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Volume 10; Issue 3
Main
Journal of Proteome Research
Volume 10; Issue 3
Journal of Proteome Research
Volume 10; Issue 3
1
Mapping the Protein Interaction Network in Methicillin-Resistant Staphylococcus aureus
Cherkasov, Artem
,
Hsing, Michael
,
Zoraghi, Roya
,
Foster, Leonard J.
,
See, Raymond H.
,
Stoynov, Nikolay
,
Jiang, Jihong
,
Kaur, Sukhbir
,
Lian, Tian
,
Jackson, Linda
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 4.41 MB
Your tags:
english, 2011
2
Proteomic Profiling of Human Plasma by iTRAQ Reveals Down-Regulation of ITI-HC3 and VDBP by Cigarette Smoking
Bortner, James D.
,
Richie, John P.
,
Das, Arunangshu
,
Liao, Jason
,
Umstead, Todd M.
,
Stanley, Anne
,
Stanley, Bruce A.
,
Belani, Chandra P.
,
El-Bayoumy, Karam
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 4.06 MB
Your tags:
english, 2011
3
Proteomic Characterization of Aggregating Proteins after the Inhibition of the Ubiquitin Proteasome System
Wilde, Inga B.
,
Brack, Maria
,
Winget, Jason M.
,
Mayor, Thibault
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 988 KB
Your tags:
english, 2011
4
Coomassie Staining as Loading Control in Western Blot Analysis
Welinder, Charlotte
,
Ekblad, Lars
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 713 KB
Your tags:
english, 2011
5
Xlink-Identifier: An Automated Data Analysis Platform for Confident Identifications of Chemically Cross-Linked Peptides Using Tandem Mass Spectrometry
Du, Xiuxia
,
Chowdhury, Saiful M.
,
Manes, Nathan P.
,
Wu, Si
,
Mayer, M. Uljana
,
Adkins, Joshua N.
,
Anderson, Gordon A.
,
Smith, Richard D.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 1.33 MB
Your tags:
english, 2011
6
Glycomic and Glycoproteomic Analysis of Serum from Patients with Stomach Cancer Reveals Potential Markers Arising from Host Defense Response Mechanisms
Bones, Jonathan
,
Byrne, Jennifer C.
,
O’Donoghue, Niaobh
,
McManus, Ciara
,
Scaife, Caitriona
,
Boissin, Herve
,
Nastase, Anca
,
Rudd, Pauline M.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 1.29 MB
Your tags:
english, 2011
7
Proteomic Characterization and Functional Analysis of Outer Membrane Vesicles of Francisella novicida Suggests Possible Role in Virulence and Use as a Vaccine
Pierson, Tony
,
Matrakas, Demetrios
,
Taylor, Yuka U.
,
Manyam, Ganiraju
,
Morozov, Victor N.
,
Zhou, Weidong
,
van Hoek, Monique L.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 4.56 MB
Your tags:
english, 2011
8
New Structural Proteins of Halobacterium salinarum Gas Vesicle Revealed by Comparative Proteomics Analysis
Chu, Lichieh Julie
,
Chen, Mengchieh Claire
,
Setter, Jocelyn
,
Tsai, Yihsuan Shannon
,
Yang, Hanyin
,
Fang, Xuefeng
,
Ting, Ying Sonia
,
Shaffer, Scott A.
,
Taylor, Gregory K.
,
von Haller, Priska D.
,
Goodlet
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 839 KB
Your tags:
english, 2011
9
Proteomic Analysis of Cellular Response to Novel Proapoptotic Agents Related to Atypical Retinoids in Human IGROV-1 Ovarian Carcinoma Cells
Milli, Alberto
,
Perego, Paola
,
Beretta, Giovanni L.
