Volume 12; Issue 5

Journal of Proteome Research

Volume 12; Issue 5

1

Sources of Technical Variability in Quantitative LC–MS Proteomics: Human Brain Tissue Sample Analysis

Piehowski, Paul D., Petyuk, Vladislav A., Orton, Daniel J., Xie, Fang, Moore, Ronald J., Ramirez-Restrepo, Manuel, Engel, Anzhelika, Lieberman, Andrew P., Albin, Roger L., Camp, David G., Smith, Richa

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.21 MB

english, 2013

2

The Shotgun Proteomic Study of the Human ThinPrep Cervical Smear Using iTRAQ Mass-Tagging and 2D LC-FT-Orbitrap-MS: The Detection of the Human Papillomavirus at the Protein Level

Papachristou, Evaggelia K., Roumeliotis, Theodoros I., Chrysagi, Argyro, Trigoni, Chrysanthi, Charvalos, Ekatherina, Townsend, Paul A., Pavlakis, Kitty, Garbis, Spiros D.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.87 MB

english, 2013

3

Universal Quantitative Kinase Assay Based on Diagonal SCX Chromatography and Stable Isotope Dimethyl Labeling Provides High-definition Kinase Consensus Motifs for PKA and Human Mps1

Hennrich, Marco L., Marino, Fabio, Groenewold, Vincent, Kops, Geert J. P. L., Mohammed, Shabaz, Heck, Albert J. R.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 19.34 MB

english, 2013

4

Cell Death Proteomics Database: Consolidating Proteomics Data on Cell Death

Arntzen, Magnus Ø., Bull, Vibeke H., Thiede, Bernd

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 588 KB

english, 2013

5

PPE38 of Mycobacterium marinum Triggers the Cross-Talk of Multiple Pathways Involved in the Host Response, As Revealed by Subcellular Quantitative Proteomics

Wang, Hui, Dong, Dandan, Tang, Siwei, Chen, Xian, Gao, Qian

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.72 MB

english, 2013

6

Extensive in vivo Human Milk Peptidomics Reveals Specific Proteolysis Yielding Protective Antimicrobial Peptides

Dallas, David C., Guerrero, Andres, Khaldi, Nora, Castillo, Patricia A., Martin, William F., Smilowitz, Jennifer T., Bevins, Charles L., Barile, Daniela, German, J. Bruce, Lebrilla, Carlito B.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.84 MB

english, 2013

7

NMR Metabolomics Analysis of the Effects of 5-Lipoxygenase Inhibitors on Metabolism in Glioblastomas

Morin, Pier Jr, Ferguson, Dean, LeBlanc, Luc M., Hébert, Martin J. G., Paré, Aurélie F., Jean-François, Jacques, Surette, Marc E., Touaibia, Mohamed, Cuperlovic-Culf, Miroslava

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 4.68 MB

english, 2013

8

Site-specific Quantitative Analysis of Overglycosylation of Collagen in Osteogenesis Imperfecta Using Hydrazide Chemistry and SILAC

Taga, Yuki, Kusubata, Masashi, Ogawa-Goto, Kiyoko, Hattori, Shunji

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 369 KB

english, 2013

9

Dimethyl-Labeling-Based Protein Quantification and Pathway Search: A Novel Method of Spinal Cord Analysis Applicable for Neurological Studies

Sui, Ping, Watanabe, Hiroyuki, Ossipov, Michael H., Porreca, Frank, Bakalkin, Georgy, Bergquist, Jonas, Artemenko, Konstantin

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 308 KB

english, 2013

10

Glycocapture-Assisted Global Quantitative Proteomics (gagQP) Reveals Multiorgan Responses in Serum Toxicoproteome

Sun, Bingyun, Utleg, Angelita G., Hu, Zhiyuan, Qin, Shizhen, Keller, Andrew, Lorang, Cynthia, Gray, Li, Brightman, Amy, Lee, Denis, Alexander, Vinita M., Ranish, Jeffrey A., Moritz, Robert L., Hood, L

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 458 KB

english, 2013

11

Modified MuDPIT Separation Identified 4488 Proteins in a System-wide Analysis of Quiescence in Yeast

Webb, Kristofor J., Xu, Tao, Park, Sung Kyu, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 400 KB

english, 2013

12

Predicting Tryptic Cleavage from Proteomics Data Using Decision Tree Ensembles

Fannes, Thomas, Vandermarliere, Elien, Schietgat, Leander, Degroeve, Sven, Martens, Lennart, Ramon, Jan

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 276 KB

english, 2013

13

Metabolomics Reveals Aging-associated Attenuation of Noninvasive Radiation Biomarkers in Mice: Potential Role of Polyamine Catabolism and Incoherent DNA Damage-repair

Manna, Soumen K., Krausz, Kristopher W., Bonzo, Jessica A., Idle, Jeffrey R., Gonzalez, Frank J.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.83 MB

english, 2013

14

The Identification of New Biomarkers for Identifying and Monitoring Kidney Disease and Their Translation into a Rapid Mass Spectrometry-Based Test: Evidence of Presymptomatic Kidney Disease in Pediatric Fabry and Type-I Diabetic Patients

Manwaring, Victoria, Heywood, Wendy E., Clayton, Robert, Lachmann, Robin H., Keutzer, Joan, Hindmarsh, Peter, Winchester, Bryan, Heales, Simon, Mills, Kevin

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.92 MB

english, 2013

15

Proteomic Analysis of Human Bronchoalveolar Lavage Fluid after Subsgemental Exposure

