Yonatan Grad: search on Z-Library

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1

Aggregated mobility data could help fight COVID-19

Buckee, Caroline O., Balsari, Satchit, Chan, Jennifer, Crosas, MercÃ¨, Dominici, Francesca, Gasser, Urs, Grad, Yonatan H., Grenfell, Bryan, Halloran, M. Elizabeth, Kraemer, Moritz U. G., Lipsitch, Mar

Journal:

Year:

2020

Language:

english

File:

PDF, 315 KB

english, 2020

2

WGS to predict antibiotic MICs for Neisseria gonorrhoeae

Eyre, David W., De Silva, Dilrini, Cole, Kevin, Peters, Joanna, Cole, Michelle J., Grad, Yonatan H., Demczuk, Walter, Martin, Irene, Mulvey, Michael R., Crook, Derrick W., Walker, A. Sarah, Peto, Tim

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2017

Language:

english

File:

PDF, 275 KB

english, 2017

3

Comparing nonpharmaceutical interventions for containing emerging epidemics

Peak, Corey M., Childs, Lauren M., Grad, Yonatan H., Buckee, Caroline O.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 998 KB

english, 2017

4

Weak Epistasis May Drive Adaptation in Recombining Bacteria

Arnold, Brian J., Gutmann, Michael U., Grad, Yonatan H., Sheppard, Samuel K., Corander, Jukka, Lipsitch, Marc, Hanage, William P.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.18 MB

english, 2018

5

Computational and Experimental Identification of C. elegans microRNAs

Yonatan Grad, John Aach, Gabriel D Hayes, Brenda J Reinhart, George M Church, Gary Ruvkun, John Kim

Journal:

Year:

2003

Language:

english

File:

PDF, 406 KB

english, 2003

6

Bitter Pills

Grad, Yonatan H., Seifter, Julian L., Levy, Bruce D., Loscalzo, Joseph

Journal:

Boston Medical and Surgical Journal

Year:

2010

Language:

english

File:

PDF, 931 KB

english, 2010

7

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

Grad, Yonatan H, Kirkcaldy, Robert D, Trees, David, Dordel, Janina, Harris, Simon R, Goldstein, Edward, Weinstock, Hillard, Parkhill, Julian, Hanage, William P, Bentley, Stephen, Lipsitch, Marc

Journal:

The Lancet Infectious Diseases

Year:

2014

Language:

english

File:

PDF, 407 KB

english, 2014

8

Origin and Proliferation of Multiple-Drug Resistance in Bacterial Pathogens

Chang, Hsiao-Han, Cohen, Ted, Grad, Yonatan H., Hanage, William P., O'Brien, Thomas F., Lipsitch, Marc

Journal:

Microbiology and Molecular Biology Reviews

Year:

2015

Language:

english

File:

PDF, 901 KB

english, 2015

9

Cholera Modeling

Grad, Yonatan H., Miller, Joel C., Lipsitch, Marc

Journal:

Year:

2012

Language:

english

File:

PDF, 472 KB

english, 2012

10

Epidemiologic data and pathogen genome sequences: a powerful synergy for public health

Grad, Yonatan H, Lipsitch, Marc

Journal:

Year:

2014

Language:

english

File:

PDF, 313 KB

english, 2014

11

Biodiversity and hypervirulence of Listeria monocytogenes

Grad, Yonatan H, Fortune, Sarah M

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 238 KB

english, 2016

12

Improving Control of Antibiotic-Resistant Gonorrhea by Integrating Research Agendas Across Disciplines: Key Questions Arising From Mathematical Modeling

Grad, Yonatan H., Goldstein, Edward, Lipsitch, Marc, White, Peter J.

Journal:

The Journal of Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 547 KB

english, 2016

13

The novel 2016 WHO Neisseria gonorrhoeae reference strains for global quality assurance of laboratory investigations: phenotypic, genetic and reference genome characterization

Unemo, Magnus, Golparian, Daniel, Sánchez-Busó, Leonor, Grad, Yonatan, Jacobsson, Susanne, Ohnishi, Makoto, Lahra, Monica M., Limnios, Athena, Sikora, Aleksandra E., Wi, Teodora, Harris, Simon R.

