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Volume 12; Issue 7
Main
Journal of Proteome Research
Volume 12; Issue 7
Journal of Proteome Research
Volume 12; Issue 7
1
Comprehensive Proteomic Analysis of Trypanosoma cruzi Epimastigote Cell Surface Proteins by Two Complementary Methods
Queiroz, Rayner M. L.
,
Charneau, Sébastien
,
Motta, Flávia N.
,
Santana, Jaime M.
,
Roepstorff, Peter
,
Ricart, Carlos A. O.
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 2.20 MB
Your tags:
english, 2013
2
Blood Plasma Reference Material: A Global Resource for Proteomic Research
Malm, Johan
,
Danmyr, Pia
,
Nilsson, Rolf
,
Appelqvist, Roger
,
Végvári, Ákos
,
Marko-Varga, György
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.12 MB
Your tags:
english, 2013
3
Evaluation and Optimization of Mass Spectrometric Settings during Data-dependent Acquisition Mode: Focus on LTQ-Orbitrap Mass Analyzers
Kalli, Anastasia
,
Smith, Geoffrey T.
,
Sweredoski, Michael J.
,
Hess, Sonja
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 3.10 MB
Your tags:
english, 2013
4
Proteomic Analysis Reveals Novel Extracellular Virulence-Associated Proteins and Functions Regulated by the Diffusible Signal Factor (DSF) in Xanthomonas oryzae pv. oryzicola
Qian, Guoliang
,
Zhou, Yijing
,
Zhao, Yancun
,
Song, Zhiwei
,
Wang, Suyan
,
Fan, Jiaqin
,
Hu, Baishi
,
Venturi, Vittorio
,
Liu, Fengquan
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 4.31 MB
Your tags:
english, 2013
5
Mapping Proteolytic Processing in the Secretome of Gastric Cancer-Associated Myofibroblasts Reveals Activation of MMP-1, MMP-2, and MMP-3
Holmberg, Christopher
,
Ghesquière, Bart
,
Impens, Francis
,
Gevaert, Kris
,
Kumar, J. Dinesh
,
Cash, Nicole
,
Kandola, Sandhir
,
Hegyi, Peter
,
Wang, Timothy C.
,
Dockray, Graham J.
,
Varro, Andrea
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 416 KB
Your tags:
english, 2013
6
Changes in Milk Proteome and Metabolome Associated with Dry Period Length, Energy Balance, and Lactation Stage in Postparturient Dairy Cows
Lu, Jing
,
Antunes Fernandes, Elsa
,
Páez Cano, Ana Elizabeth
,
Vinitwatanakhun, Jantipa
,
Boeren, Sjef
,
van Hooijdonk, Toon
,
van Knegsel, Ariette
,
Vervoort, Jacques
,
Hettinga, Kasper Arthur
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.55 MB
Your tags:
english, 2013
7
Quantitative Proteomic Analysis Identifies CPNE3 as a Novel Metastasis-promoting Gene in NSCLC
Lin, He-chun
,
Zhang, Fang-lin
,
Geng, Qin
,
Yu, Tao
,
Cui, Yong-qi
,
Liu, Xiao-hui
,
Li, Jing
,
Yan, Ming-xia
,
Liu, Lei
,
He, Xiang-huo
,
Li, Jin-jun
,
Yao, Ming
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.58 MB
Your tags:
english, 2013
8
Denoising Peptide Tandem Mass Spectra for Spectral Libraries: A Bayesian Approach
Shao, Wenguang
,
Lam, Henry
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.93 MB
Your tags:
english, 2013
9
Automated Analysis of Hemoglobin Variants Using NanoLC–MS and Customized Databases
Das, Rajdeep
,
Mitra, Gopa
,
Mathew, Boby
,
Ross, Cecil
,
Bhat, Vijay
,
Mandal, Amit Kumar
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.18 MB
Your tags:
english, 2013
10
Heterogeneous Nuclear Ribonucleoproteins and Their Interactors Are a Major Class of Deregulated Proteins in Anaplastic Astrocytoma: A Grade III Malignant Glioma
Polisetty, Ravindra Varma
,
Gautam, Poonam
,
Gupta, Manoj Kumar
,
Sharma, Rakesh
,
Uppin, Megha S.
,
Challa, Sundaram
,
Ankathi, Praveen
,
Purohit, Aniruddh K.
,
Renu, Durairaj
,
Harsha, H. C.
