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51

Inferring domain-domain interactions from protein-protein interactions in the complex network conformation

Chen, Chen, Zhao, Jun-Fei, Huang, Qiang, Wang, Rui-Sheng, Zhang, Xiang-Sun

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 595 KB

english, 2012

52

A unified computational model for revealing and predicting subtle subtypes of cancers

Xianwen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 300 KB

english, 2012

53

The Knowledge-Integrated Network Biomarkers Discovery for Major Adverse Cardiac Events

Jin, Guangxu, Zhou, Xiaobo, Wang, Honghui, Zhao, Hong, Cui, Kemi, Zhang, Xiang-Sun, Chen, Luonan, Hazen, Stanley L., Li, King, Wong, Stephen T. C.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.60 MB

english, 2008

54

[Nonconvex Optimization and Its Applications] Neural Networks in Optimization Volume 46 || Introduction to Artificial Neural Network

Zhang, Xiang-Sun

Year:

2000

Language:

english

File:

PDF, 1.46 MB

english, 2000

55

Biomolecular Networks || Transcription Regulation: Networks and Models

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 2.77 MB

english, 2009

56

Biomolecular Networks || Topological Structure of Biomolecular Networks

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 3.89 MB

english, 2009

57

Biomolecular Networks || Network-Based Prediction of Protein Function

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 1.91 MB

english, 2009

58

Biomolecular Networks || Reconstruction of Gene Regulatory Networks

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 1.72 MB

english, 2009

59

Biomolecular Networks || Introduction

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 1.71 MB

english, 2009

60

Biomolecular Networks || Prediction of Protein–Protein Interactions

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 5.45 MB

english, 2009

61

Biomolecular Networks || Other Topics and New Trends

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 171 KB

english, 2009

62

Biomolecular Networks || Inference of Transcriptional Regulatory Networks

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 2.42 MB

english, 2009

63

Biomolecular Networks || Alignment of Biomolecular Networks

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 4.17 MB

english, 2009

64

Biomolecular Networks || Metabolic Networks: Analysis, Reconstruction, and Application

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 1.36 MB

english, 2009

65

Biomolecular Networks || Signaling Networks: Modeling and Inference

Chen, Luonan, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2009

Language:

english

File:

PDF, 1.49 MB

english, 2009

66

Multiple birth support vector machine for multi-class classification

Zhi-Xia Yang, Yuan-Hai Shao, Xiang-Sun Zhang

Journal:

Neural Computing and Applications

Year:

2013

Language:

english

File:

PDF, 368 KB

english, 2013

67

Cancer stem cells display extremely large evolvability: alternating plastic and rigid networks as a potential Mechanism

Csermely, Peter, Hódsági, János, Korcsmáros, Tamás, Módos, Dezső, Perez-Lopez, Áron R., Szalay, Kristóf, Veres, Dániel V., Lenti, Katalin, Wu, Ling-Yun, Zhang, Xiang-Sun

Journal:

Seminars in Cancer Biology

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

68

Computational systems biology in the big data era

Wang, Yong, Zhang, Xiang-Sun, Chen, Luonan

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 102 KB

english, 2013

69

Corbi: a new R package for biological network alignment and querying

Huang, Qiang, Wu, Ling-Yun, Zhang, Xiang-Sun

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 987 KB

english, 2013

70

Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data

Zhang, Junhua, Zhang, Shihua, Wang, Yong, Zhang, Xiang-Sun

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 761 KB

english, 2013

71

Discovery of co-occurring driver pathways in cancer

Junhua Zhang,Ling-Yun Wu,Xiang-Sun Zhang,Shihua Zhang

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 897 KB

english, 2014

72

[IEEE 2011 IEEE International Conference on Systems Biology (ISB) - Zhuhai, China (2011.09.2-2011.09.4)] 2011 IEEE International Conference on Systems Biology (ISB) - Evaluating the denoising techniques in protein-protein interaction prediction

Yong-Cui Wang,, Xian-Wen Ren,, Zhang, Chun-Hua, Deng, Nai-Yang, Xiang-Sun Zhang,

Year:

2011

Language:

english

File:

PDF, 573 KB

english, 2011

73

Breast tumor subgroups reveal diverse clinical prognostic power

Liu, Zhaoqi, Zhang, Xiang-Sun, Zhang, Shihua

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 1.15 MB

english, 2014

74

Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients

Liu, Zhi-Ping, Wang, Yong, Zhang, Xiang-Sun, Xia, Weiming, Chen, Luonan

Journal:

Molecular BioSystems

Year:

2011

Language:

english

File:

PDF, 4.30 MB

english, 2011

75

[IEEE 2011 IEEE International Conference on Systems Biology (ISB) - Zhuhai, China (2011.09.2-2011.09.4)] 2011 IEEE International Conference on Systems Biology (ISB) - A linear programming model for identifying non-redundant biomarkers based on gene expression profiles

