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1

The Functional Network of the Arabidopsis Plastoglobule Proteome Based on Quantitative Proteomics and Genome-Wide Coexpression Analysis

Peter K. Lundquist, Anton Poliakov, Nazmul H. Bhuiyan, Boris Zybailov, Qi Sun and Klaas J. van Wijk

Journal:

PLANT PHYSIOLOGY

Year:

2012

Language:

english

File:

PDF, 4.28 MB

english, 2012

2

Central Functions of the Lumenal and Peripheral Thylakoid Proteome of Arabidopsis Determined by Experimentation and Genome-Wide Prediction

Jean-Benoît Peltier, Olof Emanuelsson, Dário E. Kalume, Jimmy Ytterberg, Giulia Friso, Andrea Rudella, David A. Liberles, Linda Söderberg, Peter Roepstorff, Gunnar von Heijne and Klaas J. van Wijk

Journal:

Year:

2002

Language:

english

File:

PDF, 4.67 MB

english, 2002

3

Analyses of the secretomes of Erwinia amylovora and selected hrp mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels

RIITTA M. NISSINEN, A. JIMMY YTTERBERG, ADAM J. BOGDANOVE, KLAAS J. VAN WIJK, STEVEN V. BEER

Journal:

Molecular Plant Pathology

Year:

2007

Language:

english

File:

PDF, 251 KB

english, 2007

4

Protein Maturation and Proteolysis in Plant Plastids, Mitochondria, and Peroxisomes

van Wijk, Klaas J.

Journal:

Annual Review of Plant Biology

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

5

Developmental and Subcellular Organization of Single-Cell C 4 Photosynthesis in Bienertia sinuspersici Determined by Large-Scale Proteomics and cDNA Assembly from 454 DNA Sequencing

Offermann, Sascha, Friso, Giulia, Doroshenk, Kelly A., Sun, Qi, Sharpe, Richard M., Okita, Thomas W., Wimmer, Diana, Edwards, Gerald E., van Wijk, Klaas J.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.45 MB

english, 2015

6

Plastoglobuli: Plastid Microcompartments with Integrated Functions in Metabolism, Plastid Developmental Transitions, and Environmental Adaptation

van Wijk, Klaas J., Kessler, Felix

Journal:

Annual Review of Plant Biology

Year:

2017

Language:

english

File:

PDF, 4.34 MB

english, 2017

7

Host Defense Skin Peptides Vary with Color Pattern in the Highly Polymorphic Red-Eyed Treefrog

Davis, Leyla R., Klonoski, Karina, Rutschow, Heidi L., Van Wijk, Klaas J., Sun, Qi, Haribal, Meena M., Saporito, Ralph A., Vega, Andres, Rosenblum, Erica B., Zamudio, Kelly R., Robertson, Jeanne M.

Journal:

Frontiers in Ecology and Evolution

Year:

2016

Language:

english

File:

PDF, 2.01 MB

english, 2016

8

In vivo trapping of proteins interacting with the chloroplast CLPC1 chaperone; potential substrates and adaptors

Montandon, Cyrille, Friso, Giulia, Liao, Jui-Yun Rei, Choi, Junsik, van Wijk, Klaas J.

Journal:

Journal of Proteome Research

Year:

2019

Language:

english

File:

PDF, 2.05 MB

english, 2019

9

Animal study on surface-modified defibrillator systems: Indications for enhanced infection resistance

Pauline B. van Wachem, Linda A. Brouwer, Geert Kors, Freark Dijk, Klaas Bel, Jan Elstrodt, Frank van Wijk, Patrick T. Cahalan, Marc Hendriks, Marja J. A. van Luyn

Journal:

Journal of Biomedical Materials Research Part B: Applied Biomaterials

Year:

2001

Language:

english

File:

PDF, 645 KB

english, 2001

10

Plastid proteomics

Klaas J. van Wijk

Journal:

Plant Physiology and Biochemistry

Year:

2004

Language:

english

File:

PDF, 676 KB

english, 2004

11

Genetic analysis of the concentrations of pyrrolizidine alkaloids in Senecio jacobaea

Klaas Vrieling, Helene de Vos, Catharina A.M. van Wijk

Journal:

Year:

1993

Language:

english

File:

PDF, 416 KB

english, 1993

12

Time to articulate a vision for the future of plant proteomics – A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO)

Ganesh Kumar Agrawal, Dominique Job, Michel Zivy, Vishwanath P. Agrawal, Ralph A. Bradshaw, Michael J. Dunn, Paul A. Haynes, Klaas J. van Wijk, Shoshi Kikuchi, Jenny Renaut, Wolfram Weckwerth, Randeep

Journal:

Year:

2011

Language:

english

File:

PDF, 744 KB

english, 2011

13

Photoinhibition of photosystem II in vivo is preceded by down-regulation through light-induced acidification of the lumen: Consequences for the mechanism of photoinhibition in vivo

Klaas J. van Wijk, Philip R. van Hasselt

Journal:

Year:

1993

Language:

english

File:

PDF, 1.14 MB

english, 1993

14

Arabidopsis thalianadeficient in two chloroplast ascorbate peroxidases shows accelerated light-induced necrosis when levels of cellular ascorbate are low

Lisa Giacomelli, Antonio Masi, Daniel R. Ripoll, Mi Ja Lee, Klaas J. van Wijk

Journal:

Plant Molecular Biology

Year:

2007

Language:

english

File:

PDF, 791 KB

english, 2007

15

Affinity purification of the tobacco plastid RNA polymerase and in vitro reconstitution of the holoenzyme

Jon Y. Suzuki, A. Jimmy Ytterberg, Thomas A. Beardslee, Lori A. Allison, Klaas Jan van Wijk, Pal Maliga

Journal:

The Plant Journal

Year:

2004

Language:

english

File:

PDF, 288 KB

english, 2004

16

Kinetic resolution of different recovery phases of photoinhibited photosystem II in cold-acclimated and non-acclimated spinach leaves

Klaas J. van Wijk, Philip R. van Hasselt

Journal:

Physiologia Plantarum

Year:

1993

Language:

english

File:

PDF, 906 KB

english, 1993

17

Testing trade-offs among growth, regrowth and anti-herbivore defences in Senecio jacobaea

Klaas Vrieling, Tom J. De Jong, Peter G. L. Klinkhamer, Eddy VAN DER Meijden, Catharina A. M. van der Veen-van Wijk

Journal:

Entomologia Experimentalis et Applicata

Year:

1996

Language:

english

File:

PDF, 287 KB

english, 1996

18

The chloroplast ClpP complex in Chlamydomonas reinhardtii contains an unusual high molecular mass subunit with a large apical domain

Wojciech Majeran, Giulia Friso, Klaas Jan van Wijk, Olivier Vallon

Journal:

Year:

2005

Language:

english

File:

PDF, 597 KB

english, 2005

19

The Pathogen-Inducible Nitric Oxide Synthase (iNOS) in Plants Is a Variant of the P Protein of the Glycine Decarboxylase Complex

Meena R. Chandok, A.Jimmy Ytterberg, Klaas J. van Wijk, Daniel F. Klessig

Journal:

Year:

2003

Language:

english

File:

PDF, 626 KB

english, 2003

20

A scalable, GFP-based pipeline for membrane protein overexpression screening and purification

David Drew, Dirk-Jan Slotboom, Giulia Friso, Torsten Reda, Pierre Genevaux, Mikaela Rapp, Nadja M. Meindl-Beinker, Wietske Lambert, Mirjam Lerch, Daniel O. Daley, Klaas-Jan Van Wijk, Judy Hirst, Edmun

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 387 KB

english, 2005

21

The Clp protease system; a central component of the chloroplast protease network

Paul Dominic B. Olinares, Jitae Kim, Klaas J. van Wijk

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2011

Language:

english

File:

PDF, 772 KB

english, 2011

22

Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts

Zach Adam, Andrea Rudella, Klaas J van Wijk

Journal:

Current Opinion in Plant Biology

Year:

2006

Language:

english

File:

PDF, 217 KB

english, 2006

23

Studies on the Posttranscriptional Site of cAMP Action in the Regulation of the Synthesis of Tyrosine Aminotransferase

Gerry T. SNOEK, Klaas W. VAN DE POLL, Harry O. VOORMA, Roel VAN WIJK

Journal:

Year:

1981

Language:

english

File:

PDF, 539 KB

english, 1981

24

Transcriptional and Translational Adjustments of Psba Gene Expression in Mature Chloroplasts During Photoinhibition and Subsequent Repair of Photosystem II

Reetta Kettunen, Saijaliisa Pursiheimo, Eevi Rintamäki, Klaas-Jan VAN Wijk, Eva-Mari Aro

Journal:

Year:

1997

Language:

english

File:

PDF, 968 KB

english, 1997

25

Spectroscopic characterization of photoinhibited Photosystem II and kinetic resolution of the triggering of the D1 reaction center protein for degradation

Klaas J. van Wijk, Bertil Andersson, Stenbjörn Styring

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

1992

Language:

english

File:

PDF, 703 KB

english, 1992

26

Photoinhibition and recovery in relation to heterogeneity of Photosystem II

Klaas J. van Wijk, Bärbel Schnettger, Maria Graf, G.Heinrich Krause

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

1993

Language:

english

File:

PDF, 880 KB

english, 1993

27

Evidence for SecA- and ΔpH-independent insertion of D1 into thylakoids

Klaas Jan van Wijk, Tracy G. Knott, Colin Robinson

Journal:

Year:

1995

Language:

english

File:

PDF, 380 KB

english, 1995

28

Light is required for efficient translation elongation and subsequent integration of the D1-protein into Photosystem II

Klaas J. van Wijk, Lutz Eichacker

Journal:

Year:

1996

Language:

english

File:

PDF, 614 KB

english, 1996

29

The Pathogen-Inducible Nitric Oxide Synthase (iNOS) in Plants Is a Variant of the P Protein of the Glycine Decarboxylase Complex

Daniel F. Klessig, A.Jimmy Ytterberg, Klaas J. van Wijk

Journal:

Year:

2004

Language:

english

File:

PDF, 21 KB

english, 2004

30

Characterization of the Consequences of YidC Depletion on the Inner Membrane Proteome of E. coli Using 2D Blue Native/SDS-PAGE

David Wickström, Samuel Wagner, Per Simonsson, Ovidiu Pop, Louise Baars, A. Jimmy Ytterberg, Klaas J. van Wijk, Joen Luirink, Jan-Willem L. de Gier

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 530 KB

english, 2011

31

Plastoglobules: versatile lipoprotein particles in plastids

Claire Bréhélin, Felix Kessler, Klaas J. van Wijk

Journal:

Trends in Plant Science

Year:

2007

Language:

english

File:

PDF, 715 KB

english, 2007

32

Cell-type-specific differentiation of chloroplasts in C4 plants

Wojciech Majeran, Klaas J. van Wijk

Journal:

Trends in Plant Science

Year:

2009

Language:

english

File:

PDF, 854 KB

english, 2009

33

Immobilization of the first dimension in 2D blue native/SDS–PAGE allows the relative quantification of membrane proteomes

Mirjam Klepsch, Susan Schlegel, David Wickström, Giulia Friso, Klaas J. van Wijk, Jan-Olov Persson, Jan-Willem de Gier, Samuel Wagner

Journal:

Year:

2008

Language:

english

File:

PDF, 383 KB

english, 2008

34

Complementation of bacterial SecE by a chloroplastic homologue

Linda Fröderberg, Thomas Röhl, Klaas-Jan van Wijk, Jan-Willem L. de Gier

Journal:

Year:

2001

Language:

english

File:

PDF, 306 KB

english, 2001

35

Transient interaction of cpSRP54 with elongating nascent chains of the chloroplast-encoded D1 protein; ‘cpSRP54 caught in the act’

Robert Nilsson, Klaas Jan van Wijk

Journal:

Year:

2002

Language:

english

File:

PDF, 400 KB

english, 2002

36

Proteomics of the chloroplast: experimentation and prediction

Klaas Jan van Wijk

Journal:

Trends in Plant Science

Year:

2000

Language:

english

File:

PDF, 195 KB

english, 2000

37

ABC1K atypical kinases in plants: filling the organellar kinase void

Peter K. Lundquist, Jerrold I. Davis, Klaas J. van Wijk

Journal:

Trends in Plant Science

Year:

2012

Language:

english

File:

PDF, 1.23 MB

english, 2012

38

The combined use of photoaffinity labeling and surface plasmon resonance-based technology identifies multiple salicylic acid-binding proteins

Tian, Miaoying, von Dahl, Caroline C., Liu, Po-Pu, Friso, Giulia, van Wijk, Klaas J., Klessig, Daniel F.

