Volume 13; Issue 3

Journal of Proteome Research

Volume 13; Issue 3

1

Label-Free Quantitative Proteomics Analysis of Antibiotic Response in Staphylococcus aureus to Oxacillin

Liu, Xiaofen, Hu, Yingwei, Pai, Pei-Jing, Chen, Daijie, Lam, Henry

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.21 MB

english, 2014

2

Untargeted Metabolomic Profiling in Saliva of Smokers and Nonsmokers by a Validated GC-TOF-MS Method

Mueller, Daniel C., Piller, Markus, Niessner, Reinhard, Scherer, Max, Scherer, Gerhard

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 823 KB

english, 2014

3

Secretome Analysis of Testicular Peritubular Cells: A Window into the Human Testicular Microenvironment and the Spermatogonial Stem Cell Niche in Man

Flenkenthaler, Florian, Windschüttl, Stefanie, Fröhlich, Thomas, Schwarzer, J. Ullrich, Mayerhofer, Artur, Arnold, Georg J.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.60 MB

english, 2014

4

Global Phosphoproteomic Analysis of Daphnia pulex Reveals Evolutionary Conservation of Ser/Thr/Tyr Phosphorylation

Kwon, Oh Kwang, Sim, JuHee, Yun, Ki Na, Kim, Jin Young, Lee, Sangkyu

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

5

Discovery of Human sORF-Encoded Polypeptides (SEPs) in Cell Lines and Tissue

Ma, Jiao, Ward, Carl C., Jungreis, Irwin, Slavoff, Sarah A., Schwaid, Adam G., Neveu, John, Budnik, Bogdan A., Kellis, Manolis, Saghatelian, Alan

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 764 KB

english, 2014

6

Stoichiometry of Saccharomyces cerevisiae Lysine Methylation: Insights into Non-histone Protein Lysine Methyltransferase Activity

Hart-Smith, Gene, Chia, Samantha Z., Low, Jason K. K., McKay, Matthew J., Molloy, Mark P., Wilkins, Marc R.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 661 KB

english, 2014

7

Quantitative Proteomics Reveals the Role of Protein Phosphorylation in Rice Embryos during Early Stages of Germination

Han, Chao, Yang, Pingfang, Sakata, Katsumi, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.55 MB

english, 2014

8

Nitration of the Birch Pollen Allergen Bet v 1.0101: Efficiency and Site-Selectivity of Liquid and Gaseous Nitrating Agents

Reinmuth-Selzle, Kathrin, Ackaert, Chloé, Kampf, Christopher J., Samonig, Martin, Shiraiwa, Manabu, Kofler, Stefan, Yang, Hong, Gadermaier, Gabriele, Brandstetter, Hans, Huber, Christian G., Duschl, A

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.19 MB

english, 2014

9

Identification of Chemoresistance-Related Cell-Surface Glycoproteins in Leukemia Cells and Functional Validation of Candidate Glycoproteins

Sun, Zhen, Dong, Jiaqiang, Zhang, Song, Hu, Zhengyan, Cheng, Kai, Li, Kai, Xu, Bo, Ye, Mingliang, Nie, Yongzhan, Fan, Daiming, Zou, Hanfa

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 282 KB

english, 2014

10

Using Mass Spectrometry to Monitor Monoclonal Immunoglobulins in Patients with a Monoclonal Gammopathy

Barnidge, David R., Dasari, Surendra, Botz, Chad M., Murray, Danelle H., Snyder, Melissa R., Katzmann, Jerry A., Dispenzieri, Angela, Murray, David L.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.27 MB

english, 2014

11

Label-Free Quantitative Phosphoproteomic Analysis Reveals Differentially Regulated Proteins and Pathway in PRRSV-Infected Pulmonary Alveolar Macrophages

Luo, Rui, Fang, Liurong, Jin, Hui, Wang, Dang, An, Kang, Xu, Ningzhi, Chen, Huanchun, Xiao, Shaobo

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.10 MB

english, 2014

12

Proteomic Profile of Cryptococcus neoformans Biofilm Reveals Changes in Metabolic Processes

Santi, Lucélia, Beys-da-Silva, Walter O., Berger, Markus, Calzolari, Diego, Guimarães, Jorge A., Moresco, James J., Yates, John R.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

