Volume 12; Issue 3

Journal of Proteome Research

Volume 12; Issue 3

1

Enrichment of Plasma Membrane Proteins Using Nanoparticle Pellicles: Comparison between Silica and Higher Density Nanoparticles

Choksawangkarn, Waeowalee, Kim, Sung-Kyoung, Cannon, Joe R., Edwards, Nathan J., Lee, Sang Bok, Fenselau, Catherine

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 463 KB

english, 2013

2

Quantitative Proteomic Analysis Revealed N ′-Nitrosonornicotine-induced Down-regulation of Nonmuscle Myosin II and Reduced Cell Migration in Cultured Human Skin Fibroblast Cells

Prins, John M., Wang, Yinsheng

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 428 KB

english, 2013

3

Glycoproteomic Analysis of Serum from Patients with Gastric Precancerous Lesions

Gomes, Catarina, Almeida, Andreia, Ferreira, José Alexandre, Silva, Luísa, Santos-Sousa, Hugo, Pinto-de-Sousa, João, Santos, Lúcio L., Amado, Francisco, Schwientek, Tilo, Levery, Steven B., Mandel, Ul

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.10 MB

english, 2013

4

A Proteomics Search Algorithm Specifically Designed for High-Resolution Tandem Mass Spectra

Wenger, Craig D., Coon, Joshua J.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

5

Quantitative Study of the Interactome of PKCζ Involved in the EGF-induced Tumor Cell Chemotaxis

Chen, Ruibing, Wang, Yanping, Liu, Yan, Zhang, Qing, Zhang, Xiaofang, Zhang, Fei, Shieh, Chia-Hui Paul, Yang, De, Zhang, Ning

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.29 MB

english, 2013

6

A Novel Algorithm for Validating Peptide Identification from a Shotgun Proteomics Search Engine

Jian, Ling, Niu, Xinnan, Xia, Zhonghang, Samir, Parimal, Sumanasekera, Chiranthani, Mu, Zheng, Jennings, Jennifer L., Hoek, Kristen L., Allos, Tara, Howard, Leigh M., Edwards, Kathryn M., Weil, P. Ant

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 545 KB

english, 2013

7

A Coordinated Proteomic Approach for Identifying Proteins that Interact with the E. coli Ribosomal Protein S12

Strader, Michael Brad, Hervey, William Judson, Costantino, Nina, Fujigaki, Suwako, Chen, Cai Yun, Akal-Strader, Ayca, Ihunnah, Chibueze A., Makusky, Anthony J., Court, Donald L., Markey, Sanford P., K

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 364 KB

english, 2013

8

Protein Digestion: An Overview of the Available Techniques and Recent Developments

Switzar, Linda, Giera, Martin, Niessen, Wilfried M. A.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 372 KB

english, 2013

9

Recognition of Methylated Peptides by Drosophila melanogaster Polycomb Chromodomain

Stein, Richard S. L., Li, Nan, He, Wei, Komives, Elizabeth, Wang, Wei

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 494 KB

english, 2013

10

Apoe, Mbl2, and Psp Plasma Protein Levels Correlate with Diabetic Phenotype in NZO Mice—An Optimized Rapid Workflow for SRM-Based Quantification

von Toerne, Christine, Kahle, Melanie, Schäfer, Alexander, Ispiryan, Ruben, Blindert, Marcel, Hrabe De Angelis, Martin, Neschen, Susanne, Ueffing, Marius, Hauck, Stefanie M.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 373 KB

english, 2013

11

Stable Isotope- and Mass Spectrometry-based Metabolomics as Tools in Drug Metabolism: A Study Expanding Tempol Pharmacology

Li, Fei, Pang, Xiaoyan, Krausz, Kristopher W., Jiang, Changtao, Chen, Chi, Cook, John A., Krishna, Murali C., Mitchell, James B., Gonzalez, Frank J., Patterson, Andrew D.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 390 KB

english, 2013

12

Unambiguous Phosphosite Localization using Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)

Frese, Christian K., Zhou, Houjiang, Taus, Thomas, Altelaar, A. F. Maarten, Mechtler, Karl, Heck, Albert J. R., Mohammed, Shabaz

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 240 KB

english, 2013

13

Characterization of Novel O -Glycans Isolated from Tear and Saliva of Ocular Rosacea Patients

Ozcan, Sureyya, An, Hyun Joo, Vieira, Ana C., Park, Gun Wook, Kim, Jae Han, Mannis, Mark J., Lebrilla, Carlito B.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.08 MB

english, 2013

14

PfHPRT: A New Biomarker Candidate of Acute Plasmodium falciparum Infection

Thézénas, Marie L., Huang, Honglei, Njie, Madi, Ramaprasad, Abhinay, Nwakanma, Davis C., Fischer, Roman, Digleria, Katalin, Walther, Michael, Conway, David J., Kessler, Benedikt M., Casals-Pascual, Cl