Journal:

The Plant Journal

Year:

2012

Language:

english

File:

PDF, 1.16 MB

english, 2012

39

Synthesis and Assembly of the D1 Protein into Photosystem II: Processing of the C-Terminus and Identification of the Initial Assembly Partners and Complexes during Photosystem II Repair †

van Wijk, Klaas J., Roobol-Boza, Margrit, Kettunen, Reetta, Andersson, Bertil, Aro, Eva-Mari

Journal:

Year:

1997

Language:

english

File:

PDF, 298 KB

english, 1997

40

Construction of Plastid Reference Proteomes for Maize and Arabidopsis and Evaluation of Their Orthologous Relationships; The Concept of Orthoproteomics

Huang, Mingshu, Friso, Giulia, Nishimura, Kenji, Qu, Xian, Olinares, Paul Dominic B., Majeran, Wojciech, Sun, Qi, van Wijk, Klaas J.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.99 MB

english, 2013

41

Correlation of mRNA and protein abundance in the developing maize leaf

Ponnala, Lalit, Wang, Yupeng, Sun, Qi, van Wijk, Klaas J.

Journal:

The Plant Journal

Year:

2014

Language:

english

File:

PDF, 831 KB

english, 2014

42

Plant Proteomics Coming of Age

Komatsu, Setsuko, van Wijk, Klaas J.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 110 KB

english, 2012

43

The Multinational Arabidopsis Steering Subcommittee for Proteomics Assembles the Largest Proteome Database Resource for Plant Systems Biology

Weckwerth, Wolfram, Baginsky, Sacha, van Wijk, Klaas, Heazlewood, Joshua L., Millar, Harvey

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 116 KB

english, 2008

44

Workflow for Large Scale Detection and Validation of Peptide Modifications by RPLC-LTQ-Orbitrap: Application to the Arabidopsis thaliana Leaf Proteome and an Online Modified Peptide Library

Zybailov, Boris, Sun, Qi, van Wijk, Klaas J.

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 868 KB

english, 2009

45

Stepwise Deamidation of Ribonuclease A at Five Sites Determined by Top Down Mass Spectrometry †

Zabrouskov, Vlad, Han, Xuemei, Welker, Ervin, Zhai, Huili, Lin, Cheng, van Wijk, Klaas J., Scheraga, Harold A., McLafferty, Fred W.

Journal:

Year:

2006

Language:

english

File:

PDF, 126 KB

english, 2006

46

The Clp protease system is required for copper ion-dependent turnover of the PAA2/HMA8 copper transporter in chloroplasts

Tapken, Wiebke, Kim, Jitae, Nishimura, Kenji, van Wijk, Klaas J., Pilon, Marinus

Journal:

New Phytologist

Year:

2015

Language:

english

File:

PDF, 563 KB

english, 2015

47

Organization, function and substrates of the essential Clp protease system in plastids

Nishimura, Kenji, van Wijk, Klaas J.

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2015

Language:

english

File:

PDF, 2.35 MB

english, 2015

48

MET1 Is a Thylakoid-Associated TPR Protein Involved in Photosystem II Supercomplex Formation and Repair in Arabidopsis

Bhuiyan, Nazmul H., Friso, Giulia, Poliakov, Anton, Ponnala, Lalit, van Wijk, Klaas J.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.45 MB

english, 2015

49

Salicylic Acid Inhibits the Replication of Tomato bushy stunt virus by Directly Targeting a Host Component in the Replication Complex

Tian, Miaoying, Sasvari, Zsuzsanna, Gonzalez, Paulina Alatriste, Friso, Giulia, Rowland, Elden, Liu, Xiao-Min, van Wijk, Klaas J., Nagy, Peter D., Klessig, Daniel F.

Journal:

Molecular Plant-Microbe Interactions

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

50

Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts

Kim, Jitae, Kimber, Matthew S., Nishimura, Kenji, Friso, Giulia, Schultz, Lance, Ponnala, Lalit, van Wijk, Klaas J.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015