Volume 11; Issue 2

Journal of Proteome Research

Volume 11; Issue 2

1

Improving Collision Induced Dissociation (CID), High Energy Collision Dissociation (HCD), and Electron Transfer Dissociation (ETD) Fourier Transform MS/MS Degradome–Peptidome Identifications Using High Accuracy Mass Information

Shen, Yufeng, Tolić, Nikola, Purvine, Samuel O., Smith, Richard D.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 5.66 MB

english, 2012

2

Examining the Complexity of Human RNA Polymerase Complexes using HaloTag Technology Coupled to Label Free Quantitative Proteomics

Daniels, Danette L., Méndez, Jacqui, Mosley, Amber L., Ramisetty, Sreenivasa R., Murphy, Nancy, Benink, Hélène, Wood, Keith V., Urh, Marjeta, Washburn, Michael P.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 526 KB

english, 2012

3

Stability and Robustness of Human Metabolic Phenotypes in Response to Sequential Food Challenges

Lindon, John C., Holmes, Elaine, Nicholson, Jeremy K., Heinzmann, Silke S., Merrifield, Claire A., Rezzi, Serge, Kochhar, Sunil

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

4

Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins

Stafford, Thomas W., Holen, Steven R., Collins, Matthew J., Orlando, Ludovic, Willerslev, Eske, Cappellini, Enrico, Jensen, Lars J., Szklarczyk, Damian, Ginolhac, Aurélien, da Fonseca, Rute A. R.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.67 MB

english, 2012

5

Biomarkers of Breast Cancer Apoptosis Induced by Chemotherapy and TRAIL

Leong, Sharon, McKay, Matthew J., Christopherson, Richard I., Baxter, Robert C.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.79 MB

english, 2012

6

Urine Metabolic Signature of Pancreatic Ductal Adenocarcinoma by 1H Nuclear Magnetic Resonance: Identification, Mapping, and Evolution

Napoli, Claudia, Sperandio, Nicola, Lawlor, Rita T., Scarpa, Aldo, Molinari, Henriette, Assfalg, Michael

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.53 MB

english, 2012

7

Quantitative Proteomic Analysis of Membrane Proteins Involved in Astroglial Differentiation of Neural Stem Cells by SILAC Labeling Coupled with LC–MS/MS

Cao, Rui, Chen, Ke, Song, Qin, Zang, Yi, Li, Jia, Wang, Xianchun, Chen, Ping, Liang, Songping

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 484 KB

english, 2012

8

Analysis of Oxygen/Glucose-Deprivation-Induced Changes in SUMO3 Conjugation Using SILAC-Based Quantitative Proteomics

Yang, Wei, Thompson, J. Will, Wang, Zhengfeng, Wang, Liangli, Sheng, Huaxin, Foster, Matthew W., Moseley, M. Arthur, Paschen, Wulf

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.69 MB

english, 2012

9

Development of a Chip/Chip/SRM Platform Using Digital Chip Isoelectric Focusing and LC-Chip Mass Spectrometry for Enrichment and Quantitation of Low Abundance Protein Biomarkers in Human Plasma

Rafalko, Agnes, Dai, Shujia, Hancock, William S., Karger, Barry L., Hincapie, Marina

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 467 KB

english, 2012

10

Low Plasma Albumin Levels Are Associated with Increased Plasma Protein Glycation and HbA1c in Diabetes

Bhonsle, Hemangi S., Korwar, Arvind M., Kote, Sachin S., Golegaonkar, Sandeep B., Chougale, Ashok D., Shaik, Mahemud L., Dhande, Nitin L., Giri, Ashok P., Shelgikar, Kishore M., Boppana, Ramanamurthy

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 398 KB

english, 2012

11

Proteomic Approach Reveals FKBP4 and S100A9 as Potential Prediction Markers of Therapeutic Response to Neoadjuvant Chemotherapy in Patients with Breast Cancer

Yang, Won Suk, Moon, Hyeong-Gon, Kim, Hee Sung, Choi, Eui-Ju, Yu, Myeong-Hee, Noh, Dong-Young, Lee, Cheolju