,
Pandey, Akhiles
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.22 MB
Your tags:
english, 2013
11
Characterization of Molecules Binding to the 70K N-Terminal Region of Fibronectin by IFAST Purification Coupled with Mass Spectrometry
Moussavi-Harami, S. Farshid
,
Annis, Douglas S.
,
Ma, Wenjiang
,
Berry, Scott M.
,
Coughlin, Emma E.
,
Strotman, Lindsay N.
,
Maurer, Lisa M.
,
Westphall, Michael S.
,
Coon, Joshua J.
,
Mosher, Deane F.
,
Beebe
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 11.34 MB
Your tags:
english, 2013
12
Phosphoproteomic Analysis of Differentiating Leishmania Parasites Reveals a Unique Stage-Specific Phosphorylation Motif
Tsigankov, Polina
,
Gherardini, Pier Federico
,
Helmer-Citterich, Manuela
,
Späth, Gerald F.
,
Zilberstein, Dan
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 2.65 MB
Your tags:
english, 2013
13
Hexavalent Chromium-induced Alteration of Proteomic Landscape in Human Skin Fibroblast Cells
Guo, Lei
,
Xiao, Yongsheng
,
Wang, Yinsheng
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.33 MB
Your tags:
english, 2013
14
Rapid Assessment of RNAi-mediated Protein Depletion by Selected Reaction Monitoring Mass Spectrometry
Glukhova, Veronika A.
,
Tomazela, Daniela M.
,
Findlay, Geoffrey D.
,
Monnat, Raymond J.
,
MacCoss, Michael J.
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.88 MB
Your tags:
english, 2013
15
Statistically Enhanced Spectral Counting Approach to TCDD Cardiac Toxicity in the Adult Zebrafish Heart
Zhang, Jiang
,
Lanham, Kevin A
,
Heideman, Warren
,
Peterson, Richard E.
,
Li, Lingjun
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.25 MB
Your tags:
english, 2013
16
Moving Pieces in a Venomic Puzzle: Unveiling Post-translationally Modified Toxins from Tityus serrulatus
Verano-Braga, Thiago
,
Dutra, Alexandre A. A.
,
León, Ileana R.
,
Melo-Braga, Marcella N.
,
Roepstorff, Peter
,
Pimenta, Adriano M. C.
,
Kjeldsen, Frank
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 4.35 MB
Your tags:
english, 2013
17
Targeted Quantification of Low ng/mL Level Proteins in Human Serum without Immunoaffinity Depletion
Shi, Tujin
,
Sun, Xuefei
,
Gao, Yuqian
,
Fillmore, Thomas L.
,
Schepmoes, Athena A.
,
Zhao, Rui
,
He, Jintang
,
Moore, Ronald J.
,
Kagan, Jacob
,
Rodland, Karin D.
,
Liu, Tao
,
Liu, Alvin Y.
,
Smith, Richard D.
,
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.33 MB
Your tags:
english, 2013
18
Two Traditional Maize Inbred Lines of Contrasting Technological Abilities Are Discriminated by the Seed Flour Proteome
Pinheiro, Carla
,
Sergeant, Kjell
,
Machado, Cátia M.
,
Renaut, Jenny
,
Ricardo, Cândido P.
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.36 MB
Your tags:
english, 2013
19
Chronic Ethanol Consumption Alters Mammalian Gastrointestinal Content Metabolites
Xie, Guoxiang
,
Zhong, Wei
,
Zheng, Xiaojiao
,
Li, Qiong
,
Qiu, Yunping
,
Li, Houkai
,
Chen, Huiyuan
,
Zhou, Zhanxiang
,
Jia, Wei
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.32 MB
Your tags:
english, 2013
20
Influenza A Infection of Primary Human Airway Epithelial Cells Up-Regulates Proteins Related to Purine Metabolism and Ubiquitin-Related Signaling
Kroeker, Andrea L.
,
Ezzati, Peyman
,
Coombs, Kevin M.
,
Halayko, Andrew J.
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 804 KB
Your tags:
english, 2013
21
Improved N α -Acetylated Peptide Enrichment Following Dimethyl Labeling and SCX
Chen, Sin-Hong
,
Chen, Chiy-Rong
,
Chen, Shu-Hui
,
Li, Ding-Tzai
,
Hsu, Jue-Liang
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 581 KB
Your tags:
english, 2013
22
Degradation Rate of Mitochondrial Proteins in Arabidopsis thaliana Cells
Nelson, Clark J.