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

14

Genomic epidemiology of gonococcal resistance to extended spectrum cephalosporins, macrolides, and fluoroquinolones in the US, 2000-2013

Grad, Yonatan H., Harris, Simon R., Kirkcaldy, Robert D., Green, Anna G., Marks, Debora S., Bentley, Stephen D., Trees, David, Lipsitch, Marc

Journal:

The Journal of Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 3.83 MB

english, 2016

15

Use of whole-genome sequencing data to analyze 23S rRNA-mediated azithromycin resistance

Johnson, Steven R., Grad, Yonatan, Abrams, A. Jeanine, Pettus, Kevin, Trees, David L.

Journal:

International Journal of Antimicrobial Agents

Year:

2017

Language:

english

File:

PDF, 179 KB

english, 2017

16

Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks

Cerqueira, Gustavo C., Earl, Ashlee M., Ernst, Christoph M., Grad, Yonatan H., Dekker, John P., Feldgarden, Michael, Chapman, Sinéad B., Reis-Cunha, João L., Shea, Terrance P., Young, Sarah, Zeng, Qia

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.63 MB

english, 2017

17

Contrasting within- and between-host immune selection shapes Neisseria Opa repertoires

Watkins, Eleanor R., Grad, Yonatan H., Gupta, Sunetra, Buckee, Caroline O.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.45 MB

english, 2015

18

Deep sequencing of RSV from an adult challenge study and from naturally infected infants reveals heterogeneous diversification dynamics

Lau, Jessica W., Kim, Young-In, Murphy, Ryan, Newman, Ruchi, Yang, Xiao, Zody, Michael, DeVincenzo, John, Grad, Yonatan H.

Journal:

Year:

2017

Language:

english

File:

PDF, 1024 KB

english, 2017

19

Genomic characterization of urethritis-associated Neisseria meningitidis shows that a wide range of N. meningitidis strains can cause urethritis

Ma, Kevin C., Unemo, Magnus, Jeverica, Samo, Kirkcaldy, Robert D., Takahashi, Hideyuki, Ohnishi, Makoto, Grad, Yonatan H.

Journal:

Journal of Clinical Microbiology

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

20

[BMJ Publishing Group Ltd STI and HIV World Congress Abstracts, July 9–12 2017, Rio de Janeiro, Brazil - ()] Systems Biology and Novel Technologies For Molecular Analysis and Diagnosis - P1.16 Acquisition of azithromycin resistance in neisseria gonorrhoeae via intragenus recombination

Wadsworth, Crista, Grad, Yonatan

Language:

english

File:

PDF, 82 KB

english

21

Trends in antibiotic susceptibility in Staphylococcus aureus in Boston, Massachusetts, 2000-2014

Kanjilal, Sanjat, Sater, Mohamad R. Abdul, Thayer, Maile, Lagoudas, Georgia K., Kim, Soohong, Blainey, Paul C., Grad, Yonatan H.

Journal:

Journal of Clinical Microbiology

Year:

2017

Language:

english

File:

PDF, 1.95 MB

english, 2017

22

Impact of Rapid Susceptibility Testing and Antibiotic Selection Strategy on the Emergence and Spread of Antibiotic Resistance in Gonorrhea

Tuite, Ashleigh R, Gift, Thomas L, Chesson, Harrell W, Hsu, Katherine, Salomon, Joshua A, Grad, Yonatan H

Journal:

The Journal of Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 856 KB

english, 2017

23

Vaccine waning and mumps re-emergence in the United States

Lewnard, Joseph A., Grad, Yonatan H.