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.56 MB

english, 2012

12

Gut Microbiota Modulate the Metabolism of Brown Adipose Tissue in Mice

Mestdagh, Renaud, Dumas, Marc-Emmanuel, Rezzi, Serge, Kochhar, Sunil, Holmes, Elaine, Claus, Sandrine P., Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

13

Dynamic Proteome Analysis of Cyanothece sp. ATCC 51142 under Constant Light

Aryal, Uma K., Stöckel, Jana, Welsh, Eric A., Gritsenko, Marina A., Nicora, Carrie D., Koppenaal, David W., Smith, Richard D., Pakrasi, Himadri B., Jacobs, Jon M.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.06 MB

english, 2012

14

Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data

Wang, Xiaojing, Slebos, Robbert J. C., Wang, Dong, Halvey, Patrick J., Tabb, David L., Liebler, Daniel C., Zhang, Bing

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.31 MB

english, 2012

15

Proteomic Analysis Reveals Warburg Effect and Anomalous Metabolism of Glutamine in Pancreatic Cancer Cells

Zhou, Weidong, Capello, Michela, Fredolini, Claudia, Racanicchi, Leda, Piemonti, Lorenzo, Liotta, Lance A., Novelli, Francesco, Petricoin, Emanuel F.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.65 MB

english, 2012

16

Proteomic Analysis of Major and Minor Allergens from Isolated Pollen Cytoplasmic Granules

Abou Chakra, Oussama R., Sutra, Jean-Pierre, Demey Thomas, Emmanuelle, Vinh, Joëlle, Lacroix, Ghislaine, Poncet, Pascal, Sénéchal, Hélène

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.23 MB

english, 2012

17

Differential Expressions of Nuclear Proteomes between Honeybee ( Apis mellifera L.) Queen and Worker Larvae: A Deep Insight into Caste Pathway Decisions

Begna, Desalegn, Han, Bin, Feng, Mao, Fang, Yu, Li, Jianke

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.83 MB

english, 2012

18

Pilot Application of iTRAQ to the Retinal Disease Macular Telangiectasia

Len, Alice C. L., Powner, Michael B., Zhu, Ling, Hageman, Gregory S., Song, Xiaomin, Fruttiger, Marcus, Gillies, Mark C.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.08 MB

english, 2012

19

Proteomic Analysis of Sulfolobus solfataricus during Sulfolobus Turreted Icosahedral Virus Infection

Maaty, Walid S., Selvig, Kyla, Ryder, Stephanie, Tarlykov, Pavel, Hilmer, Jonathan K., Heinemann, Joshua, Steffens, Joseph, Snyder, Jamie C., Ortmann, Alice C., Movahed, Navid, Spicka, Kevin, Chetia,

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.39 MB

english, 2012

20

NMR Metabolomic Analysis of Dairy Cows Reveals Milk Glycerophosphocholine to Phosphocholine Ratio as Prognostic Biomarker for Risk of Ketosis

Klein, Matthias S., Buttchereit, Nina, Miemczyk, Sebastian P., Immervoll, Ann-Kathrin, Louis, Caridad, Wiedemann, Steffi, Junge, Wolfgang, Thaller, Georg, Oefner, Peter J., Gronwald, Wolfram

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.46 MB

english, 2012

21

Metabonomic Profiles Discriminate Hepatocellular Carcinoma from Liver Cirrhosis by Ultraperformance Liquid Chromatography–Mass Spectrometry

Wang, Baohong, Chen, Deying, Chen, Yu, Hu, Zhenhua, Cao, Min, Xie, Qing, Chen, Yanfei, Xu, Jiali, Zheng, Shusen, Li, Lanjuan

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.54 MB

english, 2012

22

A Xenograft Mouse Model Coupled with In-depth Plasma Proteome Analysis Facilitates Identification of Novel Serum Biomarkers for Human Ovarian Cancer

Tang, Hsin-Yao, Beer, Lynn A., Chang-Wong, Tony, Hammond, Rachel, Gimotty, Phyllis, Coukos, George, Speicher, David W.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.81 MB

english, 2012

23

Analysis of Natural Variation of the Potato Tuber Proteome Reveals Novel Candidate Genes for Tuber Bruising

Urbany, Claude, Colby, Thomas, Stich, Benjamin, Schmidt, Lysann, Schmidt, Jürgen, Gebhardt, Christiane

