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1

Bivalent Peptides as Models for Multimeric Targets of PDZ Domains

Marcin Paduch, Monika Biernat, Piotr Stefanowicz, Zygmunt S. Derewenda, Zbigniew Szewczuk, Jacek Otlewski

Journal:

Year:

2007

Language:

english

File:

PDF, 471 KB

english, 2007

2

Catalysis at the interface: the anatomy of a conformational change in a triglyceride lipase

Derewenda, Urszula, Brzozowski, Andrzej M., Lawson, David M., Derewenda, Zygmunt S.

Journal:

Year:

1992

Language:

english

File:

PDF, 1.03 MB

english, 1992

3

Homologs of the α- and β-subunits of mammalian brain platelet-activating factor acetylhydrolase Ib in the Drosophila melanogaster genome

Peter J. Sheffield, Sarah Garrard, Michal Caspi, Junken Aoki, Hiroyuki Arai, Urszula Derewenda, Keizo Inoue, Beat Suter, Orly Reiner, Zygmunt S. Derewenda

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 222 KB

english, 2000

4

Biochemical and molecular biological characterization of a lipase produced by the fungus Rhizopus delemar

Michael J. Haas, David G. Bailey, Wilber Baker, Thomas R. Berka, David J. Cichowicz, Zygmunt S. Derewenda, Robert R. Genuario, Rolf D. Joerger, Robert R. Klein, Karen Scott, Deborah J. Woolf

Journal:

European Journal of Lipid Science and Technology

Year:

1999

Language:

english

File:

PDF, 58 KB

english, 1999

5

Substrate-selectivity in acylhydrolases: a cautionary tale

Zygmunt S Derewenda

Journal:

Colloids and Surfaces B: Biointerfaces

Year:

2002

Language:

english

File:

PDF, 105 KB

english, 2002

6

On the mechanism of autoinhibition of the RhoA-specific nucleotide exchange factor PDZRhoGEF

Meiying Zheng, Tomasz Cierpicki, Ko Momotani, Mykhaylo V Artamonov, Urszula Derewenda, John H Bushweller, Avril V Somlyo, Zygmunt S Derewenda

Journal:

BMC Structural Biology

Year:

2009

Language:

english

File:

PDF, 3.31 MB

english, 2009

7

The solution structure and dynamics of the DH-PH module of PDZRhoGEF in isolation and in complex with nucleotide-free RhoA

Tomasz Cierpicki, Jakub Bielnicki, Meiying Zheng, Jakub Gruszczyk, Marta Kasterka, Maxim Petoukhov, Aming Zhang, Erik J. Fernandez, Dmitri I. Svergun, Urszula Derewenda, John H. Bushweller, Zygmunt S.

Journal:

Protein Science

Year:

2009

Language:

english

File:

PDF, 1.10 MB

english, 2009

8

B. subtilis ykuD protein at 2.0 Å resolution: Insights into the structure and function of a novel, ubiquitous family of bacterial enzymes

Jakub Bielnicki, Yancho Devedjiev, Urszula Derewenda, Zbigniew Dauter, Andrzej Joachimiak, Zygmunt S. Derewenda

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 480 KB

english, 2006

9

The DC-module of doublecortin: Dynamics, domain boundaries, and functional implications

Tomasz Cierpicki, Myung Hee Kim, David R. Cooper, Urszula Derewenda, John H. Bushweller, Zygmunt S. Derewenda

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 363 KB

english, 2006

10

Crystallization and preliminary crystallographic studies of the precursor and mature forms of a neutral lipase from the fungus Rhizopus delemar

Lora Swenson, Ruth Green, Rolf Joerger, Michael Haas, Karen Scott, Yunyi Wei, Urszula Derewenda, David M. Lawson, Dr. Zygmunt S. Derewenda

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1994

Language:

english

File:

PDF, 512 KB

english, 1994

11

Structure of the gangrene α-toxin: the beauty in the beast

Derewenda, Zygmunt S., Martin, T.W.