,
Corvo, Alice
,
Righetti, Pier Giorgio
,
Carenini, Nives
,
Corna, Elisabetta
,
Zuco, Valentina
,
Zunino, Franco
,
Cecconi, Daniela
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.56 MB
Your tags:
english, 2011
10
Quantitative Phosphoproteomics Studies Using Stable Isotope Dimethyl Labeling Coupled with IMAC-HILIC-nanoLC−MS/MS for Estrogen-Induced Transcriptional Regulation
Wu, Chin-Jen
,
Chen, Yen-Wen
,
Tai, Jung-Hsiang
,
Chen, Shu-Hui
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 4.08 MB
Your tags:
english, 2011
11
LC-MS based serum metabonomic analysis for renal cell carcinoma diagnosis, staging, and biomarker discovery
Lin, Lin
,
Huang, Zhenzhen
,
Gao, Yao
,
Yan, Xiaomei
,
Xing, Jinchun
,
Hang, Wei
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.15 MB
Your tags:
english, 2011
12
UNiquant, a Program for Quantitative Proteomics Analysis Using Stable Isotope Labeling
Huang, Xin
,
Tolmachev, Aleksey V.
,
Shen, Yulei
,
Liu, Miao
,
Huang, Lin
,
Zhang, Zhixin
,
Anderson, Gordon A.
,
Smith, Richard D.
,
Chan, Wing C.
,
Hinrichs, Steven H.
,
Fu, Kai
,
Ding, Shi-Jian
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 2.86 MB
Your tags:
english, 2011
13
Applying Random Forests To Identify Biomarker Panels in Serum 2D-DIGE Data for the Detection and Staging of Prostate Cancer
Fan, Yue
,
Murphy, Thomas Brendan
,
Byrne, Jennifer C.
,
Brennan, Lorraine
,
Fitzpatrick, John M.
,
Watson, R. William G.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 2.15 MB
Your tags:
english, 2011
14
Characterization of Metaproteomics in Crop Rhizospheric Soil
Wang, Hai-Bin
,
Zhang, Zhi-Xing
,
Li, Hui
,
He, Hai-Bin
,
Fang, Chang-Xun
,
Zhang, Ai-Jia
,
Li, Qi-Song
,
Chen, Rong-Shan
,
Guo, Xu-Kui
,
Lin, Hui-Feng
,
Wu, Lin-Kun
,
Lin, Sheng
,
Chen, Ting
,
Lin, Rui-Yu
,
Peng,
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.22 MB
Your tags:
english, 2011
15
Single-Molecule Detection on a Protein-Array Assay Platform for the Exposure of a Tuberculosis Antigen
Schmidt, Ronny
,
Jacak, Jaroslaw
,
Schirwitz, Christopher
,
Stadler, Volker
,
Michel, Gerd
,
Marmé, Nicole
,
Schütz, Gerhard J.
,
Hoheisel, Jörg D.
,
Knemeyer, Jens-Peter
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 878 KB
Your tags:
english, 2011
16
Proteomic Analysis of Seminal Plasma from Normal Volunteers and Post-Vasectomy Patients Identifies over 2000 Proteins and Candidate Biomarkers of the Urogenital System
Batruch, Ihor
,
Lecker, Irene
,
Kagedan, Daniel
,
Smith, Christopher R.
,
Mullen, Brendan J.
,
Grober, Ethan
,
Lo, Kirk C.
,
Diamandis, Eleftherios P.
,
Jarvi, Keith A.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 1.31 MB
Your tags:
english, 2011
17
Online Mass Spectrometric Analysis of Proteins/Peptides Following Electrolytic Cleavage of Disulfide Bonds
Zhang, Yun
,
Dewald, Howard D.