,
Li, Lei
,
Jacoby, Richard P.
,
Millar, A. Harvey
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.36 MB
Your tags:
english, 2013
23
Combined N-Glycome and N-Glycoproteome Analysis of the Lotus japonicus Seed Globulin Fraction Shows Conservation of Protein Structure and Glycosylation in Legumes
Dam, Svend
,
Thaysen-Andersen, Morten
,
Stenkjær, Eva
,
Lorentzen, Andrea
,
Roepstorff, Peter
,
Packer, Nicolle H.
,
Stougaard, Jens
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.65 MB
Your tags:
english, 2013
24
A New Method for the Rapid Diagnosis of Protein N-linked Congenital Disorders of Glycosylation
Heywood, Wendy E.
,
Mills, Philippa
,
Grunewald, Stephanie
,
Worthington, Viki
,
Jaeken, Jaak
,
Carreno, Gabriela
,
Lemonde, Hugh
,
Clayton, Peter T.
,
Mills, Kevin
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 3.22 MB
Your tags:
english, 2013
25
Altered Expression of Sialylated Glycoproteins in Ovarian Cancer Sera Using Lectin-based ELISA Assay and Quantitative Glycoproteomics Analysis
Wu, Jing
,
Xie, Xiaolei
,
Nie, Song
,
Buckanovich, Ronald J.
,
Lubman, David M.
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 3.82 MB
Your tags:
english, 2013
26
Multiple Univariate Data Analysis Reveals the Inulin Effects on the High-Fat-Diet Induced Metabolic Alterations in Rat Myocardium and Testicles in the Preobesity State
Duan, Yixuan
,
An, Yanpeng
,
Li, Ning
,
Liu, Bifeng
,
Wang, Yulan
,
Tang, Huiru
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.42 MB
Your tags:
english, 2013
27
Identification of Human Protein Interaction Domains using an ORFeome-based Yeast Two-hybrid Fragment Library
Waaijers, Selma
,
Koorman, Thijs
,
Kerver, Jana
,
Boxem, Mike
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 2.46 MB
Your tags:
english, 2013
28
Alterations of Histone H1 Phosphorylation During Bladder Carcinogenesis
Telu, Kelly H.
,
Abbaoui, Besma
,
Thomas-Ahner, Jennifer M.
,
Zynger, Debra L.
,
Clinton, Steven K.
,
Freitas, Michael A.
,
Mortazavi, Amir
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.49 MB
Your tags:
english, 2013
29
Neuron Enriched Nuclear Proteome Isolated from Human Brain
Dammer, Eric B.
,
Duong, Duc M.
,
Diner, Ian
,
Gearing, Marla
,
Feng, Yue
,
Lah, James J.
,
Levey, Allan I.
,
Seyfried, Nicholas T.
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 3.75 MB
Your tags:
english, 2013
30
Functional Classification of Cellular Proteome Profiles Support the Identification of Drug Resistance Signatures in Melanoma Cells
Paulitschke, Verena
,
Haudek-Prinz, Verena
,
Griss, Johannes
,
Berger, Walter
,
Mohr, Thomas
,
Pehamberger, Hubert
,
Kunstfeld, Rainer
,
Gerner, Christopher
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 3.03 MB
Your tags:
english, 2013
31
Deconvolution of Mixture Spectra and Increased Throughput of Peptide Identification by Utilization of Intensified Complementary Ions Formed in Tandem Mass Spectrometry
Kryuchkov, Fedor
,
Verano-Braga, Thiago
,
Hansen, Thomas A.
,
Sprenger, Richard R.
,
Kjeldsen, Frank
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.50 MB
Your tags:
english, 2013
32
Native Protein Complexes in the Cytoplasm of Red Blood Cells
Pallotta, Valeria
,
D’Alessandro, Angelo
,
Rinalducci, Sara
,
Zolla, Lello
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 3.95 MB
Your tags:
english, 2013
33
Proteome-wide Dysregulation by Glucose-6-phosphate Dehydrogenase (G6PD) Reveals a Novel Protective Role for G6PD in Aflatoxin B 1 -Mediated Cytotoxicity
Lin, Hsin-Ru
,
Wu, Chih-Ching
,
Wu, Yi-Hsuan
,
Hsu, Chia-Wei
,
Cheng, Mei-Ling
,
Chiu, Daniel Tsun-Yee
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 4.27 MB
Your tags:
english, 2013
34
Adaptation of a Commonly Used, Chemically Defined Medium for Human Embryonic Stem Cells to Stable Isotope Labeling with Amino Acids in Cell Culture
Liberski, Albert R.