Journal:

Natural Structural Biology

Year:

1998

Language:

english

File:

PDF, 429 KB

english, 1998

12

Bonding of molecular oxygen to T state human haemoglobin

Brzozowski, Andrzej, Derewenda, Zygmunt, Dodson, Eleanor, Dodson, Guy, Grabowski, Mieczyslaw, Liddington, Robert, Skarżyński, Tadeusz, Vallely, David

Journal:

Year:

1984

File:

PDF, 355 KB

1984

13

Structure of the liganded T state of haemoglobin identifies the origin of cooperative oxygen binding

Liddington, Robert, Derewenda, Zygmunt, Dodson, Guy, Harris, Deborah

Journal:

Year:

1988

File:

PDF, 364 KB

1988

14

High-resolution (1.5 Å) crystal structure of phospholipase C from Bacillus cereus

Hough, Edward, Hansen, Lars Kristian, Birknes, Bjørn, Jynge, Knut, Hansen, Sissel, Hordvik, Asbjørn, Little, Clive, Dodson, Eleanor, Derewenda, Zygmunt

Journal:

Year:

1989

File:

PDF, 482 KB

1989

15

A serine protease triad forms the catalytic centre of a triacylglycerol lipase

Turkenburg, Johan P., Christiansen, Lars, Huge-Jensen, Birgitte, Norskov, Leif, Brady, Leo, Brzozowski, Andrzej M., Derewenda, Zygmunt S., Dodson, Eleanor, Dodson, Guy, Tolley, Shirley

Journal:

Year:

1990

File:

PDF, 341 KB

1990

16

10.1038/7576

Derewenda, Zygmunt S., Wei, Yunyi, Contreras, Juan Antonio, Sheffield, Peter, Osterlund, Torben, Derewenda, Urszula, Kneusel, R.E., Matern, Ulrich, Holm, Cecilia

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 444 KB

english, 1999

17

10.1038/76776

Derewenda, Zygmunt S., Li, Jia, Derewenda, Urszula, Dauter, Zbigniew, Smith, Stuart

Journal:

Natural Structural Biology

Year:

2000

Language:

english

File:

PDF, 2.18 MB

english, 2000

18

10.1038/8195

Martin, T.W., Derewenda, Zygmunt S.

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 214 KB

english, 1999

19

A novel variant of the catalytic triad in the Streptomyces scabies esterase

Wei, Yunyi, Schottel, Janet L., Derewenda, Urszula, Swenson, Lora, Patkar, Shamkant, Derewenda, Zygmunt S.

Journal:

Natural Structural Biology

Year:

1995

File:

PDF, 825 KB

1995

20

A twist in the tale of lipolytic enzymes

Derewenda, Zygmunt S.

Journal:

Natural Structural Biology

Year:

1995

File:

PDF, 461 KB

1995

21

Crystal structure of RhoA–GDP and its functional implications

Wei, Yunyi, Zhang, Yan, Derewenda, Urszula, Liu, Xiaopu, Minor, Wladek, Nakamoto, Robert K., Somlyo, Avril V., Somlyo, Andrew P., Derewenda, Zygmunt S.

Journal:

Natural Structural Biology

Year:

1997

File:

PDF, 1.34 MB

1997

22

Letter to the Editor: Assignment of1H,13C and15N resonances of the N-terminal microtubule-binding domain of human doublecortin

Tomasz Cierpicki, Myung Hee Kim, Jacek Otlewski, Zygmunt S. Derewenda, John H. Bushweller

Journal:

Journal of Biomolecular NMR

Year:

2003

Language:

english

File:

PDF, 49 KB

english, 2003

23

Toward rational protein crystallization: A Web server for the design of crystallizable protein variants

Lukasz Goldschmidt, David R. Cooper, Zygmunt S. Derewenda, David Eisenberg

Journal:

Protein Science

Year:

2007

Language:

english

File:

PDF, 302 KB

english, 2007

24

The Structure of Yersinia pestis V-Antigen, an Essential Virulence Factor and Mediator of Immunity against Plague

Urszula Derewenda, Agnieszka Mateja, Yancho Devedjiev, Karen M. Routzahn, Artem G. Evdokimov, Zygmunt S. Derewenda, David S. Waugh

Journal:

Year:

2004

Language:

english

File:

PDF, 423 KB

english, 2004

25

Rational Protein Crystallization by Mutational Surface Engineering

Zygmunt S. Derewenda

Journal:

Year:

2004

Language:

english

File:

PDF, 1.36 MB

english, 2004

26

The Structure of the N-Terminal Domain of the Product of the Lissencephaly Gene Lis1 and Its Functional Implications

Myung Hee Kim, David R. Cooper, Arkadiusz Oleksy, Yancho Devedjiev, Urszula Derewenda, Orly Reiner, Jacek Otlewski, Zygmunt S. Derewenda

Journal:

Year:

2004

Language:

english

File:

PDF, 753 KB

english, 2004

27

The Crystal Structure of the Reduced, Zn2+-Bound Form of the B. subtilis Hsp33 Chaperone and Its Implications for the Activation Mechanism

Izabela Janda, Yancho Devedjiev, Urszula Derewenda, Zbigniew Dauter, Jakub Bielnicki, David R. Cooper, Paul C.F. Graf, Andrzej Joachimiak, Ursula Jakob, Zygmunt S. Derewenda

Journal:

Year:

2004

Language:

english

File:

PDF, 447 KB

english, 2004

28

The Crystal Structure of RhoA in Complex with the DH/PH Fragment of PDZRhoGEF, an Activator of the Ca2+ Sensitization Pathway in Smooth Muscle

Urszula Derewenda, Arkadiusz Oleksy, Andra S. Stevenson, Justyna Korczynska, Zbigniew Dauter, Andrew P. Somlyo, Jacek Otlewski, Avril V. Somlyo, Zygmunt S. Derewenda

Journal:

Year:

2004

Language:

english

File:

PDF, 955 KB

english, 2004

29

Probing the Supramodular Architecture of a Multidomain Protein: The Structure of Syntenin in Solution

Tomasz Cierpicki, John H. Bushweller, Zygmunt S. Derewenda

Journal:

Year:

2005

Language:

english

File:

PDF, 403 KB

english, 2005

30

The Structure of the Coiled-Coil Domain of Ndel1 and the Basis of Its Interaction with Lis1, the Causal Protein of Miller-Dieker Lissencephaly

Urszula Derewenda, Cataldo Tarricone, Won Chan Choi, David R. Cooper, Steve Lukasik, Franco Perrina, Ashutosh Tripathy, Myung Hee Kim, David S. Cafiso, Andrea Musacchio, Zygmunt S. Derewenda

Journal:

Year:

2007

Language:

english

File:

PDF, 2.27 MB

english, 2007

31

Crystal Structure of the Human Acyl Protein Thioesterase I from a Single X-Ray Data Set to 1.5 Å

Yancho Devedjiev, Zbigniew Dauter, Sergey R. Kuznetsov, Teresa L.Z. Jones, Zygmunt S. Derewenda

Journal:

Year:

2000

Language:

english

File:

PDF, 1.36 MB

english, 2000

32

Structure of the RGS-like Domain from PDZ-RhoGEF: Linking Heterotrimeric G Protein-Coupled Signaling to Rho GTPases

Kenton L. Longenecker, Mary E. Lewis, Hiroki Chikumi, J.Silvio Gutkind, Zygmunt S. Derewenda

Journal:

Year:

2001

Language:

english

File:

PDF, 756 KB

english, 2001

33

Molecular Basis of Mitomycin C Resistance in Streptomyces: Structure and Function of the MRD Protein

T.W Martin, Zbigniew Dauter, Yancho Devedjiev, Peter Sheffield, Filip Jelen, Min He, David H Sherman, Jacek Otlewski, Zygmunt S Derewenda, Urszula Derewenda

Journal:

Year:

2002

Language:

english

File:

PDF, 563 KB

english, 2002

34

PDZ Tandem of Human Syntenin: Crystal Structure and Functional Properties

Beom Sik Kang, David R. Cooper, Filip Jelen, Yancho Devedjiev, Urszula Derewenda, Zbigniew Dauter, Jacek Otlewski, Zygmunt S. Derewenda

Journal:

Year:

2003

Language:

english

File:

PDF, 454 KB

english, 2003

35

Molecular Roots of Degenerate Specificity in Syntenin's PDZ2 Domain: Reassessment of the PDZ Recognition Paradigm

Beom Sik Kang, David R. Cooper, Yancho Devedjiev, Urszula Derewenda, Zygmunt S. Derewenda

Journal:

Year:

2003

Language:

english

File:

PDF, 294 KB

english, 2003

36

Structure of a microbial homologue of mammalian platelet-activating factor acetylhydrolases: Streptomyces exfoliatus lipase at 1.9 å resolution

Yunyi Wei, Lora Swenson, Clementina Castro, Urszula Derewenda, Wladek Minor, Hiroyuki Arai, Junken Aoki, Keizo Inoue, Luis Servin-Gonzalez, Zygmunt S Derewenda

Journal:

Year:

1998

Language:

english

File:

PDF, 717 KB

english, 1998

37

Crystallization of Thioesterase II from Escherichia coli

Lora Swenson, Ruth Green, Stuart Smith, Zygmunt S. Derewenda

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 148 KB

1994

38

Crystallization of the Malonyl Coenzyme A-Acyl Carrier Protein Transacylase from Escherichia coli

Laurence Serre, Lora Swenson, Ruth Green, Yunju Wei, Ira I.G.S. Verwoert, Elizabeth C. Verbree, Antoine R. Stuitje, Zygmunt S. Derewenda

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 245 KB

1994

39

The Occurence of C–H · · · O Hydrogen Bonds in Proteins

Zygmunt S. Derewenda, Linda Lee, Urszula Derewenda

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 1.73 MB

english, 1995

40

Overcoming Expression and Purification Problems of RhoGDI Using a Family of “Parallel” Expression Vectors

Peter Sheffield, Sarah Garrard, Zygmunt Derewenda

Journal:

Protein Expression and Purification

Year:

1999

Language:

english

File:

PDF, 154 KB

english, 1999

41

Expression, Purification, and Crystallization of the RGS-like Domain from the Rho Nucleotide Exchange Factor, PDZ-RhoGEF, Using the Surface Entropy Reduction Approach

Sarah M. Garrard, Kenton L. Longenecker, Mary E. Lewis, Peter J. Sheffield, Zygmunt S. Derewenda

Journal:

Protein Expression and Purification

Year:

2001

Language:

english

File:

PDF, 288 KB

english, 2001

42

The crystal and molecular structure of the Rhizomucor miehei triacylglyceride lipase at 1.9 Å resolution

Zygmunt S. Derewenda, Urszula Derewenda, Guy G. Dodson

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 2.02 MB

english, 1992

43

High resolution crystal structures and comparisons of T-state deoxyhaemoglobin and two liganded T-State haemoglobins: T(α-oxy)haemoglobin and T(met)haemoglobin

Robert Liddington, Zygmunt Derewenda, Eleanor Dodson, Rod Hubbard, Guy Dodson

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 15.46 MB

english, 1992

44

Expression, purification and crystallization of the Vibrio harveyi acyltransferase

Lora Swenson, Stefano R. Ferri, Ruth Green, Allan M. Sharp, Edward A. Meighen, Zygmunt S. Derewenda

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 377 KB

english, 1992

45

Crystallization and preliminary crystallographic data of a Streptomyces scabies extracellular esterase

Ruth Green, Janet L. Schottel, Lora Swenson, Yunyi Wei, Zygmunt S. Derewenda

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 376 KB

english, 1992

46

The PDZ2 Domain of Syntenin at Ultra-high Resolution: Bridging the Gap Between Macromolecular and Small Molecule Crystallography

Beom Sik Kang, Yancho Devedjiev, Urszula Derewenda, Zygmunt S. Derewenda

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 2.00 MB

english, 2004

47

Corrigendum to “The PDZ2 Domain of Syntenin at Ultra-high Resolution: Bridging the Gap Between Macromolecular and Small Molecule Crystallography”: [J. Mol. Biol. (2004) 338, 483–493]

Beom Sik Kang, Yancho Devedjiev, Urszula Derewenda, Zygmunt S. Derewenda

Journal:

Journal of Molecular Biology

Year:

2004

File:

PDF, 43 KB

2004

48

The Structure and Ligand Binding Properties of the B. subtilis YkoF Gene Product, a Member of a Novel Family of Thiamin/HMP-binding Proteins

Yancho Devedjiev, Yogesh Surendranath, Urszula Derewenda, Alexandra Gabrys, David R. Cooper, Rong-guang Zhang, Lour Lezondra, Andrzej Joachimiak, Zygmunt S. Derewenda

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 838 KB

english, 2004

49

The Dimerization Mechanism of LIS1 and its Implication for Proteins Containing the LisH Motif

Agnieszka Mateja, Tomasz Cierpicki, Marcin Paduch, Zygmunt S. Derewenda, Jacek Otlewski

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 499 KB

english, 2006

50

Structural Features and Chaperone Activity of the NudC Protein Family

Meiying Zheng, Tomasz Cierpicki, Alexander J. Burdette, Darkhan Utepbergenov, Paweł Ł. Janczyk, Urszula Derewenda, P. Todd Stukenberg, Kim A. Caldwell, Zygmunt S. Derewenda

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.15 MB

english, 2011