Journal:

Science Translational Medicine

Year:

2018

Language:

english

File:

PDF, 834 KB

english, 2018

24

Vaccine waning and mumps re-emergence in the USA

Lewnard, Joseph, Grad, Yonatan H

Journal:

Open Forum Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 404 KB

english, 2017

25

[BMJ Publishing Group Ltd STI and HIV World Congress Abstracts, July 9–12 2017, Rio de Janeiro, Brazil - ()] Epidemiology, Monitoring and Evaluation - P3.16 Impact of rapid susceptibility profiling on the emergence and spread of antibiotic resistance in gonorrhoea

Tuite, Ashleigh, Hsu, Katherine, Gift, Thomas L, Salomon, Joshua A, Grad, Yonatan H

Language:

english

File:

PDF, 70 KB

english

26

Metagenomic Sequencing of an Echovirus 30 Genome From Cerebrospinal Fluid of a Patient With Aseptic Meningitis and Orchitis

Piantadosi, Anne, Mukerji, Shibani S, Chitneni, Pooja, Cho, Tracey A, Cosimi, Lisa A, Hung, Deborah T, Goldberg, Marcia B, Sabeti, Pardis C, Kuritzkes, Daniel R, Grad, Yonatan H

Journal:

Open Forum Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 662 KB

english, 2017

27

Multidrug-resistant Neisseria gonorrhoeae : implications for future treatment strategies

MacFadden, Derek R, Lipsitch, Marc, Olesen, Scott W, Grad, Yonatan

Journal:

The Lancet Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 44 KB

english, 2018

28

Applications of genomics to slow the spread of multidrug-resistant Neisseria gonorrhoeae

Mortimer, Tatum D., Grad, Yonatan H.

Journal:

Annals of the New York Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 325 KB

english, 2018

29

Testing for gonorrhoea should routinely include the pharynx

Whittles, Lilith K, Didelot, Xavier, Grad, Yonatan H, White, Peter J

Journal:

The Lancet Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 51 KB

english, 2018

30

Trends in outpatient antibiotic use and prescribing practice among US older adults, 2011-15: observational study

Olesen, Scott W, Barnett, Michael L, MacFadden, Derek R, Lipsitch, Marc, Grad, Yonatan H

Journal:

Year:

2018

Language:

english

File:

PDF, 371 KB

english, 2018

31

Clinically prevalent mutations in Mycobacterium tuberculosis alter propionate metabolism and mediate multidrug tolerance

Hicks, Nathan D., Yang, Jian, Zhang, Xiaobing, Zhao, Bing, Grad, Yonatan H., Liu, Liguo, Ou, Xichao, Chang, Zhili, Xia, Hui, Zhou, Yang, Wang, Shengfen, Dong, Jie, Sun, Lilian, Zhu, Yafang, Zhao, Yanl

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 2.03 MB

english, 2018

32

Azithromycin Resistance through Interspecific Acquisition of an Epistasis-Dependent Efflux Pump Component and Transcriptional Regulator in Neisseria gonorrhoeae

Wadsworth, Crista B., Arnold, Brian J., Sater, Mohamad R. Abdul, Grad, Yonatan H., Shafer, William, Gilmore, Michael S.

Journal:

Year:

2018

Language:

english

File:

PDF, 6.81 MB

english, 2018

33

Azithromycin susceptibility in Neisseria gonorrhoeae and seasonal macrolide use

Olesen, Scott W, Torrone, Elizabeth A, Papp, John R, Kirkcaldy, Robert D, Lipsitch, Marc, Grad, Yonatan H

Journal:

The Journal of Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 642 KB

english, 2018

34

Response to Skowronski and De Serres

Cobey, Sarah, Grad, Yonatan H

Journal:

Clinical Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 108 KB

english, 2018

35

Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora

Tedijanto, Christine, Olesen, Scott W., Grad, Yonatan H., Lipsitch, Marc

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 623 KB

english, 2018

36

Reply to Allan-Blitz and Klausner

Grad, Yonatan H., Lipsitch, Marc

Journal:

The Journal of Infectious Diseases

Year:

2016

File:

PDF, 118 KB

2016

37

Antimicrobial Resistance in Neisseria gonorrhoeae

Cristillo, Anthony D., Bristow, Claire C., Torrone, Elizabeth, Dillon, Jo-Anne, Kirkcaldy, Robert D., Dong, Huan, Grad, Yonatan H., Nicholas, Robert A., Rice, Peter A., Lawrence, Kenneth, Oldach, Davi

Journal:

Sexually Transmitted Diseases

Year:

2019

File:

PDF, 197 KB

2019

38

Antibiotic Consumption and Antibiotic Resistance Across Organisms, Drugs, and Consumer Groups