,
Al-Noubi, Muna N.
,
Rahman, Zahra H.
,
Halabi, Najeeb M.
,
Dib, Shaima S.
,
Al-Mismar, Rasha
,
Billing, Anja M.
,
Krishnankutty, Roopesh
,
Ahmad, Faizzan S.
,
Raynaud, Christophe M.
,
Rafi
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 3.14 MB
Your tags:
english, 2013
35
Identification of Autocrine Growth Factors Secreted by CHO Cells for Applications in Single-Cell Cloning Media
Lim, U Ming
,
Yap, Miranda Gek Sim
,
Lim, Yoon Pin
,
Goh, Lin-Tang
,
Ng, Say Kong
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.58 MB
Your tags:
english, 2013
36
Metabolic Phenotype Modulation by Caloric Restriction in a Lifelong Dog Study
Richards, Selena E.
,
Wang, Yulan
,
Claus, Sandrine P.
,
Lawler, Dennis
,
Kochhar, Sunil
,
Holmes, Elaine
,
Nicholson, Jeremy K.
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.03 MB
Your tags:
english, 2013
37
Use of Theoretical Peptide Distributions in Phosphoproteome Analysis
Kalita, Mridul
,
Kasumov, Takhar
,
Brasier, Allan R.
,
Sadygov, Rovshan G.
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 359 KB
Your tags:
english, 2013
38
Comparative Informatics Analysis to Evaluate Site-Specific Protein Oxidation in Multidimensional LC–MS/MS Data
McClintock, Carlee S.
,
Parks, Jerry M.
,
Bern, Marshall
,
GhattyVenkataKrishna, Pavan K.
,
Hettich, Robert L.
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 408 KB
Your tags:
english, 2013
39
HR-MAS NMR Tissue Metabolomic Signatures Cross-validated by Mass Spectrometry Distinguish Bladder Cancer from Benign Disease
Tripathi, Pratima
,
Somashekar, Bagganahalli S.
,
Ponnusamy, M.
,
Gursky, Amy
,
Dailey, Stephen
,
Kunju, Priya
,
Lee, Cheryl T.
,
Chinnaiyan, Arul M.
,
Rajendiran, Thekkelnaycke M.
,
Ramamoorthy, Ayyalusamy
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.87 MB
Your tags:
english, 2013
40
Microbial–Mammalian Cometabolites Dominate the Age-associated Urinary Metabolic Phenotype in Taiwanese and American Populations
Swann, Jonathan R.
,
Spagou, Konstantina
,
Lewis, Matthew
,
Nicholson, Jeremy K.
,
Glei, Dana A.
,
Seeman, Teresa E.
,
Coe, Christopher L.
,
Goldman, Noreen
,
Ryff, Carol D.
,
Weinstein, Maxine
,
Holmes, Elaine
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 2.72 MB
Your tags:
english, 2013
41
Characterization of the Novel Broad-Spectrum Kinase Inhibitor CTx-0294885 As an Affinity Reagent for Mass Spectrometry-Based Kinome Profiling
Zhang, Luxi
,
Holmes, Ian P.
,
Hochgräfe, Falko
,
Walker, Scott R.
,
Ali, Naveid A.
,
Humphrey, Emily S.
,
Wu, Jianmin
,
de Silva, Melanie
,
Kersten, Wilhelmus J. A.
,
Connor, Theresa
,
Falk, Hendrik
,
Allan, Ly
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 1.23 MB
Your tags:
english, 2013
42
MucoRice-cholera Toxin B-subunit, a Rice-based Oral Cholera Vaccine, Down-regulates the Expression of α-Amylase/trypsin Inhibitor-like Protein Family as Major Rice Allergens
Kurokawa, Shiho
,
Nakamura, Rika
,
Mejima, Mio
,
Kozuka-Hata, Hiroko
,
Kuroda, Masaharu
,
Takeyama, Natsumi
,
Oyama, Masaaki
,
Satoh, Shigeru
,
Kiyono, Hiroshi
,
Masumura, Takehiro
,
Teshima, Reiko
,
Yuki, Yoshi
Journal:
Journal of Proteome Research
Year:
2013
Language:
english
File:
PDF, 982 KB
Your tags:
english, 2013
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