Volume 11; Issue 1

Journal of Computational Biology

Volume 11; Issue 1

1

FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions

Shatsky, Maxim, Nussinov, Ruth, Wolfson, Haim J.

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 944 KB

english, 2004

2

From a Phylogenetic Tree to a Reticulated Network

Makarenkov, Vladimir, Legendre, Pierre

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 518 KB

english, 2004

3

1001 Optimal PDB Structure Alignments: Integer Programming Methods for Finding the Maximum Contact Map Overlap

Caprara, Alberto, Carr, Robert, Istrail, Sorin, Lancia, Giuseppe, Walenz, Brian

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 614 KB

english, 2004

4

Gene Clustering Based on Clusterwide Mutual Information

Zhou, Xiaobo, Wang, Xiaodong, Dougherty, Edward R., Russ, Daniel, Suh, Edward

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 524 KB

english, 2004

5

An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes

Adamiak, R. W., Blazewicz, J., Formanowicz, P., Gdaniec, Z., Kasprzak, M., Popenda, M., Szachniuk, M.

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 864 KB

english, 2004

6

Reconstructing Pathways in Large Genetic Networks from Genetic Perturbations

Wagner, Andreas

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 193 KB

english, 2004

7

Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification

Huang, Haiyan, Kao, Ming-Chih J., Zhou, Xianghong, Liu, Jun S., Wong, Wing H.

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 429 KB

english, 2004

8

Transition Priors for Protein Hidden Markov Models: An Empirical Study towards Maximum Discrimination

Wistrand, Markus, Sonnhammer, Erik L. L.

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 448 KB

english, 2004

9

Use of Runs Statistics for Pattern Recognition in Genomic DNA Sequences

Cheung, Leo Wang-Kit

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 513 KB

english, 2004

10

A Local Alignment Metric for Accelerating Biosequence Database Search

Spiro, Peter A., Macura, Natasa

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 265 KB

english, 2004

11

Incremental Paradigms of Motif Discovery

Apostolico, Alberto, Parida, Laxmi

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 227 KB

english, 2004

12

Genomewide Conserved Epitope Profiles of HIV-1 Predicted by Biophysical Properties of MHC Binding Peptides

Sung, Myong-Hee, Simon, Richard

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 1.32 MB

english, 2004