, Éric Westhof

Journal:

Computational Biology and Chemistry

Year:

2012

Language:

english

File:

PDF, 682 KB

english, 2012

9

The building blocks and motifs of RNA architecture

Neocles B Leontis, Aurelie Lescoute, Eric Westhof

Journal:

Current Opinion in Structural Biology

Year:

2006

Language:

english

File:

PDF, 365 KB

english, 2006

10

A Tyrosyl-tRNA Synthetase Recognizes a Conserved tRNA-like Structural Motif in the Group I Intron Catalytic Core

Mark G Caprara, Valerie Lehnert, Alan M Lambowitz, Eric Westhof

Journal:

Year:

1996

Language:

english

File:

PDF, 2.39 MB

english, 1996

11

RNA tectonics: towards RNA design

Eric Westhof, Benoît Masquida, Luc Jaeger

Journal:

Folding and Design

Year:

1996

Language:

english

File:

PDF, 1.25 MB

english, 1996

12

Biogenesis of Circular RNAs

Vicens, Quentin, Westhof, Eric

Journal:

Year:

2014

Language:

english

File:

PDF, 246 KB

english, 2014

13

Handbook of RNA Biochemistry (Second, Completely Revised and Enlarged Edition) || Gene Silencing Methods Using Vector-Encoded siRNAs or miRNAs

Hartmann, Roland K., Bindereif, Albrecht, Schön, Astrid, Westhof, Eric

Year:

2014

Language:

english

File:

PDF, 244 KB

english, 2014

14

Handbook of RNA Biochemistry (Second, Completely Revised and Enlarged Edition) || Global Analysis of Protein-RNA Interactions with Single-Nucleotide Resolution Using iCLIP

Hartmann, Roland K., Bindereif, Albrecht, Schön, Astrid, Westhof, Eric

Year:

2014

Language:

english

File:

PDF, 143 KB

english, 2014

15

Handbook of RNA Biochemistry (Second, Completely Revised and Enlarged Edition) || Screening Genome Sequences for known RNA Genes or Motifs

Hartmann, Roland K., Bindereif, Albrecht, Schön, Astrid, Westhof, Eric

Year:

2014

Language:

english

File:

PDF, 584 KB

english, 2014

16

Understanding the Origins of Bacterial Resistance to Aminoglycosides through Molecular Dynamics Mutational Study of the Ribosomal A-Site

Romanowska, Julia, McCammon, J. Andrew, Trylska, Joanna, Westhof, Eric

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 1.54 MB

english, 2011

17

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code

Rozov, Alexey, Demeshkina, Natalia, Khusainov, Iskander, Westhof, Eric, Yusupov, Marat, Yusupova, Gulnara

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.61 MB

english, 2016

18

Saccharide–RNA recognition

Thomas Hermann, Eric Westhof

Journal:

Year:

1998

Language:

english

File:

PDF, 559 KB

english, 1998

19

Flüchtige atomare Einblicke in eine Milliarden Jahre alte molekulare Maschine

Eric Westhof, Neocles Leontis

Journal:

Angewandte Chemie

Year:

2000

Language:

german

File:

PDF, 168 KB

german, 2000

20

Atomic Glimpses on a Billion-Year-Old Molecular Machine

Eric Westhof, Neocles Leontis

Journal:

Angewandte Chemie International Edition

Year:

2000

Language:

english

File:

PDF, 181 KB

english, 2000

21

RNA solvation: A molecular dynamics simulation perspective

Pascal Auffinger, Eric Westhof

Journal:

Year:

2000

Language:

english

File:

PDF, 747 KB

english, 2000

22

Web Site: RNA falten

Fabrice Jossinet, Eric Westhof

Journal:

Angewandte Chemie

Year:

2001

Language:

german

File:

PDF, 45 KB

german, 2001

23

Hydrophobic Groups Stabilize the Hydration Shell of 2′-O-Methylated RNA Duplexes

Pascal Auffinger, Eric Westhof

Journal:

Angewandte Chemie

Year:

2001

Language:

english

File:

PDF, 112 KB

english, 2001

24

Web Site: How to fold RNA

Fabrice Jossinet, Eric Westhof

Journal:

Angewandte Chemie International Edition

Year:

2001

Language:

english

File:

PDF, 45 KB

english, 2001

25

Hydrophobic Groups Stabilize the Hydration Shell of 2′-O-Methylated RNA Duplexes

Pascal Auffinger, Eric Westhof

Journal:

Angewandte Chemie International Edition

Year:

2001

Language:

english

File:

PDF, 113 KB

english, 2001

26

Antibacterial Aminoglycosides with a Modified Mode of Binding to the Ribosomal-RNA Decoding Site

Boris François, Janek Szychowski, Susanta Sekhar Adhikari, Kandasamy Pachamuthu, Eric E. Swayze, Richard H. Griffey, Michael T. Migawa, Eric Westhof, Stephen Hanessian

Journal:

Angewandte Chemie

Year:

2004

Language:

english

File:

PDF, 237 KB

english, 2004

27

Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin

Jiro Kondo, Boris François, Alexandre Urzhumtsev, Eric Westhof

Journal:

Angewandte Chemie

Year:

2006

Language:

english

File:

PDF, 728 KB

english, 2006

28

Antibacterial Aminoglycosides with a Modified Mode of Binding to the Ribosomal-RNA Decoding Site

Boris François, Janek Szychowski, Susanta Sekhar Adhikari, Kandasamy Pachamuthu, Eric E. Swayze, Richard H. Griffey, Michael T. Migawa, Eric Westhof, Stephen Hanessian

Journal:

Angewandte Chemie

Year:

2007

File:

PDF, 27 KB

2007

29

Antibacterial Aminoglycosides with a Modified Mode of Binding to the Ribosomal-RNA Decoding Site

Boris François, Janek Szychowski, Susanta Sekhar Adhikari, Kandasamy Pachamuthu, Eric E. Swayze, Richard H. Griffey, Michael T. Migawa, Eric Westhof, Stephen Hanessian

Journal:

Angewandte Chemie International Edition

Year:

2004

Language:

english

File:

PDF, 239 KB

english, 2004

30

Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin

Jiro Kondo, Boris François, Alexandre Urzhumtsev, Eric Westhof

Journal:

Angewandte Chemie International Edition

Year:

2006

Language:

english

File:

PDF, 729 KB

english, 2006

31

Antibacterial Aminoglycosides with a Modified Mode of Binding to the Ribosomal-RNA Decoding Site

Boris François, Janek Szychowski, Susanta Sekhar Adhikari, Kandasamy Pachamuthu, Eric E. Swayze, Richard H. Griffey, Michael T. Migawa, Eric Westhof, Stephen Hanessian

Journal:

Angewandte Chemie International Edition

Year:

2007

File:

PDF, 28 KB

2007

32

Molecular recognition of aminoglycoside antibiotics by ribosomal RNA and resistance enzymes: An analysis of x-ray crystal structures

Quentin Vicens, Eric Westhof

Journal:

Year:

2003

Language:

english

File:

PDF, 2.00 MB

english, 2003

33

The Molecular Basis for A-Site Mutations Conferring Aminoglycoside Resistance: Relationship between Ribosomal Susceptibility and X-ray Crystal Structures

Peter Pfister, Sven Hobbie, Quentin Vicens, Erik C. Böttger, Eric Westhof

Journal:

Year:

2003

Language:

english

File:

PDF, 300 KB

english, 2003

34

RNA as a Drug Target: The Case of Aminoglycosides

Quentin Vicens, Eric Westhof

Journal:

Year:

2003

Language:

english

File:

PDF, 166 KB

english, 2003

35

From RNAi to Epigenomes: How RNA Rules The World

Eric Westhof, Witold Filipowicz

Journal:

Year:

2005

Language:

english

File:

PDF, 106 KB

english, 2005

36

Differential Selectivity of Natural and Synthetic Aminoglycosides towards the Eukaryotic and Prokaryotic Decoding A Sites

Jiro Kondo, Mariana Hainrichson, Igor Nudelman, Dalia Shallom-Shezifi, Christopher M. Barbieri, Daniel S. Pilch, Eric Westhof, Timor Baasov

Journal:

Year:

2007

Language:

english

File:

PDF, 1.04 MB

english, 2007

37

Cover Picture: Differential Selectivity of Natural and Synthetic Aminoglycosides towards the Eukaryotic and Prokaryotic Decoding A Sites (ChemBioChem 14/2007)

Jiro Kondo, Mariana Hainrichson, Igor Nudelman, Dalia Shallom-Shezifi, Christopher M. Barbieri, Daniel S. Pilch, Eric Westhof, Timor Baasov

Journal:

Year:

2007

File:

PDF, 35 KB

2007

38

The annotation of RNA motifs

Neocles B. Leontis, Eric Westhof

Journal:

Comparative and Functional Genomics

Year:

2002

Language:

english

File:

PDF, 118 KB

english, 2002

39

ChemInform Abstract: Atomic Glimpses on a Billion-Year-Old Molecular Machine

Eric Westhof, Neocles Leontis

Journal:

Year:

2000

File:

PDF, 24 KB

2000

40

RNA as a Drug Target: The Case of Aminoglycosides

Quentin Vicens, Eric Westhof

Journal:

Year:

2003

File:

PDF, 50 KB

2003

41

Crystal Structure of the Bacterial Ribosomal Decoding Site Complexed with a Synthetic Doubly Functionalized Paromomycin Derivative: a New Specific Binding Mode to an A-Minor Motif Enhances in vitro Antibacterial Activity

Jiro Kondo, Kandasamy Pachamuthu, Boris François, Janek Szychowski, Stephen Hanessian, Eric Westhof

Journal:

Year:

2007

Language:

english

File:

PDF, 1.40 MB

english, 2007

42

Inhibition of Aminoglycoside-Deactivating Enzymes APH(3′)-IIIa and AAC(6′)-Ii by Amphiphilic Paromomycin O2′′-Ether Analogues

Dr. Janek Szychowski, Dr. Jiro Kondo, Omar Zahr, Prof. Karine Auclair, Prof. Eric Westhof, Prof. Stephen Hanessian, Prof. Jeffrey W. Keillor

Journal:

Year:

2011

Language:

english

File:

PDF, 590 KB

english, 2011

43

Inside Cover: Inhibition of Aminoglycoside-Deactivating Enzymes APH(3′)-IIIa and AAC(6′)-Ii by Amphiphilic Paromomycin O2′′-Ether Analogues (ChemMedChem 11/2011)

Dr. Janek Szychowski, Dr. Jiro Kondo, Omar Zahr, Prof. Karine Auclair, Prof. Eric Westhof, Prof. Stephen Hanessian, Prof. Jeffrey W. Keillor

Journal:

Year:

2011

File:

PDF, 1.18 MB

2011

44

A tale in molecular recognition: the hammerhead ribozyme

Journal:

Journal of Molecular Recognition

Year:

2007

Language:

english

File:

PDF, 122 KB

english, 2007

45

Base pairs and pseudo pairs observed in RNA–ligand complexes

Jiro Kondo, Eric Westhof

Journal:

Journal of Molecular Recognition

Year:

2010

Language:

english

File:

PDF, 612 KB

english, 2010

46

INDO study of bent radical anions

Eric Westhof, Adolf Müller

Journal:

Chemical Physics Letters

Year:

1975

Language:

english

File:

PDF, 335 KB

english, 1975

47

Visualization of energetics and conformations from molecular computer simulations

Paul K Weiner, Steven L Gallion, Eric Westhof, Ronald M Levy

Journal:

Journal of Molecular Graphics

Year:

1986

Language:

english

File:

PDF, 690 KB

english, 1986

48

How to Silence Silencing

Journal:

Chemistry & Biology

Year:

2004

Language:

english

File:

PDF, 158 KB

english, 2004

49

Architecture of a Diels-Alderase Ribozyme with a Preformed Catalytic Pocket

Sonja Keiper, Dirk Bebenroth, Burckhard Seelig, Eric Westhof, Andres Jäschke

Journal:

Chemistry & Biology

Year:

2004

Language:

english

File:

PDF, 570 KB

english, 2004

50

Riboswitch Structures: Purine Ligands Replace Tertiary Contacts

Aurélie Lescoute, Eric Westhof

Journal:

Chemistry & Biology

Year:

2005

Language:

english

File:

PDF, 185 KB

english, 2005