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.29 MB

english, 2012

24

Naturally Occurring Structural Isomers in Serum IgA1 O -Glycosylation

Takahashi, Kazuo, Smith, Archer D., Poulsen, Knud, Kilian, Mogens, Julian, Bruce A., Mestecky, Jiri, Novak, Jan, Renfrow, Matthew B.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

25

Proteome-wide Identification of Ubiquitylation Sites by Conjugation of Engineered Lysine-less Ubiquitin

Oshikawa, Kiyotaka, Matsumoto, Masaki, Oyamada, Koji, Nakayama, Keiichi I.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.47 MB

english, 2012

26

Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons

Stella, Roberto, Cifani, Paolo, Peggion, Caterina, Hansson, Karin, Lazzari, Cristian, Bendz, Maria, Levander, Fredrik, Sorgato, Maria Catia, Bertoli, Alessandro, James, Peter

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.84 MB

english, 2012

27

Sputum Proteomics Identifies Elevated PIGR levels in Smokers and Mild-to-Moderate COPD

Ohlmeier, Steffen, Mazur, Witold, Linja-aho, Anna, Louhelainen, Noora, Rönty, Mikko, Toljamo, Tuula, Bergmann, Ulrich, Kinnula, Vuokko L.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.87 MB

english, 2012

28

Glycoprotein Profiles of Human Breast Cells Demonstrate a Clear Clustering of Normal/Benign versus Malignant Cell Lines and Basal versus Luminal Cell Lines

Yen, Ten-Yang, Macher, Bruce A., McDonald, Claudia A., Alleyne-Chin, Chris, Timpe, Leslie C.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.81 MB

english, 2012

29

Proteomic Analysis of Microvesicles Derived from Human Mesenchymal Stem Cells

Kim, Han-Soo, Choi, Do-Young, Yun, So Jeong, Choi, Seong-Mi, Kang, Jeong Won, Jung, Jin Woo, Hwang, Daehee, Kim, Kwang Pyo, Kim, Dong-Wook

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.77 MB

english, 2012

30

Improved Two-Dimensional Reversed Phase-Reversed Phase LC-MS/MS Approach for Identification of Peptide-Protein Interactions

Stephanowitz, Heike, Lange, Sabine, Lang, Diana, Freund, Christian, Krause, Eberhard

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.67 MB

english, 2012

31

Integration of Metabolomics and Expression of Glycerol-3-phosphate Acyltransferase (GPAM) in Breast Cancer—Link to Patient Survival, Hormone Receptor Status, and Metabolic Profiling

Brockmöller, Scarlet F., Bucher, Elmar, Müller, Berit M., Budczies, Jan, Hilvo, Mika, Griffin, Julian L., Orešič, Matej, Kallioniemi, Olli, Iljin, Kristiina, Loibl, Sibylle, Darb-Esfahani, Silvia, Sin

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.60 MB

english, 2012

32

Venomics Profiling of Thamnodynastes strigatus Unveils Matrix Metalloproteinases and Other Novel Proteins Recruited to the Toxin Arsenal of Rear-Fanged Snakes

Ching, Ana T. C., Paes Leme, Adriana F., Zelanis, André, Rocha, Marisa M. T., Furtado, Maria de Fátima D., Silva, Débora Andrade, Trugilho, Monique R. O., da Rocha, Surza L. G., Perales, Jonas, Ho, Pa

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.56 MB

english, 2012

33

Comparative Glycoproteome Analysis: Dynamics of Protein Glycosylation during Metamorphic Transition from Pelagic to Benthic Life Stages in Three Invertebrates

Chandramouli, Kondethimmanahalli H., Zhang, Yu, Wong, Yue Him, Qian, Pei-Yuan

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.20 MB

english, 2012

34

Metabolomics Study on the Toxicity of Aconite Root and Its Processed Products Using Ultraperformance Liquid-Chromatography/Electrospray-Ionization Synapt High-Definition Mass Spectrometry Coupled with Pattern Recognition Approach and Ingenuity Pathways Analysis

Wang, Xijun, Wang, Huiyu, Zhang, Aihua, Lu, Xin, Sun, Hui, Dong, Hui, Wang, Ping

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 9.05 MB

english, 2012

35

Integrated SDS Removal and Peptide Separation by Strong-Cation Exchange Liquid Chromatography for SDS-Assisted Shotgun Proteome Analysis