13

Molecular Characterization and Functional Analysis of Outer Membrane Vesicles from the Antarctic Bacterium Pseudomonas syringae Suggest a Possible Response to Environmental Conditions

Kulkarni, Heramb M., Swamy, Ch. V. B., Jagannadham, Medicharla V.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 460 KB

english, 2014

14

Comparative Quantitative Proteomics Analysis of the ABA Response of Roots of Drought-Sensitive and Drought-Tolerant Wheat Varieties Identifies Proteomic Signatures of Drought Adaptability

Alvarez, Sophie, Roy Choudhury, Swarup, Pandey, Sona

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 615 KB

english, 2014

15

Comprehensive Mapping of Protein N-Glycosylation in Human Liver by Combining Hydrophilic Interaction Chromatography and Hydrazide Chemistry

Zhu, Jun, Sun, Zhen, Cheng, Kai, Chen, Rui, Ye, Mingliang, Xu, Bo, Sun, Deguang, Wang, Liming, Liu, Jing, Wang, Fangjun, Zou, Hanfa

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.71 MB

english, 2014

16

Proteome and Allergenome of Asian Wasp, Vespa affinis , Venom and IgE Reactivity of the Venom Components

Sookrung, Nitat, Wong-din-dam, Siriporn, Tungtrongchitr, Anchalee, Reamtong, Onrapak, Indrawattana, Nitaya, Sakolvaree, Yuwaporn, Visitsunthorn, Nualanong, Manuyakorn, Wiparat, Chaicumpa, Wanpen

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.66 MB

english, 2014

17

Integrated Quantitative Analysis of Nitrogen Stress Response in Chlamydomonas reinhardtii Using Metabolite and Protein Profiling

Wase, Nishikant, Black, Paul N., Stanley, Bruce A., DiRusso, Concetta C.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.36 MB

english, 2014

18

Proteome-Driven Elucidation of Adaptive Responses to Combined Vitamin E and C Deficiency in Zebrafish

Motorykin, Ievgen, Traber, Maret G., Tanguay, Robert L., Maier, Claudia S.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.84 MB

english, 2014

19

IgG Fc N-Glycosylation in Guillain–Barré Syndrome Treated with Immunoglobulins

Fokkink, Willem-Jan R., Selman, Maurice H. J., Dortland, Juliette R., Durmuş, Büşra, Kuitwaard, Krista, Huizinga, Ruth, van Rijs, Wouter, Tio-Gillen, Anne P., van Doorn, Pieter A., Deelder, André M.,

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.13 MB

english, 2014

20

Total Plasma N-Glycome Changes during Pregnancy

Ruhaak, L. Renee, Uh, Hae-Won, Deelder, André M., Dolhain, Radboud E. J. M., Wuhrer, M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.35 MB

english, 2014

21

Comparative Proteomics Reveals That a Saxitoxin-Producing and a Nontoxic Strain of Anabaena circinalis Are Two Different Ecotypes

D’Agostino, Paul M., Song, Xiaomin, Neilan, Brett A., Moffitt, Michelle C.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

22

Rosiglitazone and Fenofibrate Exacerbate Liver Steatosis in a Mouse Model of Obesity and Hyperlipidemia. A Transcriptomic and Metabolomic Study

Rull, Anna, Geeraert, Benjamine, Aragonès, Gerard, Beltrán-Debón, Raúl, Rodríguez-Gallego, Esther, García-Heredia, Anabel, Pedro-Botet, Juan, Joven, Jorge, Holvoet, Paul, Camps, Jordi

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.00 MB

english, 2014

23

Comprehensive Analysis of Protein N-Glycosylation Sites by Combining Chemical Deglycosylation with LC–MS

Chen, Weixuan, Smeekens, Johanna M., Wu, Ronghu

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 968 KB

english, 2014

24

Untargeted Metabolomics as a Screening Tool for Estimating Compliance to a Dietary Pattern

Andersen, Maj-Britt S., Rinnan, Åsmund, Manach, Claudine, Poulsen, Sanne K., Pujos-Guillot, Estelle, Larsen, Thomas M., Astrup, Arne, Dragsted, Lars O.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.53 MB

english, 2014

25

Top-Down Proteomics of a Drop of Blood for Diabetes Monitoring

Mao, Pan, Wang, Daojing

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.01 MB

english, 2014

26

A Chromosome-Centric Analysis of Antibodies Directed toward the Human Proteome Using Antibodypedia