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.72 MB

english, 2013

15

Proteomic Analysis of Herbaspirillum seropedicae Cultivated in the Presence of Sugar Cane Extract

Cordeiro, Fabio Aparecido, Tadra-Sfeir, Michelle Zibetti, Huergo, Luciano Fernandes, de Oliveira Pedrosa, Fábio, Monteiro, Rose Adele, de Souza, Emanuel Maltempi

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.25 MB

english, 2013

16

Proteome Reference Map of Haloarcula hispanica and Comparative Proteomic and Transcriptomic Analysis of Polyhydroxyalkanoate Biosynthesis under Genetic and Environmental Perturbations

Liu, Hailong, Luo, Yuanming, Han, Jing, Wu, Jinhua, Wu, Zhenfang, Feng, Deqin, Cai, Shuangfeng, Li, Ming, Liu, Jingfang, Zhou, Jian, Xiang, Hua

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 4.60 MB

english, 2013

17

From Cells to Peptides: “One-Stop” Integrated Proteomic Processing Using Amphipols

Ning, Zhibin, Seebun, Deeptee, Hawley, Brett, Chiang, Cheng-Kang, Figeys, Daniel

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 331 KB

english, 2013

18

Global Metabolomics and Targeted Steroid Profiling Reveal That Rifampin, a Strong Human PXR Activator, Alters Endogenous Urinary Steroid Markers

Kim, Bora, Moon, Ju-Yeon, Choi, Man Ho, Yang, Hyang Hee, Lee, SeungHwan, Lim, Kyoung Soo, Yoon, Seo Hyun, Yu, Kyung-Sang, Jang, In-Jin, Cho, Joo-Youn

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.34 MB

english, 2013

19

Microarray Glycoprofiling of CA125 Improves Differential Diagnosis of Ovarian Cancer

Chen, Kowa, Gentry-Maharaj, Aleksandra, Burnell, Matthew, Steentoft, Catharina, Marcos-Silva, Lara, Mandel, Ulla, Jacobs, Ian, Dawnay, Anne, Menon, Usha, Blixt, Ola

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.45 MB

english, 2013

20

Embryonic Sex Induces Differential Expression of Proteins in Bovine Uterine Fluid

Gómez, Enrique, Caamaño, José N., Corrales, Fernando J., Díez, Carmen, Correia-Álvarez, Eva, Martín, David, Trigal, Beatriz, Carrocera, Susana, Mora, María I., Pello-Palma, Jairo, Moreno, Juan F., Muñ

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 4.32 MB

english, 2013

21

Effects of Natalizumab Treatment on the Cerebrospinal Fluid Proteome of Multiple Sclerosis Patients

Stoop, Marcel P., Singh, Vaibhav, Stingl, Christoph, Martin, Roland, Khademi, Mohsen, Olsson, Tomas, Hintzen, Rogier Q., Luider, Theo M.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 386 KB

english, 2013

22

Quantitative Proteomics-Based Analysis Supports a Significant Role of GTG Proteins in Regulation of ABA Response in Arabidopsis Roots

Alvarez, Sophie, Roy Choudhury, Swarup, Hicks, Leslie M., Pandey, Sona

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.03 MB

english, 2013

23

Characterization of Host-Cell Line Specific Glycosylation Profiles of Early Transmitted/Founder HIV-1 gp120 Envelope Proteins

Go, Eden P., Liao, Hua-Xin, Alam, S. Munir, Hua, David, Haynes, Barton F., Desaire, Heather

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 807 KB

english, 2013

24

Comparative Proteome Analyses Reveal that Nitric Oxide Is an Important Signal Molecule in the Response of Rice to Aluminum Toxicity

Yang, Liming, Tian, Dagang, Todd, Christopher D., Luo, Yuming, Hu, Xiangyang

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.27 MB

english, 2013

25

Physiological Adaptation of the Rhodococcus jostii RHA1 Membrane Proteome to Steroids as Growth Substrates

Haußmann, Ute, Wolters, Dirk A., Fränzel, Benjamin, Eltis, Lindsay D., Poetsch, Ansgar

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

26

Lipidomics Identification of Metabolic Biomarkers in Chemically Induced Hypertriglyceridemic Mice

Kwan, Hiu Yee, Hu, Yong-Mei, Chan, Chi Leung, Cao, Hui-Hui, Cheng, Chi Yan, Pan, Si-Yuan, Tse, Kai Wing, Wu, Yiu Cheong, Yu, Zhi-Ling, Fong, Wang Fun

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.37 MB

english, 2013

27

An iTRAQ Proteomic Study Reveals an Association between Diet-Induced Enhanced Fatty Acid Metabolism and the Development of Glucose Intolerance in Prediabetic Mice

Ho, Jennifer H., Lee, Oscar K., Fu, Yun-Ju, Shih, Hung-Ta, Tseng, Chien-Yu, Chung, Cheng-Chih, Han, Chia-Li, Chen, Yu-Ju

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.09 MB

english, 2013

28

Proteomic Comparison of Historic and Recently Emerged Hypervirulent Clostridium difficile Strains