Olesen, Scott, Barnett, Michael, MacFadden, Derek, Lipsitch, Marc, Grad, Yonatan H

Journal:

Open Forum Infectious Diseases

Year:

2017

File:

PDF, 710 KB

2017

39

A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation

Järvenpää, Marko, Sater, Mohamad R. Abdul, Lagoudas, Georgia K., Blainey, Paul C., Miller, Loren G., McKinnell, James A., Huang, Susan S., Grad, Yonatan H., Marttinen, Pekka, Kasson, Peter M

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.77 MB

english, 2019

40

Cumulative Probability of Receiving an Antibiotic Prescription over Time

Olesen, Scott W., MacFadden, Derek, Grad, Yonatan H.

Journal:

New England Journal of Medicine

Year:

2019

File:

PDF, 391 KB

2019

41

Impact of species diversity on the design of RNA-based diagnostics for antibiotic resistance in Neisseria gonorrhoeae

Wadsworth, Crista B., Sater, Mohamad R.A., Bhattacharyya, Roby P., Grad, Yonatan H.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2019

Language:

english

File:

PDF, 3.00 MB

english, 2019

42

Outpatient Antibiotic Prescribing in Massachusetts, 2011–2015

Klevens, R Monina, Caten, Evan, Olesen, Scott W, DeMaria, Alfred, Troppy, Scott, Grad, Yonatan H

Journal:

Open Forum Infectious Diseases

Year:

2019

File:

PDF, 338 KB

2019

43

Impact of species diversity on the design of RNA-based diagnostics for antibiotic resistance in Neisseria gonorrhoeae

Wadsworth, Crista B., Sater, Mohamad R.A., Bhattacharyya, Roby P., Grad, Yonatan H.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2019

File:

PDF, 3.00 MB

2019

44

Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses

Chang, Hsiao-Han, Huber, Roland G, Bond, Peter J, Grad, Yonatan H, Camerini, David, Maurer-Stroh, Sebastian, Lipsitch, Marc

Journal:

Bulletin of the World Health Organization

Year:

2017

Language:

english

File:

PDF, 6.91 MB

english, 2017

45

The impact of antimicrobials on gonococcal evolution

Sánchez-Busó, Leonor, Golparian, Daniel, Corander, Jukka, Grad, Yonatan H., Ohnishi, Makoto, Flemming, Rebecca, Parkhill, Julian, Bentley, Stephen D., Unemo, Magnus, Harris, Simon R.

Journal:

Nature Microbiology

Year:

2019

Language:

english

File:

PDF, 2.99 MB

english, 2019

46

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data

Hicks, Allison L., Wheeler, Nicole, Sánchez-Busó, Leonor, Rakeman, Jennifer L., Harris, Simon R., Grad, Yonatan H., Ioerger, Thomas R.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.82 MB

english, 2019

47

Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era

Williamson, Deborah A., Chow, Eric P. F., Gorrie, Claire L., Seemann, Torsten, Ingle, Danielle J., Higgins, Nasra, Easton, Marion, Taiaroa, George, Grad, Yonatan H., Kwong, Jason C., Fairley, Christop

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 935 KB

english, 2019

48

Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era

Williamson, Deborah A., Chow, Eric P. F., Gorrie, Claire L., Seemann, Torsten, Ingle, Danielle J., Higgins, Nasra, Easton, Marion, Taiaroa, George, Grad, Yonatan H., Kwong, Jason C., Fairley, Christop

Journal:

Nature Communications

Year:

2019

File:

PDF, 935 KB

2019

49

Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

Arnold, Brian, Sohail, Mashaal, Wadsworth, Crista, Corander, Jukka, Hanage, William P, Sunyaev, Shamil, Grad, Yonatan H, Pond, Sergei Kosakovsky

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 2.99 MB

english, 2019

50

The Population Dynamics of Antibiotic Resistance in Staphylococcus aureus in Boston: A Return to Antibiotic Susceptibility

Kanjilal, Sanjat, Sater, Mohamad, Thayer, Maile, Lagoudas, Georgia, Kim, Soohong, Blainey, Paul, Grad, Yonatan H

Journal:

Open Forum Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 281 KB

english, 2017

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