,
Chen, Hao
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.91 MB
Your tags:
english, 2011
18
Changes in Expression of Skeletal Muscle Proteins between Obesity-Prone and Obesity-Resistant Rats Induced by a High-Fat Diet
Kim, Dong Hyun
,
Choi, Jung-Won
,
Joo, Jeong In
,
Wang, Xia
,
Choi, Duk Kwon
,
Oh, Tae Seok
,
Yun, Jong Won
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 2.09 MB
Your tags:
english, 2011
19
Use of Proteomic Differential Displays to Assess Functional Discrepancies and Adjustments of Human Bone Marrow- and Wharton Jelly-Derived Mesenchymal Stem Cells
Kuo, Hsing-Chun
,
Chiu, Chi-Chin
,
Chang, Wan-Ching
,
Sheen, Jiunn-Ming
,
Ou, Chia-Yu
,
Kuo, Ho-Chang
,
Chen, Rong-Fu
,
Hsu, Te-Yao
,
Chang, Jen-Chieh
,
Hsaio, Chang-Chun
,
Wang, Feng-Sheng
,
Huang, Chung-Cheng
,
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 5.13 MB
Your tags:
english, 2011
20
A Bioinformatics Approach for Biomarker Identification in Radiation-Induced Lung Inflammation from Limited Proteomics Data
Oh, Jung Hun
,
Craft, Jeffrey M.
,
Townsend, Reid
,
Deasy, Joseph O.
,
Bradley, Jeffrey D.
,
El Naqa, Issam
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.86 MB
Your tags:
english, 2011
21
RockerBox: Analysis and Filtering of Massive Proteomics Search Results
van den Toorn, Henk W. P.
,
Muñoz, Javier
,
Mohammed, Shabaz
,
Raijmakers, Reinout
,
Heck, Albert J. R.
,
van Breukelen, Bas
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 1.56 MB
Your tags:
english, 2011
22
Altered Fatty Acid Metabolism in Long Duration Road Transport: An NMR-based Metabonomics Study in Sheep
Li, Juan
,
Wijffels, Gene
,
Yu, Yihua
,
Nielsen, Lars K.
,
Niemeyer, Dominic O.
,
Fisher, Andrew D.
,
Ferguson, Drewe M.
,
Schirra, Horst Joachim
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 4.79 MB
Your tags:
english, 2011
23
Tyramide Signal Amplification for Antibody-Overlay Lectin Microarray: A Strategy to Improve the Sensitivity of Targeted Glycan Profiling
Meany, Danni L.
,
Hackler, Laszlo
,
Zhang, Hui
,
Chan, Daniel W.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.70 MB
Your tags:
english, 2011
24
Lipid Metabolism and Peroxisome Proliferator-Activated Receptor Signaling Pathways Participate in Late-Phase Liver Regeneration
Yuan, Xing
,
Yan, Shikai
,
Zhao, Jing
,
Shi, Duo
,
Yuan, Bin
,
Dai, Weixing
,
Jiao, Binghua
,
Zhang, Weidong
,
Miao, Mingyong
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 4.80 MB
Your tags:
english, 2011
25
Comprehensive Proteomic Analysis of the Effects of Purine Analogs on Human Raji B-Cell Lymphoma
Mactier, Swetlana
,
Henrich, Silke
,
Che, Yiping
,
Kohnke, Philippa L.
,
Christopherson, Richard I.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.32 MB
Your tags:
english, 2011
26
Metabotyping of Caenorhabditis elegans and their Culture Media Revealed Unique Metabolic Phenotypes Associated to Amino Acid Deficiency and Insulin-Like Signaling
Martin, Francois-Pierre J.
,
Spanier, Britta
,
Collino, Sebastiano
,
Montoliu, Ivan
,
Kolmeder, Carolin
,
Giesbertz, Pieter
,
Affolter, Michael
,
Kussmann, Martin
,
Daniel, Hannelore
,
Kochhar, Sunil
,
Rezzi, S
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.96 MB
Your tags:
english, 2011
27
Quantitative Secretome Analysis Reveals that COL6A1 is a Metastasis-Associated Protein Using Stacking Gel-Aided Purification Combined with iTRAQ Labeling
Chiu, Kuo-Hsun
,
Chang, Ying-Hwa
,
Wu, Yu-Shun
,
Lee, Shu-Hui
,
Liao, Pao-Chi
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 6.20 MB
Your tags:
english, 2011
28
Brain Extracellular Fluid Protein Changes in Acute Stroke Patients
Dayon, Loïc
,
Turck, Natacha
,
García-Berrocoso, Teresa
,
Walter, Nadia
,
Burkhard, Pierre R.
