Volume 11; Issue 7

Journal of Proteome Research

Volume 11; Issue 7

1

TOPPAS: A Graphical Workflow Editor for the Analysis of High-Throughput Proteomics Data

Junker, Johannes, Bielow, Chris, Bertsch, Andreas, Sturm, Marc, Reinert, Knut, Kohlbacher, Oliver

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.07 MB

english, 2012

2

iTRAQ-Based Proteomic Profiling of Breast Cancer Cell Response to Doxorubicin and TRAIL

Leong, Sharon, Nunez, Andrea C., Lin, Mike Z., Crossett, Ben, Christopherson, Richard I., Baxter, Robert C.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.66 MB

english, 2012

3

Tempest: GPU-CPU Computing for High-Throughput Database Spectral Matching

Milloy, Jeffrey A., Faherty, Brendan K., Gerber, Scott A.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.67 MB

english, 2012

4

Tissue Proteomics by One-Dimensional Gel Electrophoresis Combined with Label-Free Protein Quantification

Vasilj, Andrej, Gentzel, Marc, Ueberham, Elke, Gebhardt, Rolf, Shevchenko, Andrej

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 879 KB

english, 2012

5

Identification and Validation of Inhibitor-Responsive Kinase Substrates Using a New Paradigm To Measure Kinase-Specific Protein Phosphorylation Index

Li, Xiang, Rao, Varsha, Jin, Jin, Guan, Bin, Anderes, Kenna L., Bieberich, Charles J.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.06 MB

english, 2012

6

Targeting the Human Genome–Microbiome Axis for Drug Discovery: Inspirations from Global Systems Biology and Traditional Chinese Medicine

Zhao, Liping, Nicholson, Jeremy K., Lu, Aiping, Wang, Zhengtao, Tang, Huiru, Holmes, Elaine, Shen, Jian, Zhang, Xu, Li, Jia V., Lindon, John C.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.13 MB

english, 2012

7

Temporal Changes in Milk Proteomes Reveal Developing Milk Functions

Gao, Xinliu, McMahon, Robert J., Woo, Jessica G., Davidson, Barbara S., Morrow, Ardythe L., Zhang, Qiang

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 481 KB

english, 2012

8

A Proteomic Approach To Investigate the Distribution and Abundance of Surface and Internal Fasciola hepatica Proteins during the Chronic Stage of Natural Liver Fluke Infection in Cattle

Haçarız, Orçun, Sayers, Gearóid, Baykal, Ahmet Tarık

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

9

Gold Nanoparticle-Based Immuno Dual Probes for Targeting Proteomics

Chen, Chan-Hua, Hong, Jing-Xiang, Wu, Chun-Sheng, Chen, Shu-Hui

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.45 MB

english, 2012

10

Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification

Teleman, Johan, Karlsson, Christofer, Waldemarson, Sofia, Hansson, Karin, James, Peter, Malmström, Johan, Levander, Fredrik

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.77 MB

english, 2012

11

Smoke-Induced Signal Molecules in Bone Marrow Cells from Altered Low-Density Lipoprotein Receptor-Related Protein 5 Mice

Ma, Danjun, Li, Yan, Hackfort, Bryan, Zhao, Yingchun, Xiao, Jing, Swanson, Patrick C., Lappe, Joan, Xiao, Peng, Cullen, Diane, Akhter, Mohammed, Recker, Robert, Xiao, Gary Guishan

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.16 MB

english, 2012

12

Comparative Proteomic Analysis of the Thermotolerant Plant Portulaca oleracea Acclimation to Combined High Temperature and Humidity Stress

Yang, Yunqiang, Chen, Jinhui, Liu, Qi, Ben, Cécile, Todd, Christopher D., Shi, Jisen, Yang, Yongping, Hu, Xiangyang

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.76 MB

english, 2012

13

Metabonomic Analysis Reveals the CCl 4 -Induced Systems Alterations for Multiple Rat Organs

Jiang, Limiao, Huang, Jing, Wang, Yulan, Tang, Huiru

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.98 MB

english, 2012

14

Components of Mitochondrial Oxidative Phosphorylation Vary in Abundance Following Exposure to Cold and Chemical Stresses