Xianwen Ren,, Yong Wang,, Luonan Chen,, Xiang-Sun Zhang,

Year:

2011

Language:

english

File:

PDF, 2.54 MB

english, 2011

76

[IEEE 2010 International Conference on Machine Learning and Cybernetics (ICMLC) - Qingdao, China (2010.07.11-2010.07.14)] 2010 International Conference on Machine Learning and Cybernetics - Inferring gene regulatory networks from expression data with prior knowledge by linear programming

Liu, Zhi-Ping, Zhang, Xiang-Sun, Chen, Luonan

Year:

2010

Language:

english

File:

PDF, 383 KB

english, 2010

77

[IEEE 2011 IEEE International Conference on Systems Biology (ISB) - Zhuhai, China (2011.09.2-2011.09.4)] 2011 IEEE International Conference on Systems Biology (ISB) - Analyzing time-course gene expression data using profile-state hidden Markov model

Qiang Huang,, Ling-Yun Wu,, Ji-Bin Qu,, Xiang-Sun Zhang,

Year:

2011

Language:

english

File:

PDF, 696 KB

english, 2011

78

[IEEE 2011 IEEE International Conference on Systems Biology (ISB) - Zhuhai, China (2011.09.2-2011.09.4)] 2011 IEEE International Conference on Systems Biology (ISB) - A dynamical method to extract communities induced by low or middle-degree nodes

Junhua Zhang,, Zhi-Ping Liu,, Xiang-Sun Zhang,, Luonan Chen,

Year:

2011

Language:

english

File:

PDF, 904 KB

english, 2011

79

[IEEE 2013 7th International Conference on Systems Biology (ISB) - Huangshan, China (2013.08.23-2013.08.25)] 2013 7th International Conference on Systems Biology (ISB) - A novel discretization method for processing digital gene expression profiles

Qu, Jibin, Zhang, Jinxia, Huang, Chenyang, Xie, Baogui, Wang, Yong, Zhang, Xiang-Sun

Year:

2013

Language:

english

File:

PDF, 658 KB

english, 2013

80

[IEEE 2012 IEEE 6th International Conference on Systems Biology (ISB) - Xian, China (2012.08.18-2012.08.20)] 2012 IEEE 6th International Conference on Systems Biology (ISB) - Identifying mutated core modules in glioblastoma by integrative network analysis

Zhang, Junhua, Zhang, Shihua, Wang, Yong, Zhao, Junfei, Zhang, Xiang-Sun

Year:

2012

Language:

english

File:

PDF, 679 KB

english, 2012

81

[IEEE 2008 IEEE International Conference on Bioinformatics and Biomedicine - Philadelphia, PA, USA (2008.11.3-2008.11.5)] 2008 IEEE International Conference on Bioinformatics and Biomedicine - Reconstruction of Regulator Activity in E. coli Post-Transcription Processes

Wang, Rui-Sheng, Jin, Guangxu, Zhang, Xiang-Sun, Chen, Luonan

Year:

2008

Language:

english

File:

PDF, 202 KB

english, 2008

82

Evaluating Protein Similarity from Coarse Structures

Yong Wang,, Ling-Yun Wu,, Ji-Hong Zhang,, Zhong-Wei Zhan,, Xiang-Sun Zhang,, Luonan Chen,

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 2.55 MB

english, 2009

83

Uncovering fuzzy community structure in complex networks

Zhang, Shihua, Wang, Rui-Sheng, Zhang, Xiang-Sun

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 1.85 MB

english, 2007

84

Common community structure in time-varying networks

Zhang, Shihua, Zhao, Junfei, Zhang, Xiang-Sun

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 795 KB

english, 2012

85

[IEEE 2012 10th World Congress on Intelligent Control and Automation (WCICA 2012) - Beijing, China (2012.07.6-2012.07.8)] Proceedings of the 10th World Congress on Intelligent Control and Automation - Identification of overlapping communities in protein interaction networks using multi-scale local information expansion

Li, Huijia, Liu, Zhi-Ping, Chen, Luonan, Zhang, Xiang-Sun

Year:

2012

Language:

english

File:

PDF, 503 KB

english, 2012

86

[IEEE 2009 IEEE International Conference on Systems, Man and Cybernetics - SMC - San Antonio, TX, USA (2009.10.11-2009.10.14)] 2009 IEEE International Conference on Systems, Man and Cybernetics - Dynamically dysfunctional protein interactions in the development of Alzheimer's disease

Liu, Zhi-Ping, Wang, Yong, Wen, Tieqiao, Zhang, Xiang-Sun, Xia, Weiming, Chen, Luonan

Year:

2009

Language:

english

File:

PDF, 920 KB

english, 2009

87

[IEEE 2011 IEEE International Conference on Systems Biology (ISB) - Zhuhai, China (2011.09.2-2011.09.4)] 2011 IEEE International Conference on Systems Biology (ISB) - Inferring domain-domain interactions using an extended parsimony model