,
Vilalta, Anna
,
Sahuquillo, Juan
,
Montaner, Joan
,
Sanchez, Jean-Charles
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 1.35 MB
Your tags:
english, 2011
29
Identification and Validation of SAA as a Potential Lung Cancer Biomarker and its Involvement in Metastatic Pathogenesis of Lung Cancer
Sung, Hye-Jin
,
Ahn, Jung-Mo
,
Yoon, Yeon-Hee
,
Rhim, Tai-Youn
,
Park, Choon-Sik
,
Park, Jae-Yong
,
Lee, Soo-Youn
,
Kim, Jong-Won
,
Cho, Je-Yoel
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 6.20 MB
Your tags:
english, 2011
30
Identification of CaMKII Phosphorylation Sites in Connexin43 by High-Resolution Mass Spectrometry
Huang, Richard Y−C.
,
Laing, James G.
,
Kanter, Evelyn M.
,
Berthoud, Viviana M.
,
Bao, Mingwei
,
Rohrs, Henry W.
,
Townsend, R. Reid
,
Yamada, Kathryn A.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 4.04 MB
Your tags:
english, 2011
31
Use of Titanium Dioxide To Find Phosphopeptide and Total Protein Changes During Epididymal Sperm Maturation
Baker, Mark A.
,
Smith, Nathan D.
,
Hetherington, Louise
,
Pelzing, Matthias
,
Condina, Mark R.
,
Aitken, R. John
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 4.72 MB
Your tags:
english, 2011
32
Differential Proteomic Analysis of Renal Cell Carcinoma Tissue Interstitial Fluid
Teng, Pang-ning
,
Hood, Brian L.
,
Sun, Mai
,
Dhir, Rajiv
,
Conrads, Thomas P.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 1.91 MB
Your tags:
english, 2011
33
Interaction of Selenoprotein W with 14-3-3 Proteins: A Computational Approach
Musiani, Francesco
,
Ciurli, Stefano
,
Dikiy, Alexander
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 7.63 MB
Your tags:
english, 2011
34
Analysis of Phosphotyrosine Signaling in Glioblastoma Identifies STAT5 as a Novel Downstream Target of ΔEGFR
Chumbalkar, Vaibhav
,
Latha, Khatri
,
Hwang, YeoHyeon
,
Maywald, Rebecca
,
Hawley, Lauren
,
Sawaya, Raymond
,
Diao, Lixia
,
Baggerly, Keith
,
Cavenee, Webster K.
,
Furnari, Frank B.
,
Bogler, Oliver
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.96 MB
Your tags:
english, 2011
35
A High-Throughput O -Glycopeptide Discovery Platform for Seromic Profiling
Blixt, Ola
,
Cló, Emiliano
,
Nudelman, Aaron S.
,
So̷rensen, Kasper Kildegaard
,
Clausen, Thomas
,
Wandall, Hans H.
,
Livingston, Philip O.
,
Clausen, Henrik
,
Jensen, Knud J.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 1.65 MB
Your tags:
english, 2011
36
Hexapeptide Libraries for Enhanced Protein PTM Identification and Relative Abundance Profiling in Whole Human Saliva
Bandhakavi, Sricharan
,
Van Riper, Susan K.
,
Tawfik, Pierre N.
,
Stone, Matthew D.
,
Haddad, Tufia
,
Rhodus, Nelson L.
,
Carlis, John V.
,
Griffin, Timothy J.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 2.31 MB
Your tags:
english, 2011
37
Survey of the Phosphorylation Status of the Schizosaccharomyces pombe Deubiquitinating Enzyme (DUB) Family
McLean, Janel R.