Tan, Yew-Foon, Millar, A. Harvey, Taylor, Nicolas L.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.07 MB

english, 2012

15

Free Glucosylglycerate Is a Novel Marker of Nitrogen Stress in Mycobacterium smegmatis

Behrends, Volker, Williams, Kerstin J., Jenkins, Victoria A., Robertson, Brian D., Bundy, Jacob G.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.44 MB

english, 2012

16

GeLC-MRM Quantitation of Mutant KRAS Oncoprotein in Complex Biological Samples

Halvey, Patrick J., Ferrone, Cristina R., Liebler, Daniel C.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1021 KB

english, 2012

17

Antipsychotic Treatment of Acute Paranoid Schizophrenia Patients with Olanzapine Results in Altered Glycosylation of Serum Glycoproteins

Telford, Jayne E., Bones, Jonathan, McManus, Ciara, Saldova, Radka, Manning, Gwen, Doherty, Margaret, Leweke, F. Markus, Rothermundt, Matthias, Guest, Paul C., Rahmoune, Hassan, Bahn, Sabine, Rudd, Pa

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.17 MB

english, 2012

18

Prediction of Neuroprotective Treatment Efficiency Using a HRMAS NMR-Based Statistical Model of Refractory Status Epilepticus on Mouse: A Metabolomic Approach Supported by Histology

Fauvelle, Florence, Carpentier, Pierre, Dorandeu, Frederic, Foquin, Annie, Testylier, Guy

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.78 MB

english, 2012

19

Introducing AAA-MS, a Rapid and Sensitive Method for Amino Acid Analysis Using Isotope Dilution and High-Resolution Mass Spectrometry

Louwagie, Mathilde, Kieffer-Jaquinod, Sylvie, Dupierris, Véronique, Couté, Yohann, Bruley, Christophe, Garin, Jérôme, Dupuis, Alain, Jaquinod, Michel, Brun, Virginie

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 964 KB

english, 2012

20

Molecular Validation of the Acute Phencyclidine Rat Model for Schizophrenia: Identification of Translational Changes in Energy Metabolism and Neurotransmission

Ernst, Agnes, Ma, Dan, Garcia-Perez, Isabel, Tsang, Tsz M., Kluge, Wolfgang, Schwarz, Emanuel, Guest, Paul C., Holmes, Elaine, Sarnyai, Zoltan, Bahn, Sabine

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.55 MB

english, 2012

21

Methyl Jasmonate Responsive Proteins in Brassica napus Guard Cells Revealed by iTRAQ-Based Quantitative Proteomics

Zhu, Mengmeng, Dai, Shaojun, Zhu, Ning, Booy, Aaron, Simons, Brigitte, Yi, Sarah, Chen, Sixue

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.71 MB

english, 2012

22

Proteomic Analysis of Bronchoalveolar Lavage Fluid Proteins from Mice Infected with Francisella tularensis ssp. novicida

Varnum, Susan M., Webb-Robertson, Bobbie-Jo M., Pounds, Joel G., Moore, Ronald J., Smith, Richard D., Frevert, Charles W., Skerrett, Shawn J., Wunschel, David

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.86 MB

english, 2012

23

New Insights into Fish Swimming: A Proteomic and Isotopic Approach in Gilthead Sea Bream

Martin-Perez, Miguel, Fernandez-Borras, Jaume, Ibarz, Antoni, Millan-Cubillo, Antonio, Felip, Olga, de Oliveira, Eliandre, Blasco, Josefina

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.51 MB

english, 2012

24

Impact of the Core Components of the Phosphoenolpyruvate-Carbohydrate Phosphotransferase System, HPr and EI, on Differential Protein Expression in Ralstonia eutropha H16

Kaddor, Chlud, Voigt, Birgit, Hecker, Michael, Steinbüchel, Alexander

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.51 MB

english, 2012

25

Delicate Analysis of Post-Translational Modifications on Dishevelled 3

Wu, Chaochao, Wei, Wei, Li, Chen, Li, Qingrun, Sheng, Quanhu, Zeng, Rong

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.83 MB

english, 2012

26

Discovery of Novel Glucose-Regulated Proteins in Isolated Human Pancreatic Islets Using LC–MS/MS-Based Proteomics

Schrimpe-Rutledge, Alexandra C., Fontès, Ghislaine, Gritsenko, Marina A., Norbeck, Angela D., Anderson, David J., Waters, Katrina M., Adkins, Joshua N., Smith, Richard D., Poitout, Vincent, Metz, Thom