Sun, Difei, Wang, Nan, Li, Liang

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.68 MB

english, 2012

36

Global Effects of Adriamycin Treatment on Mouse Splenic Protein Levels

Evans, Adam R., Miriyala, Sumitra, St. Clair, Daret K., Butterfield, D. Allan, Robinson, Renã A. S.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.71 MB

english, 2012

37

Quantitative Proteomics Using Stable Isotope Labeling with Amino Acids in Cell Culture Reveals Protein and Pathway Regulation in Porcine Circovirus Type 2 Infected PK-15 Cells

Fan, Huiying, Ye, Yu, Luo, Yongwen, Tong, Tiezhu, Yan, Guangrong, Liao, Ming

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.16 MB

english, 2012

38

In Vivo Application of Photocleavable Protein Interaction Reporter Technology

Yang, Li, Zheng, Chunxiang, Weisbrod, Chad R., Tang, Xiaoting, Munske, Gerhard R., Hoopmann, Michael R., Eng, Jimmy K., Bruce, James E.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 5.88 MB

english, 2012

39

Distinct Urinary Metabolic Profile of Human Colorectal Cancer

Cheng, Yu, Xie, Guoxiang, Chen, Tianlu, Qiu, Yunping, Zou, Xia, Zheng, Minhua, Tan, Binbin, Feng, Bo, Dong, Taotao, He, Pingang, Zhao, Linjing, Zhao, Aihua, Xu, Lisa X., Zhang, Yan, Jia, Wei

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.80 MB

english, 2012

40

Differential Protein Pathways in 1,25-Dihydroxyvitamin D 3 and Dexamethasone Modulated Tolerogenic Human Dendritic Cells

Ferreira, Gabriela Bomfim, Kleijwegt, Fleur S., Waelkens, Etienne, Lage, Kasper, Nikolic, Tatjana, Hansen, Daniel Aaen, Workman, Christopher T., Roep, Bart O., Overbergh, Lut, Mathieu, Chantal

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 5.96 MB

english, 2012

41

The Protein Interaction Network of Extracellular Vesicles Derived from Human Colorectal Cancer Cells

Choi, Dong-Sic, Yang, Jae-Seong, Choi, Eun-Jeong, Jang, Su Chul, Park, Solip, Kim, Oh Youn, Hwang, Daehee, Kim, Kwang Pyo, Kim, Yoon-Keun, Kim, Sanguk, Gho, Yong Song

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.52 MB

english, 2012

42

Snake Venomics of Crotalus tigris : The Minimalist Toxin Arsenal of the Deadliest Neartic Rattlesnake Venom. Evolutionary Clues for Generating a Pan-Specific Antivenom against Crotalid Type II Venoms

Calvete, Juan J., Pérez, Alicia, Lomonte, Bruno, Sánchez, Elda E., Sanz, Libia

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.15 MB

english, 2012

43

Combined Electron Transfer Dissociation–Collision-Induced Dissociation Fragmentation in the Mass Spectrometric Distinction of Leucine, Isoleucine, and Hydroxyproline Residues in Peptide Natural Products

Gupta, Kallol, Kumar, Mukesh, Chandrashekara, Krishnappa, Krishnan, Kozhalmannom S., Balaram, Padmanabhan

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 617 KB

english, 2012

44

Characterization of the Lipid Droplet Proteome of a Clonal Insulin-producing β-Cell Line (INS-1 832/13)

Larsson, Sara, Resjö, Svante, Gomez, Maria F., James, Peter, Holm, Cecilia

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 298 KB

english, 2012

45

The Clavibacter michiganensis subsp. michiganensis –Tomato Interactome Reveals the Perception of Pathogen by the Host and Suggests Mechanisms of Infection

Savidor, Alon, Teper, Doron, Gartemann, Karl-Heinz, Eichenlaub, Rudolf, Chalupowicz, Laura, Manulis-Sasson, Shulamit, Barash, Isaac, Tews, Helena, Mayer, Kerstin, Giannone, Richard J., Hettich, Robert