Chen Chen,, Jun-Fei Zhao,, Qiang Huang,, Wang, Rui-Sheng, Zhang, Xiang-Sun

Year:

2011

Language:

english

File:

PDF, 576 KB

english, 2011

88

[IEEE 2011 IEEE International Conference on Systems Biology (ISB) - Zhuhai, China (2011.09.2-2011.09.4)] 2011 IEEE International Conference on Systems Biology (ISB) - Identifying biomarkers for acupuncture treatment via an optimization model

Wang, Yong, Qiao-Feng Wu,, Chen Chen,, Xian-Zhong Yan,, Shu-Guang Yu,, Zhang, Xiang-Sun, Fan-Rong Liang,

Year:

2011

Language:

english

File:

PDF, 969 KB

english, 2011

89

[IEEE 2012 IEEE 6th International Conference on Systems Biology (ISB) - Xian, China (2012.08.18-2012.08.20)] 2012 IEEE 6th International Conference on Systems Biology (ISB) - CNetA: Network alignment by combining biological and topological features

Huang, Qiang, Wu, Ling-Yun, Zhang, Xiang-Sun

Year:

2012

Language:

english

File:

PDF, 760 KB

english, 2012

90

Quantitative function for community detection

Li, Zhenping, Zhang, Shihua, Wang, Rui-Sheng, Zhang, Xiang-Sun, Chen, Luonan

Journal:

Physical Review E

Year:

2008

Language:

english

File:

PDF, 410 KB

english, 2008

91

[Institution of Engineering and Technology 11th International Symposium on Operations Research and its Applications in Engineering, Technology and Management 2013 (ISORA 2013) - Huangshan, China (23-25 Aug. 2013)] 11th International Symposium on Operations Research and its Applications in Engineering, Technology and Management 2013 (ISORA 2013) - A study of inflammation immunization strategy in weighted complex network

Chi Zhang,, Hui-Jia Li,, Xiang-Sun Zhang,

Year:

2013

Language:

english

File:

PDF, 200 KB

english, 2013

92

A Network Biology Study on Circadian Rhythm by Integrating Various Omics Data

Wang, Yong, Zhang, Xiang-Sun, Chen, Luonan

Journal:

Omics A Journal of Integrative Biology

Year:

2009

Language:

english

File:

PDF, 10.71 MB

english, 2009

93

Potts model based on a Markov process computation solves the community structure problem effectively

Li, Hui-Jia, Wang, Yong, Wu, Ling-Yun, Zhang, Junhua, Zhang, Xiang-Sun

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 1.91 MB

english, 2012

94

Analysis of stability of community structure across multiple hierarchical levels

Li, Hui-Jia, Zhang, Xiang-Sun

Journal:

EPL (Europhysics Letters)

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

95

EXPLORING PROTEIN'S OPTIMAL HP CONFIGURATIONS BY SELF-ORGANIZING MAPPING

ZHANG, XIANG-SUN, WANG, YONG, ZHAN, ZHONG-WEI, WU, LING-YUN, CHEN, LUONAN

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2005

Language:

english

File:

PDF, 245 KB

english, 2005

96

[Lecture Notes in Computer Science] Algorithms and Computation Volume 834 || Multispace search: A new optimization approach

Du, Ding-Zhu, Zhang, Xiang-Sun

Year:

1994

Language:

english

File:

PDF, 517 KB

english, 1994

97

Community structure detection based on Potts model and network's spectral characterization

Li, Hui-Jia, Wang, Yong, Wu, Ling-Yun, Liu, Zhi-Ping, Chen, Luonan, Zhang, Xiang-Sun

Journal:

EPL (Europhysics Letters)

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

98

NCC-AUC: an AUC optimization method to identify multi-biomarker panel for cancer prognosis from genomic and clinical data

Zou, Meng, Liu, Zhaoqi, Zhang, Xiang-Sun, Wang, Yong

Journal:

Year:

2015

Language:

english

File:

PDF, 522 KB

english, 2015

99

Erratum: Quantitative function for community detection [Phys. Rev. E 77 , 036109 (2008)]

Li, Zhenping, Zhang, Shihua, Wang, Rui-Sheng, Zhang, Xiang-Sun, Chen, Luonan

Journal:

Physical Review E

Year:

2015

Language:

english

File:

PDF, 520 KB

english, 2015

100

[IEEE 2006 International Conference of the IEEE Engineering in Medicine and Biology Society - New York, NY, USA (2006.08.30-2006.09.3)] 2006 International Conference of the IEEE Engineering in Medicine and Biology Society - Alignment of Protein Interaction Networks by Integer Quadratic Programming

Li, Zhenping, Wang, Yong, Zhang, Shihua, Zhang, Xiang-Sun, Chen, Luonan

Year:

2006

Language:

english

File:

PDF, 161 KB

english, 2006

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