Journal of Biomedical Informatics

1

Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation

Marcelo Fiszman, Dina Demner-Fushman, Halil Kilicoglu, Thomas C. Rindflesch

Journal:

Year:

2009

Language:

english

File:

PDF, 612 KB

english, 2009

2

Specializing for predicting obesity and its co-morbidities

Ira Goldstein, Özlem Uzuner

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 354 KB

english, 2009

3

Porting a lexicalized-grammar parser to the biomedical domain

Laura Rimell, Stephen Clark

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 450 KB

english, 2009

4

Automatically extracting cancer disease characteristics from pathology reports into a Disease Knowledge Representation Model

Anni Coden, Guergana Savova, Igor Sominsky, Michael Tanenblatt, James Masanz, Karin Schuler, James Cooper, Wei Guan, Piet C. de Groen

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 582 KB

english, 2009

5

Improving accuracy for identifying related PubMed queries by an integrated approach

Zhiyong Lu, W. John Wilbur

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 336 KB

english, 2009

6

A recent advance in the automatic indexing of the biomedical literature

Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, James G. Mork, Alan R. Aronson

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 492 KB

english, 2009

7

Towards role-based filtering of disease outbreak reports

Son Doan, Ai Kawazoe, Mike Conway, Nigel Collier

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 340 KB

english, 2009

8

Towards identifying intervention arms in randomized controlled trials: Extracting coordinating constructions

Grace Yuet-Chee Chung

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 375 KB

english, 2009

9

Feature selection techniques for maximum entropy based biomedical named entity recognition

Sujan Kumar Saha, Sudeshna Sarkar, Pabitra Mitra

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 182 KB

english, 2009

10

Building a semantically annotated corpus of clinical texts

Angus Roberts, Robert Gaizauskas, Mark Hepple, George Demetriou, Yikun Guo, Ian Roberts, Andrea Setzer

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 502 KB

english, 2009

11

Collaborative text-annotation resource for disease-centered relation extraction from biomedical text

C. Cano, T. Monaghan, A. Blanco, D.P. Wall, L. Peshkin

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 1.36 MB

english, 2009

12

Tracking medical students’ clinical experiences using natural language processing

Joshua C. Denny, Lisa Bastarache, Elizabeth Ann Sastre, Anderson Spickard III

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 397 KB

english, 2009

13

Text-mining approach to evaluate terms for ontology development

Lam C. Tsoi, Ravi Patel, Wenle Zhao, W. Jim Zheng

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 415 KB

english, 2009

14

The value of parsing as feature generation for gene mention recognition

Larry H. Smith, W. John Wilbur

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 442 KB

english, 2009

15

Assigning roles to protein mentions: The case of transcription factors

Hui Yang, John Keane, Casey M. Bergman, Goran Nenadic

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 193 KB

english, 2009

16

Using UMLS to construct a generalized hierarchical concept-based dictionary of brain functions for information extraction from the fMRI literature

Mei-Yu Hsiao, Chien-Chung Chen, Jyh-Horng Chen

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

17

ConText: An algorithm for determining negation, experiencer, and temporal status from clinical reports

Henk Harkema, John N. Dowling, Tyler Thornblade, Wendy W. Chapman

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 509 KB

english, 2009

18

Feature generation and representations for protein–protein interaction classification

Man Lan, Chew Lim Tan, Jian Su

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 170 KB

english, 2009

19

Rule-based information extraction from patients’ clinical data

Agnieszka Mykowiecka, Małgorzata Marciniak, Anna Kupść

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 875 KB

english, 2009

20

What can natural language processing do for clinical decision support?

Dina Demner-Fushman, Wendy W. Chapman, Clement J. McDonald

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 612 KB

english, 2009

21

Current issues in biomedical text mining and natural language processing

Wendy W. Chapman, K. Bretonnel Cohen

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 128 KB

english, 2009

22

Ed Board

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 41 KB

english, 2009

23

Volume 42; Issue 5

Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation

Specializing for predicting obesity and its co-morbidities

Porting a lexicalized-grammar parser to the biomedical domain

Automatically extracting cancer disease characteristics from pathology reports into a Disease Knowledge Representation Model

Improving accuracy for identifying related PubMed queries by an integrated approach

A recent advance in the automatic indexing of the biomedical literature

Towards role-based filtering of disease outbreak reports

Towards identifying intervention arms in randomized controlled trials: Extracting coordinating constructions

Feature selection techniques for maximum entropy based biomedical named entity recognition

Building a semantically annotated corpus of clinical texts

Collaborative text-annotation resource for disease-centered relation extraction from biomedical text

Tracking medical students’ clinical experiences using natural language processing

Text-mining approach to evaluate terms for ontology development

The value of parsing as feature generation for gene mention recognition

Assigning roles to protein mentions: The case of transcription factors

Using UMLS to construct a generalized hierarchical concept-based dictionary of brain functions for information extraction from the fMRI literature

ConText: An algorithm for determining negation, experiencer, and temporal status from clinical reports

Feature generation and representations for protein–protein interaction classification

Rule-based information extraction from patients’ clinical data

What can natural language processing do for clinical decision support?

Current issues in biomedical text mining and natural language processing

Ed Board

Table of Contents