Foster, Matthew W., Thompson, J. Will, Que, Loretta G., Yang, Ivana V., Schwartz, David A., Moseley, M. Arthur, Marshall, Harvey E.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.91 MB

english, 2013

16

High-Throughput Screening for Native Autoantigen–Autoantibody Complexes Using Antibody Microarrays

Rho, Jung-hyun, Lampe, Paul D.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.49 MB

english, 2013

17

The Conserved Set of Host Proteins Incorporated into HIV-1 Virions Suggests a Common Egress Pathway in Multiple Cell Types

Linde, Michael E., Colquhoun, David R., Ubaida Mohien, Ceereena, Kole, Thomas, Aquino, Veronica, Cotter, Robert, Edwards, Nathan, Hildreth, James E.K., Graham, David R.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

18

Proteomic Analysis of Plasmodium falciparum Schizonts Reveals Heparin-Binding Merozoite Proteins

Zhang, Yan, Jiang, Ning, Lu, Huijun, Hou, Nan, Piao, Xianyu, Cai, Pengfei, Yin, Jigang, Wahlgren, Mats, Chen, Qijun

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

19

Evaluation of Drosophila Metabolic Labeling Strategies for in Vivo Quantitative Proteomic Analyses with Applications to Early Pupa Formation and Amino Acid Starvation

Chang, Ying-Che, Tang, Hong-Wen, Liang, Suh-Yuen, Pu, Tsung-Hsien, Meng, Tzu-Ching, Khoo, Kay-Hooi, Chen, Guang-Chao

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.32 MB

english, 2013

20

Drafting the CLN3 Protein Interactome in SH-SY5Y Human Neuroblastoma Cells: A Label-free Quantitative Proteomics Approach

Scifo, Enzo, Szwajda, Agnieszka, Dębski, Janusz, Uusi-Rauva, Kristiina, Kesti, Tapio, Dadlez, Michał, Gingras, Anne-Claude, Tyynelä, Jaana, Baumann, Marc H., Jalanko, Anu, Lalowski, Maciej

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.32 MB

english, 2013

21

Global Quantitative SILAC Phosphoproteomics Reveals Differential Phosphorylation Is Widespread between the Procyclic and Bloodstream Form Lifecycle Stages of Trypanosoma brucei

Urbaniak, Michael D., Martin, David M. A., Ferguson, Michael A. J.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 7.14 MB

english, 2013

22

Quantitative Proteomic Characterization of Ethanol-Responsive Pathways in Rat Microglial Cells

Bell-Temin, Harris, Zhang, Ping, Chaput, Dale, King, Michael A., You, Min, Liu, Bin, Stevens, Stanley M.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.86 MB

english, 2013

23

Correction for Neurotoxin-Induced Neuropeptide Perturbations in Striatum of Neonatal Rats

Karlsson, Oskar, Kultima, Kim, Wadensten, Henrik, Nilsson, Anna, Roman, Erika, Andrén, Per E., Brittebo, Eva B.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 115 KB

english, 2013

24

Spectrum-based Method to Generate Good Decoy Libraries for Spectral Library Searching in Peptide Identifications

Cheng, Chia-Ying, Tsai, Chia-Feng, Chen, Yu-Ju, Sung, Ting-Yi, Hsu, Wen-Lian

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 590 KB

english, 2013

25

Quantitative Analysis of the Human AKR Family Members in Cancer Cell Lines Using the mTRAQ/MRM Approach

Zhang, Shenyan, Wen, Bo, Zhou, Baojin, Yang, Lei, Cha, Chao, Xu, Shaoxing, Qiu, Xuemei, Wang, Quanhui, Sun, Haidan, Lou, Xiaomin, Zi, Jin, Zhang, Yong, Lin, Liang, Liu, Siqi

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.69 MB

english, 2013

26

Comparative Network-Based Recovery Analysis and Proteomic Profiling of Neurological Changes in Valproic Acid-Treated Mice

Goh, Wilson Wen Bin, Sergot, Marek J., Sng, Judy Cg, Wong, Limsoon

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.13 MB

english, 2013

27

1,2,3,4-Diepoxybutane-Induced DNA–Protein Cross-Linking in Human Fibrosarcoma (HT1080) Cells

Gherezghiher, Teshome B., Ming, Xun, Villalta, Peter W., Campbell, Colin, Tretyakova, Natalia Y.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 4.13 MB

english, 2013

28

iTRAQ-Based Proteomic Profiling of the Barnacle Balanus amphitrite in Response to the Antifouling Compound Meleagrin

Han, Zhuang, Sun, Jin, Zhang, Yu, He, Fei, Xu, Ying, Matsumura, Kiyotaka, He, Li-Sheng, Qiu, Jian-Wen, Qi, Shu-Hua, Qian, Pei-Yuan

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 941 KB

english, 2013

29

Functional Proteome of Macrophage Carried Nanoformulated Antiretroviral Therapy Demonstrates Enhanced Particle Carrying Capacity

Martinez-Skinner, Andrea L., Veerubhotla, Ram S., Liu, Han, Xiong, Huangui, Yu, Fang, McMillan, JoEllyn M., Gendelman, Howard E.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.34 MB

english, 2013

30

Identification of New Apolipoprotein-CIII Glycoforms with Ultrahigh Resolution MALDI-FTICR Mass Spectrometry of Human Sera

Nicolardi, Simone, van der Burgt, Yuri E. M., Dragan, Irina, Hensbergen, Paul J., Deelder, André M.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.30 MB

english, 2013

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