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.17 MB

english, 2012

46

Proteomic Consequences of a Single Gene Mutation in a Colorectal Cancer Model

Halvey, Patrick J., Zhang, Bing, Coffey, Robert J., Liebler, Daniel C., Slebos, Robbert J. C.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.52 MB

english, 2012

47

Human ABCC1 Interacts and Colocalizes with ATP Synthase α, Revealed by Interactive Proteomics Analysis

Yang, Youyun, Li, Zhaomin, Mo, Wei, Ambadipudi, Raghuram, Arnold, Randy J., Hrncirova, Petra, Novotny, Milos V., Georges, Elias, Zhang, Jian-Ting

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.81 MB

english, 2012

48

Phosphoproteomic Analysis of Human Mesenchymal Stromal Cells during Osteogenic Differentiation

Lo, Ting, Tsai, Chia-Feng, Shih, Yu-Ru V., Wang, Yi-Ting, Lu, Sheng-Chieh, Sung, Ting-Yi, Hsu, Wen-Lian, Chen, Yu-Ju, Lee, Oscar K.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.01 MB

english, 2012

49

Delineating Diseases by IMS-MS Profiling of Serum N-linked Glycans

Isailovic, Dragan, Plasencia, Manolo D., Gaye, Maissa M., Stokes, Sarah T., Kurulugama, Ruwan. T., Pungpapong, Vitara, Zhang, Min, Kyselova, Zuzana, Goldman, Radoslav, Mechref, Yehia, Novotny, Milos V

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.37 MB

english, 2012

50

Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles)

Kinsinger, Christopher R., Apffel, James, Baker, Mark, Bian, Xiaopeng, Borchers, Christoph H., Bradshaw, Ralph, Brusniak, Mi-Youn, Chan, Daniel W., Deutsch, Eric W., Domon, Bruno, Gorman, Jeff, Grimm,

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 779 KB

english, 2012

51

Human Proteome-scale Structural Modeling of E2–E3 Interactions Exploiting Interface Motifs

Kar, Gozde, Keskin, Ozlem, Nussinov, Ruth, Gursoy, Attila

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.82 MB

english, 2012

52

Triple SILAC to Determine Stimulus Specific Interactions in the Wnt Pathway

Hilger, Maximiliane, Mann, Matthias

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.70 MB

english, 2012

53

15 N-Labeled Brain Enables Quantification of Proteome and Phosphoproteome in Cultured Primary Neurons

Liao, Lujian, Sando, Richard C., Farnum, John B., Vanderklish, Peter W., Maximov, Anton, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 5.02 MB

english, 2012

54

Age-Related Topographical Metabolic Signatures for the Rat Gastrointestinal Contents

Tian, Yuan, Zhang, Limin, Wang, Yulan, Tang, Huiru

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.57 MB

english, 2012

55

Liver Protein Profiling in Chronic Hepatitis C: Identification of Potential Predictive Markers for Interferon Therapy Outcome

Perdomo, Ariel Basulto, Ciccosanti, Fabiola, Iacono, Oreste Lo, Angeletti, Claudio, Corazzari, Marco, Daniele, Nicola, Testa, Angela, Pisa, Roberto, Ippolito, Giuseppe, Antonucci, Giorgio, Fimia, Gian

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.22 MB

english, 2012

56

Nanodiscs and SILAC-Based Mass Spectrometry to Identify a Membrane Protein Interactome

Zhang, Xiao X., Chan, Catherine S., Bao, Huan, Fang, Yuan, Foster, Leonard J., Duong, Franck

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.53 MB

english, 2012

57

Phosphoproteome Exploration Reveals a Reformatting of Cellular Processes in Response to Low Sterol Biosynthetic Capacity in Arabidopsis

Heintz, Dimitri, Gallien, Sebastien, Compagnon, Vincent, Berna, Anne, Suzuki, Masashi, Yoshida, Shigeo, Muranaka, Toshiya, Van Dorsselaer, Alain, Schaeffer, Christine, Bach, Thomas J., Schaller, Huber

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.87 MB

english, 2012

58

Dynamic Modulation of the Kv2.1 Channel by Src-Dependent Tyrosine Phosphorylation