Alm, Tove, von Feilitzen, Kalle, Lundberg, Emma, Sivertsson, Åsa, Uhlén, Mathias

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.57 MB

english, 2014

27

Strigolactone-Regulated Proteins Revealed by iTRAQ-Based Quantitative Proteomics in Arabidopsis

Li, Zhou, Czarnecki, Olaf, Chourey, Karuna, Yang, Jun, Tuskan, Gerald A., Hurst, Gregory B., Pan, Chongle, Chen, Jin-Gui

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.55 MB

english, 2014

28

Novel Glycobiomarker for Ovarian Cancer That Detects Clear Cell Carcinoma

Sogabe, Maki, Nozaki, Hirofumi, Tanaka, Nana, Kubota, Tomomi, Kaji, Hiroyuki, Kuno, Atsushi, Togayachi, Akira, Gotoh, Masanori, Nakanishi, Hayao, Nakanishi, Toru, Mikami, Mikio, Suzuki, Nao, Kiguchi,

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.66 MB

english, 2014

29

Improved Intensity-Based Label-Free Quantification via Proximity-Based Intensity Normalization (PIN)

Van Riper, Susan K., de Jong, Ebbing P., Higgins, LeeAnn, Carlis, John V., Griffin, Timothy J.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.28 MB

english, 2014

30

Identification of Nitrated Immunoglobulin Variable Regions in the HIV-Infected Human Brain: Implications in HIV Infection and Immune Response

Uzasci, Lerna, Bianchet, Mario A., Cotter, Robert J., Nath, Avindra

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.80 MB

english, 2014

31

OMICS Studies: How about Metadata Checklist and Data Publications?

Kolker, Eugene, Stewart, Elizabeth

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 420 KB

english, 2014

32

Pregnancy-Induced Metabolic Phenotype Variations in Maternal Plasma

Luan, Hemi, Meng, Nan, Liu, Ping, Feng, Qiang, Lin, Shuhai, Fu, Jin, Davidson, Robert, Chen, Xiaomin, Rao, Weiqiao, Chen, Fang, Jiang, Hui, Xu, Xun, Cai, Zongwei, Wang, Jun

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

33

Application of a Glycoproteomics-Based Biomarker Development Method: Alteration in Glycan Structure on Colony Stimulating Factor 1 Receptor as a Possible Glycobiomarker Candidate for Evaluation of Liver Cirrhosis

Ocho, Makoto, Togayachi, Akira, Iio, Etsuko, Kaji, Hiroyuki, Kuno, Atsushi, Sogabe, Maki, Korenaga, Masaaki, Gotoh, Masanori, Tanaka, Yasuhito, Ikehara, Yuzuru, Mizokami, Masashi, Narimatsu, Hisashi

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

34

Senescing Human Bone-Marrow-Derived Clonal Mesenchymal Stem Cells Have Altered Lysophospholipid Composition and Functionality

Lee, Seul Ji, Yi, TacGhee, Ahn, Soo Hyun, Lim, Dong Kyu, Hong, Ji Yeon, Cho, Yun Kyoung, Lim, Johan, Song, Sun U., Kwon, Sung Won

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.63 MB

english, 2014

35

Identifying Proteins in Zebrafish Embryos Using Spectral Libraries Generated from Dissected Adult Organs and Tissues

van der Plas-Duivesteijn, Suzanne J., Mohammed, Yassene, Dalebout, Hans, Meijer, Annemarie, Botermans, Anouk, Hoogendijk, Jordy L., Henneman, Alex A., Deelder, André M., Spaink, Herman P., Palmblad, M

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.07 MB

english, 2014

36

Automated Data Extraction from In Situ Protein-Stable Isotope Probing Studies

Slysz, Gordon W., Steinke, Laurey, Ward, David M., Klatt, Christian G., Clauss, Therese R. W., Purvine, Samuel O., Payne, Samuel H., Anderson, Gordon A., Smith, Richard D., Lipton, Mary S.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.25 MB

english, 2014

37

Quantitative Glycoproteomics Analysis Reveals Changes in N-Glycosylation Level Associated with Pancreatic Ductal Adenocarcinoma

