Volume 10; Issue 12

Journal of Proteome Research

Volume 10; Issue 12

1

Label-Free Quantitative Proteomics Analysis of Cotton Leaf Response to Nitric Oxide

Meng, Yanyan, Liu, Feng, Pang, Chaoyou, Fan, Shuli, Song, Meizhen, Wang, Dan, Li, Weihua, Yu, Shuxun

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 3.69 MB

english, 2011

2

Proteomic Identification of Protease Cleavage Sites Characterizes Prime and Non-prime Specificity of Cysteine Cathepsins B, L, and S

Biniossek, Martin L., Nägler, Dorit K., Becker-Pauly, Christoph, Schilling, Oliver

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 1.18 MB

english, 2011

3

Systems-wide Proteomic Analysis in Mammalian Cells Reveals Conserved, Functional Protein Turnover

Cambridge, Sidney B., Gnad, Florian, Nguyen, Chuong, Bermejo, Justo Lorenzo, Krüger, Marcus, Mann, Matthias

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 1009 KB

english, 2011

4

Proteomic Characterization of Specific Minor Proteins in the Human Milk Casein Fraction

Liao, Yalin, Alvarado, Rudy, Phinney, Brett, Lönnerdal, Bo

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 754 KB

english, 2011

5

Metabolic Phenotyping of the Crohn's Disease-like IBD Etiopathology in the TNF ΔARE/WT Mouse Model

Baur, Pia, Martin, François-Pierre, Gruber, Lisa, Bosco, Nabil, Brahmbhatt, Viral, Collino, Sebastiano, Guy, Philippe, Montoliu, Ivan, Rozman, Jan, Klingenspor, Martin, Tavazzi, Isabelle, Thorimbert,

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 1.43 MB

english, 2011

6

Sense and Nonsense of Pathway Analysis Software in Proteomics

Müller, Thorsten, Schrötter, Andreas, Loosse, Christina, Helling, Stefan, Stephan, Christian, Ahrens, Maike, Uszkoreit, Julian, Eisenacher, Martin, Meyer, Helmut E., Marcus, Katrin

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.98 MB

english, 2011

7

Yersinia High Pathogenicity Island Genes Modify the Escherichia coli Primary Metabolome Independently of Siderophore Production

Lv, Haitao, Henderson, Jeffrey P.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 3.53 MB

english, 2011

8

The Footprints of Gut Microbial–Mammalian Co-Metabolism

Zheng, Xiaojiao, Xie, Guoxiang, Zhao, Aihua, Zhao, Linjing, Yao, Chun, Chiu, Norman H. L., Zhou, Zhanxiang, Bao, Yuqian, Jia, Weiping, Nicholson, Jeremy K., Jia, Wei

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 4.07 MB

english, 2011

9

Two-Dimensional Target Decoy Strategy for Shotgun Proteomics

Bern, Marshall W., Kil, Yong J.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.02 MB

english, 2011

10

Metabolomic Profiling to Identify Potential Serum Biomarkers for Schizophrenia and Risperidone Action

Xuan, Jiekun, Pan, Guihua, Qiu, Yunping, Yang, Lun, Su, Mingming, Liu, Yumin, Chen, Jian, Feng, Guoyin, Fang, Yiru, Jia, Wei, Xing, Qinghe, He, Lin

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.92 MB

english, 2011

11

Quantitative Proteomic Analysis Revealed Lovastatin-induced Perturbation of Cellular Pathways in HL-60 Cells

Dong, Xiaoli, Xiao, Yongsheng, Jiang, Xinning, Wang, Yinsheng

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 839 KB

english, 2011

12

Accounting for Control Mislabeling in Case–Control Biomarker Studies

Rantalainen, Mattias, Holmes, Chris C.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 925 KB

english, 2011

13

Analysis of Secretome Changes Uncovers an Autocrine/Paracrine Component in the Modulation of Cell Proliferation and Motility by c-Myc

Pocsfalvi, Gabriella, Votta, Giuseppina, De Vincenzo, Anna, Fiume, Immacolata, Raj, Delfin Albert Amal, Marra, Giancarlo, Stoppelli, Maria Patrizia, Iaccarino, Ingram

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.61 MB

english, 2011

14

Analysis of the Resolution Limitations of Peptide Identification Algorithms

Colaert, Niklaas, Degroeve, Sven, Helsens, Kenny, Martens, Lennart

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 1.74 MB

english, 2011

15

Correction to Proteomic Identification of Protease Cleavage Sites Characterizes Prime and Non-prime Specificity of Cysteine Cathepsins B, L, and S

Biniossek, Martin L., Nägler, Dorit K., Becker-Pauly, Christoph, Schilling, Oliver

Journal:

Journal of Proteome Research

Year:

2011

File:

PDF, 607 KB

2011

16

Cycloquest: Identification of Cyclopeptides via Database Search of Their Mass Spectra against Genome Databases

Mohimani, Hosein, Liu, Wei-Ting, Mylne, Joshua S., Poth, Aaron G., Colgrave, Michelle L., Tran, Dat, Selsted, Michael E., Dorrestein, Pieter C., Pevzner, Pavel A.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 612 KB

english, 2011

17

D-SLIMMER: Domain–SLiM Interaction Motifs Miner for Sequence Based Protein–Protein Interaction Data

Hugo, Willy, Ng, See-Kiong, Sung, Wing-Kin

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 4.73 MB

english, 2011

18

Effects of Docosahexaenoic Acid on Mouse Brain Synaptic Plasma Membrane Proteome Analyzed by Mass Spectrometry and 16 O/ 18 O Labeling