Song, Min-Young, Hong, Chansik, Bae, Seong Han, So, Insuk, Park, Kang-Sik

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.08 MB

english, 2012

59

Proteomic Analysis of Colon Tissue from Interleukin-10 Gene-Deficient Mice Fed Polyunsaturated Fatty Acids with Comparison to Transcriptomic Analysis

Cooney, Janine M., Barnett, Matthew P. G., Brewster, Diane, Knoch, Bianca, McNabb, Warren C., Laing, William A., Roy, Nicole C.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 9.07 MB

english, 2012

60

Differential Glycomics of Epithelial Membrane Glycoproteins from Urinary Exovesicles Reveals Shifts toward Complex-Type N-Glycosylation in Classical Galactosemia

Staubach, Simon, Schadewaldt, Peter, Wendel, Udo, Nohroudi, Klaus, Hanisch, Franz-Georg

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.35 MB

english, 2012

61

Proteomic Comparison of Two Invasive Polychaete Species and Their Naturally Occurring F 1 -hybrids

Blank, Miriam, Mikkat, Stefan, Verleih, Marieke, Bastrop, Ralf

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.84 MB

english, 2012

62

Protein Composition of Immunoprecipitated Synaptic Ribbons

Kantardzhieva, A., Peppi, M., Lane, W. S., Sewell, W. F.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012

63

Potential New Method of Mixture Effects Testing Using Metabolomics and Caenorhabditis elegans

Jones, Oliver A. H., Swain, Suresh, C., Svendsen, Claus, Griffin, Julian L., Sturzenbaum, Stephen R., Spurgeon, David J.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 852 KB

english, 2012

64

Metal Affinity Enrichment Increases the Range and Depth of Proteome Identification for Extracellular Microbial Proteins

Wheeler, Korin E., Erickson, Brian K., Mueller, Ryan, Singer, Steven W., VerBerkmoes, Nathan C., Hwang, Mona, Thelen, Michael P., Hettich, Robert L.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.38 MB

english, 2012

65

Extensive Characterization of Tupaia belangeri Neuropeptidome Using an Integrated Mass Spectrometric Approach

Petruzziello, Filomena, Fouillen, Laetitia, Wadensten, Henrik, Kretz, Robert, Andren, Per E., Rainer, Gregor, Zhang, Xiaozhe

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.63 MB

english, 2012

66

Proteomic Analysis of Colorectal Cancer Metastasis: Stathmin-1 Revealed as a Player in Cancer Cell Migration and Prognostic Marker

Tan, Hwee Tong, Wu, Wei, Ng, Yi Zhen, Zhang, Xuxiao, Yan, Benedict, Ong, Chee Wee, Tan, Sandra, Salto-Tellez, Manuel, Hooi, Shing Chuan, Chung, Maxey C. M.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 7.09 MB

english, 2012

67

Integrated Proteomic and Metabolomic Analysis of Larval Brain Associated with Diapause Induction and Preparation in the Cotton Bollworm, Helicoverpa armigera

Zhang, Qi, Lu, Yu-Xuan, Xu, Wei-Hua

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.01 MB

english, 2012

68

Analysis of Transcriptional Factors and Regulation Networks in Laryngeal Squamous Cell Carcinoma Patients with Lymph Node Metastasis

Cai, Geng-Ming, Huang, Dong-Hai, Dai, Yao-Zhang, Liu, Yong, Pi, Lei-Ming, Tan, Hao-Lei, Liu, Li-Jun, Lv, Yun-Xia, Yu, Chang-Yun, Tan, Ping-Qing, Tian, Yong-Quan, Chen, Georgia Z., Zhang, Xin

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 5.11 MB

english, 2012

69

Quantitative Proteomics Reveal up-regulated Protein Expression of the SET Complex Associated with Hepatocellular Carcinoma

Li, Chen, Ruan, Hong-Qiang, Liu, Yan-Sheng, Xu, Meng-Jie, Dai, Jie, Sheng, Quan-Hu, Tan, Ye-Xiong, Yao, Zhen-Zhen, Wang, Hong-Yang, Wu, Jia-Rui, Zeng, Rong

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.56 MB

english, 2012

70

Metabolic Transformation of DMBA-Induced Carcinogenesis and Inhibitory Effect of Salvianolic Acid B and Breviscapine Treatment