Chen, Jenn-Wei, Scaria, Joy, Mao, Chunhong, Sobral, Bruno, Zhang, Sheng, Lawley, Trevor, Chang, Yung-Fu

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

29

Transcriptome and Quantitative Proteome Analysis Reveals Molecular Processes Associated with Larval Metamorphosis in the Polychaete Pseudopolydora vexillosa

Chandramouli, Kondethimmahalli H., Sun, Jin, Mok, Flora SY, Liu, Lingli, Qiu, Jian-Wen, Ravasi, Timothy, Qian, Pei-Yuan

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.82 MB

english, 2013

30

Simultaneous Treatment with Tebuconazole and Abscisic Acid Induces Drought and Salinity Stress Tolerance in Arabidopsis thaliana by Maintaining Key Plastid Protein Levels

Horn, Ruth, Chudobova, Ivana, Hänsel, Ulrike, Herwartz, Denise, Koskull-Döring, Pascal von, Schillberg, Stefan

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 4.69 MB

english, 2013

31

Separating Smoking-Related Diseases Using NMR-Based Metabolomics of Exhaled Breath Condensate

de Laurentiis, Guglielmo, Paris, Debora, Melck, Dominique, Montuschi, Paolo, Maniscalco, Mauro, Bianco, Andrea, Sofia, Matteo, Motta, Andrea

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.29 MB

english, 2013

32

Mass Spectrometric Analysis of Neutral and Anionic N-Glycans from a Dictyostelium discoideum Model for Human Congenital Disorder of Glycosylation CDG IL

Hykollari, Alba, Balog, Crina I. A., Rendić, Dubravko, Braulke, Thomas, Wilson, Iain B. H., Paschinger, Katharina

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.58 MB

english, 2013

33

Microfluidic Validation of Diagnostic Protein Markers for Spontaneous Cerebrospinal Fluid Rhinorrhea

Apori, Akwasi A., Brozynski, Martina N., El-Sayed, Ivan H., Herr, Amy E.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.17 MB

english, 2013

34

Changes Induced by Fe Deficiency and Fe Resupply in the Root Protein Profile of a Peach-Almond Hybrid Rootstock

Rodríguez-Celma, Jorge, Lattanzio, Giuseppe, Jiménez, Sergio, Briat, Jean-Francois, Abadía, Javier, Abadía, Anunciación, Gogorcena, Yolanda, López-Millán, Ana-Flor

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.61 MB

english, 2013

35

Urinary Phenotyping Indicates Weight Loss-Independent Metabolic Effects of Roux-en-Y Gastric Bypass in Mice

Seyfried, Florian, Li, Jia V., Miras, Alexander D., Cluny, Nina L., Lannoo, Matthias, Fenske, Wiebke K., Sharkey, Keith A, Nicholson, Jeremy K., le Roux, Carel W., Holmes, Elaine

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.13 MB

english, 2013

36

Metabolic Profiling to Identify Potential Serum Biomarkers for Gastric Ulceration Induced by Nonsteroid Anti-Inflammatory Drugs

Takeuchi, Kenichiro, Ohishi, Maki, Ota, Sana, Suzumura, Kenichi, Naraoka, Hitoshi, Ohata, Takeji, Seki, Jiro, Miyamae, Youichi, Honma, Masashi, Soga, Tomoyoshi

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.47 MB

english, 2013

37

Hybrid Feature Detection and Information Accumulation Using High-Resolution LC–MS Metabolomics Data

Yu, Tianwei, Park, Youngja, Li, Shuzhao, Jones, Dean P.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.01 MB

english, 2013

38

Subcellular Proteomics Reveals a Role for Nucleo-cytoplasmic Trafficking at the DNA Replication Origin Activation Checkpoint

Mulvey, Claire M., Tudzarova, Slavica, Crawford, Mark, Williams, Gareth H., Stoeber, Kai, Godovac-Zimmermann, Jasminka

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.94 MB

english, 2013

39

Verification of Multimarkers for Detection of Early Stage Diabetic Retinopathy Using Multiple Reaction Monitoring

Kim, Kyunggon, Kim, Sang Jin, Han, Dohyun, Jin, Jonghwa, Yu, Jiyoung, Park, Kyong Soo, Yu, Hyeong Gon, Kim, Youngsoo

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.57 MB

english, 2013

40

SecretePipe: A Screening Pipeline for Secreted Proteins with Competence to Identify Potential Membrane-Bound Shed Markers

Tien, Wei-Sheng, Chen, Yen-Tsuen, Wu, Kun-Pin

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.20 MB

english, 2013

41

Latent Biochemical Relationships in the Blood–Milk Metabolic Axis of Dairy Cows Revealed by Statistical Integration of 1 H NMR Spectroscopic Data

Maher, Anthony D., Hayes, Benjamin, Cocks, Benjamin, Marett, Leah, Wales, William J, Rochfort, Simone J.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.59 MB

english, 2013