Sidhu, Vishaldeep K., Huang, Bill X., Kim, Hee-Yong

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 3.82 MB

english, 2011

19

Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC) versus Strong Cation Exchange (SCX) for Fractionation of iTRAQ-Labeled Peptides

Hao, Piliang, Qian, Jingru, Ren, Yan, Sze, Siu Kwan

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 1.93 MB

english, 2011

20

Functional Implications of Structural Predictions for Alternative Splice Proteins Expressed in Her2/neu–Induced Breast Cancers

Menon, Rajasree, Roy, Ambrish, Mukherjee, Srayanta, Belkin, Saveliy, Zhang, Yang, Omenn, Gilbert S.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.38 MB

english, 2011

21

H Ferritin Gene Silencing in a Human Metastatic Melanoma Cell Line: A Proteomic Analysis

Di Sanzo, Maddalena, Gaspari, Marco, Misaggi, Roberta, Romeo, Francesco, Falbo, Lucia, De Marco, Carmela, Agosti, Valter, Quaresima, Barbara, Barni, Tullio, Viglietto, Giuseppe, Larsen, Martin Røssel,

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 3.74 MB

english, 2011

22

Label-free Quantitative Proteomics for the Extremely Thermophilic Bacterium Caldicellulosiruptor obsidiansis Reveal Distinct Abundance Patterns upon Growth on Cellobiose, Crystalline Cellulose, and Switchgrass

Lochner, Adriane, Giannone, Richard J., Keller, Martin, Antranikian, Garabed, Graham, David E., Hettich, Robert L.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 4.37 MB

english, 2011

23

Multidimensional Strategy for Sensitive Phosphoproteomics Incorporating Protein Prefractionation Combined with SIMAC, HILIC, and TiO 2 Chromatography Applied to Proximal EGF Signaling

Engholm-Keller, Kasper, Hansen, Thomas Aarup, Palmisano, Giuseppe, Larsen, Martin R.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.85 MB

english, 2011

24

Phosphoproteome Analysis of Streptomyces Development Reveals Extensive Protein Phosphorylation Accompanying Bacterial Differentiation

Manteca, Angel, Ye, Juanying, Sánchez, Jesús, Jensen, Ole Nørregaard

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 5.60 MB

english, 2011

25

Proteomic Analysis of Tumor Necrosis Factor-Alpha (TNF-α)-Induced L6 Myotube Secretome Reveals Novel TNF-α-Dependent Myokines in Diabetic Skeletal Muscle

Yoon, Jong Hyuk, Song, Parkyong, Jang, Jin-Hyeok, Kim, Dae-Kyum, Choi, Sunkyu, Kim, Jaeyoon, Ghim, Jaewang, Kim, Dayea, Park, Sehoon, Lee, Hyeongji, Kwak, Dongoh, Yea, Kyungmoo, Hwang, Daehee, Suh, Pa

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.82 MB

english, 2011

26

Proteomics under Pressure: Development of Essential Sample Preparation Techniques in Proteomics Using Ultrahigh Hydrostatic Pressure

Freeman, Emily, Ivanov, Alexander R.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 3.41 MB

english, 2011

27

The Thylakoid Membrane Proteome of Two Marine Diatoms Outlines Both Diatom-Specific and Species-Specific Features of the Photosynthetic Machinery

Grouneva, Irina, Rokka, Anne, Aro, Eva-Mari

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.75 MB

english, 2011

28

Unraveling the Human Bone Microenvironment beyond the Classical Extracellular Matrix Proteins: A Human Bone Protein Library

Alves, Rodrigo D. A. M., Demmers, Jeroen A. A., Bezstarosti, Karel, van der Eerden, Bram C. J., Verhaar, Jan A. N., Eijken, Marco, van Leeuwen, Johannes P. T. M.

Journal:

Journal of Proteome Research

Year:

2011

File:

PDF, 605 KB

2011

29

Universal and Confident Phosphorylation Site Localization Using phosphoRS

Taus, Thomas, Köcher, Thomas, Pichler, Peter, Paschke, Carmen, Schmidt, Andreas, Henrich, Christoph, Mechtler, Karl

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.65 MB

english, 2011

30

Varicella Zoster Virus ORF25 Gene Product: An Essential Hub Protein Linking Encapsidation Proteins and the Nuclear Egress Complex

Vizoso Pinto, Maria G., Pothineni, Venkata R., Haase, Rudolf, Woidy, Mathias, Lotz-Havla, Amelie S., Gersting, Søren W., Muntau, Ania C., Haas, Jürgen, Sommer, Marvin, Arvin, Ann M., Baiker, Armin

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.72 MB

english, 2011

31

Combined Transcriptomic– 1 H NMR Metabonomic Study Reveals That Monoethylhexyl Phthalate Stimulates Adipogenesis and Glyceroneogenesis in Human Adipocytes

Ellero-Simatos, Sandrine, Claus, Sandrine P., Benelli, Chantal, Forest, Claude, Letourneur, Franck, Cagnard, Nicolas, Beaune, Philippe H., de Waziers, Isabelle

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.11 MB

english, 2011

32

Comparison of Three Quantitative Phosphoproteomic Strategies to Study Receptor Tyrosine Kinase Signaling

Zhang, Guoan, Neubert, Thomas A.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 1.64 MB

english, 2011