Wei, Jie, Xie, Guoxiang, Ge, Shuyun, Qiu, Yunping, Liu, Wei, Lu, Aiping, Chen, Tianlu, Li, Houkai, Zhou, Zengtong, Jia, Wei

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.56 MB

english, 2012

71

Proteomics of Pseudomonas aeruginosa Australian Epidemic Strain 1 (AES-1) Cultured under Conditions Mimicking the Cystic Fibrosis Lung Reveals Increased Iron Acquisition via the Siderophore Pyochelin

Hare, Nathan J., Soe, Cho Zin, Rose, Barbara, Harbour, Colin, Codd, Rachel, Manos, Jim, Cordwell, Stuart J.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 9.99 MB

english, 2012

72

Changes in the Striatal Proteome of YAC128Q Mice Exhibit Gene–Environment Interactions between Mutant Huntingtin and Manganese

Wegrzynowicz, Michal, Holt, Hunter K, Friedman, David B, Bowman, Aaron B

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.52 MB

english, 2012

73

Proteomic and Biochemical Evidence Support a Role for Transport Vesicles and Endosomes in Stress Response and Secondary Metabolism in Aspergillus parasiticus

Linz, John E., Chanda, Anindya, Hong, Sung-Yong, Whitten, Douglas A., Wilkerson, Curtis, Roze, Ludmila V.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.29 MB

english, 2012

74

Proteome of the Early Embryo–Maternal Dialogue in the Cattle Uterus

Muñoz, Marta, Corrales, Fernando J., Caamaño, José N., Díez, Carmen, Trigal, Beatriz, Mora, María I., Martín, David, Carrocera, Susana, Gómez, Enrique

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.40 MB

english, 2012

75

Profiling of Antibody Production against Xenograft-released Proteins by Protein Microarrays Discovers Prostate Cancer Markers

Jansen, Flip H., van Rijswijk, Angelique, Teubel, Wilma, van Weerden, Wytske M., Reneman, Suzanne, van den Bemd, Gert-Jan, Roobol, Monique J., Bangma, Chris H., Staal, Frank J. T., Jenster, Guido

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

76

Environmental Contaminant Mixtures at Ambient Concentrations Invoke a Metabolic Stress Response in Goldfish Not Predicted from Exposure to Individual Compounds Alone

Jordan, Julia, Zare, Ava, Jackson, Leland J., Habibi, Hamid R., Weljie, Aalim M.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.50 MB

english, 2012

77

Improvement of Phosphoproteome Analyses Using FAIMS and Decision Tree Fragmentation. Application to the Insulin Signaling Pathway in Drosophila melanogaster S2 Cells

Bridon, Gaëlle, Bonneil, Eric, Muratore-Schroeder, Tara, Caron-Lizotte, Olivier, Thibault, Pierre

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.25 MB

english, 2012

78

Mass Spectrometric Characterization of Human N -Acylethanolamine-hydrolyzing Acid Amidase

West, Jay M., Zvonok, Nikolai, Whitten, Kyle M., Wood, JodiAnne T., Makriyannis, Alexandros

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.88 MB

english, 2012

79

Loss of Correlations among Proteins in Brains of the Ts65Dn Mouse Model of Down Syndrome

Ahmed, Md. Mahiuddin, Sturgeon, Xiaolu, Ellison, Misoo, Davisson, Muriel T., Gardiner, Katheleen J.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.42 MB

english, 2012

80

Relative Quantitation of Proteins in Expressed Prostatic Secretion with a Stable Isotope Labeled Secretome Standard

Zhao, Ting, Zeng, Xuemei, Bateman, Nicholas W., Sun, Mai, Teng, Pang-ning, Bigbee, William L., Dhir, Rajiv, Nelson, Joel B., Conrads, Thomas P., Hood, Brian L.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.48 MB

english, 2012

81

Untargeted Metabolome Quantitative Trait Locus Mapping Associates Variation in Urine Glycerate to Mutant Glycerate Kinase

Cazier, Jean-Baptise, Kaisaki, Pamela J., Argoud, Karène, Blaise, Benjamin J., Veselkov, Kirill, Ebbels, Timothy M. D., Tsang, Tsz, Wang, Yulan, Bihoreau, Marie-Thérèse, Mitchell, Steve C., Holmes, El

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.22 MB

english, 2012

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