,
Kouranti, Ilektra
,
Gould, Kathleen L.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.51 MB
Your tags:
english, 2011
38
Secretome of Human Endothelial Cells under Shear Stress
Burghoff, Sandra
,
Schrader, Jürgen
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 2.10 MB
Your tags:
english, 2011
39
Proteome-wide Identification of WRN-Interacting Proteins in Untreated and Nuclease-Treated Samples
Lachapelle, Sophie
,
Gagné, Jean-Philippe
,
Garand, Chantal
,
Desbiens, Myriam
,
Coulombe, Yan
,
Bohr, Vilhelm A.
,
Hendzel, Michael J.
,
Masson, Jean-Yves
,
Poirier, Guy G.
,
Lebel, Michel
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.36 MB
Your tags:
english, 2011
40
A Reciprocal 15 N-Labeling Proteomic Analysis of Expanding Arabidopsis Leaves Subjected to Osmotic Stress Indicates Importance of Mitochondria in Preserving Plastid Functions
Skirycz, Aleksandra
,
Memmi, Samy
,
De Bodt, Stefanie
,
Maleux, Katrien
,
Obata, Toshihiro
,
Fernie, Alisdair R.
,
Devreese, Bart
,
Inzé, Dirk
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.73 MB
Your tags:
english, 2011
41
Novel Glycosylation Sites Localized in Campylobacter jejuni Flagellin FlaA by Liquid Chromatography Electron Capture Dissociation Tandem Mass Spectrometry
Zampronio, Cleidiane G.
,
Blackwell, Gemma
,
Penn, Charles W.
,
Cooper, Helen J.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 2.56 MB
Your tags:
english, 2011
42
Snake Venomics of African Spitting Cobras: Toxin Composition and Assessment of Congeneric Cross-Reactivity of the Pan-African EchiTAb-Plus-ICP Antivenom by Antivenomics and Neutralization Approaches
Petras, Daniel
,
Sanz, Libia
,
Segura, Álvaro
,
Herrera, María
,
Villalta, Mauren
,
Solano, Daniela
,
Vargas, Mariángela
,
León, Guillermo
,
Warrell, David A.
,
Theakston, R. David G.
,
Harrison, Robert A.
,
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.34 MB
Your tags:
english, 2011
43
Data Variance and Statistical Significance in 2D-Gel Electrophoresis and DIGE Experiments: Comparison of the Effects of Normalization Methods
Keeping, Andrew J.
,
Collins, Richard A.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.19 MB
Your tags:
english, 2011
44
The Problem with Peptide Presumption and Low Mascot Scoring
Cooper, Bret
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 2.15 MB
Your tags:
english, 2011
45
Analysis of Differential Proteomes of Induced Pluripotent Stem Cells by Protein-Based Reprogramming of Fibroblasts
Jin, Jonghwa
,
Kwon, Yoo-Wook
,
Paek, Jae Seung
,
Cho, Hyun-Jai
,
Yu, Jiyoung
,
Lee, Ji Yoon
,
Chu, In-Sun
,
Park, In-Hyun
,
Park, Young-Bae
,
Kim, Hyo-Soo
,
Kim, Youngsoo
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 5.11 MB
Your tags:
english, 2011
46
Differential Proteomic Analysis of Late-Stage and Recurrent Breast Cancer from Formalin-Fixed Paraffin-Embedded Tissues
Bateman, Nicholas W.
,
Sun, Mai
,
Bhargava, Rohit
,
Hood, Brian L.
,
Darfler, Marlene M.
,
Kovatich, Albert J.
,
Hooke, Jeffrey A.
,
Krizman, David B.
,
Conrads, Thomas P.
Journal:
Journal of Proteome Research
Year:
2011
Language:
english
File:
PDF, 3.42 MB
Your tags:
english, 2011
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