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.77 MB

english, 2012

27

Development of a Multiplex Selected Reaction Monitoring Assay for Quantification of Biochemical Markers of Down Syndrome in Amniotic Fluid Samples

Martínez-Morillo, Eduardo, Cho, Chan-Kyung J., Drabovich, Andrei P., Shaw, Julie L.V., Soosaipillai, Antoninus, Diamandis, Eleftherios P.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.47 MB

english, 2012

28

Urinary Metabolite Variation Is Associated with Pathological Progression of the Post-Hepatitis B Cirrhosis Patients

Wang, Xiaoning, Wang, Xiaoyan, Xie, Guoxiang, Zhou, Mingmei, Yu, Huan, Lin, Yan, Du, Guangli, Luo, Guoan, Jia, Wei, Liu, Ping

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.48 MB

english, 2012

29

Metabolic Responses to Change in Disease Activity during Tumor Necrosis Factor Inhibition in Patients with Rheumatoid Arthritis

Madsen, Rasmus, Rantapää-Dahlqvist, Solbritt, Lundstedt, Torbjörn, Moritz, Thomas, Trygg, Johan

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.68 MB

english, 2012

30

A Comparative Proteomic Study of Human Skin Suction Blister Fluid from Healthy Individuals Using Immunodepletion and iTRAQ Labeling

Müller, André C., Breitwieser, Florian P., Fischer, Heinz, Schuster, Christopher, Brandt, Oliver, Colinge, Jacques, Superti-Furga, Giulio, Stingl, Georg, Elbe-Bürger, Adelheid, Bennett, Keiryn L.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 4.08 MB

english, 2012

31

High Calcium Enhances Calcium Oxalate Crystal Binding Capacity of Renal Tubular Cells via Increased Surface Annexin A1 but Impairs Their Proliferation and Healing

Chutipongtanate, Somchai, Fong-ngern, Kedsarin, Peerapen, Paleerath, Thongboonkerd, Visith

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 5.35 MB

english, 2012

32

Metabolomic Analysis of the Effects of Polychlorinated Biphenyls in Nonalcoholic Fatty Liver Disease

Shi, Xue, Wahlang, Banrida, Wei, Xiaoli, Yin, Xinmin, Falkner, K. Cameron, Prough, Russell A., Kim, Seong Ho, Mueller, Eugene G., McClain, Craig J., Cave, Matthew, Zhang, Xiang

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.13 MB

english, 2012

33

Comparison of 4-plex to 8-plex iTRAQ Quantitative Measurements of Proteins in Human Plasma Samples

Pottiez, Gwenael, Wiederin, Jayme, Fox, Howard S., Ciborowski, Pawel

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.28 MB

english, 2012

34

Occurrence and Detection of Phosphopeptide Isomers in Large-Scale Phosphoproteomics Experiments

Courcelles, Mathieu, Bridon, Gaëlle, Lemieux, Sébastien, Thibault, Pierre

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.27 MB

english, 2012

35

Patterns of Gene and Metabolite Define the Effects of Extracellular Osmolality on Kidney Collecting Duct

Choi, Hyo-Jung, Yoon, Yu-Jeong, Kwon, Yong-Kook, Lee, Yu-Jung, Chae, Sehyun, Hwang, Daehee, Hwang, Geum-Sook, Kwon, Tae-Hwan

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.13 MB

english, 2012

36

Proteomic Analysis of Hepatitis C Virus (HCV) Core Protein Transfection and Host Regulator PA28γ Knockout in HCV Pathogenesis: A Network-Based Study

Tripathi, Lokesh P., Kambara, Hiroto, Moriishi, Kohji, Morita, Eiji, Abe, Takayuki, Mori, Yoshio, Chen, Yi-An, Matsuura, Yoshiharu, Mizuguchi, Kenji

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

37

Liquid Chromatography–Mass Spectrometry Based Metabolomics Study of Cloned versus Normal Pigs Fed Either Restricted or Ad Libitum High-Energy Diets

Christensen, Kirstine L., Hedemann, Mette S., Jørgensen, Henry, Stagsted, Jan, Knudsen, Knud Erik B.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 903 KB

english, 2012