Pan, Sheng, Chen, Ru, Tamura, Yasuko, Crispin, David A., Lai, Lisa A., May, Damon H., McIntosh, Martin W., Goodlett, David R., Brentnall, Teresa A.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 5.37 MB

english, 2014

38

Quantification of the Proteins of the Bacterial Ribosome Using QconCAT Technology

Al-Majdoub, Zubida M., Carroll, Kathleen M., Gaskell, Simon J., Barber, Jill

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.35 MB

english, 2014

39

Compartment Proteomics Analysis of White Perch ( Morone americana ) Ovary Using Support Vector Machines

Schilling, Justin, Nepomuceno, Angelito, Schaff, Jennifer E., Muddiman, David C., Daniels, Harry V., Reading, Benjamin J.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 524 KB

english, 2014

40

Metabolomic Analysis of Siderophore Cheater Mutants Reveals Metabolic Costs of Expression in Uropathogenic Escherichia coli

Lv, Haitao, Hung, Chia S., Henderson, Jeffrey P.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.27 MB

english, 2014

41

Proteome Profiling of Mitotic Clonal Expansion during 3T3-L1 Adipocyte Differentiation Using iTRAQ-2DLC-MS/MS

Jiang, Yan, Guo, Liang, Xie, Li-Qi, Zhang, You-You, Liu, Xiao-Hui, Zhang, Yang, Zhu, Hao, Yang, Peng-Yuan, Lu, Hao-Jie, Tang, Qi-Qun

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.97 MB

english, 2014

42

Proteomic Analysis of the Secretome of Haloarchaeon Natrinema sp. J7–2

Feng, Jie, Wang, Jian, Zhang, Yaoxin, Du, Xin, Xu, Zhisheng, Wu, Yufeng, Tang, Wei, Li, Moran, Tang, Bing, Tang, Xiao-Feng

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

43

Newborn Mouse Lens Proteome and Its Alteration by Lysine 6 Mutant Ubiquitin

Shang, Fu, Wilmarth, Phillip A., Chang, Min-lee, Liu, Ke, David, Larry L., Caceres, Maria Andrea, Wawrousek, Eric, Taylor, Allen

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 5.42 MB

english, 2014

44

Bacterial Detection Using Unlabeled Phage Amplification and Mass Spectrometry through Structural and Nonstructural Phage Markers

Martelet, Armelle, L’Hostis, Guillaume, Tavares, Paulo, Brasilès, Sandrine, Fenaille, François, Rozand, Christine, Theretz, Alain, Gervasi, Gaspard, Tabet, Jean-Claude, Ezan, Eric, Junot, Christophe,

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.85 MB

english, 2014

45

Cd 2+ -Induced Alteration of the Global Proteome of Human Skin Fibroblast Cells

Prins, John M., Fu, Lijuan, Guo, Lei, Wang, Yinsheng

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.45 MB

english, 2014

46

Structural Plasticity of the Semliki Forest Virus Glycome upon Interspecies Transmission

Crispin, Max, Harvey, David J., Bitto, David, Bonomelli, Camille, Edgeworth, Matthew, Scrivens, James H., Huiskonen, Juha T., Bowden, Thomas A.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.24 MB

english, 2014

47

Feasibility Study on Measuring Selected Proteins in Malignant Melanoma Tissue by SRM Quantification

Welinder, Charlotte, Jönsson, Göran, Ingvar, Christian, Lundgren, Lotta, Baldetorp, Bo, Olsson, Håkan, Breslin, Thomas, Rezeli, Melinda, Jansson, Bo, Laurell, Thomas, Fehniger, Thomas E., Wieslander,

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.04 MB

english, 2014

48

Deep Proteome Mapping of Mouse Kidney Based on OFFGel Prefractionation Reveals Remarkable Protein Post- Translational Modifications

Magdeldin, Sameh, Yamamoto, Keiko, Yoshida, Yutaka, Xu, Bo, Zhang, Ying, Fujinaka, Hidehiko, Yaoita, Eishin, Yates, John R., Yamamoto, Tadashi

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.70 MB

english, 2014

49

Filter-Aided N -Glycan Separation (FANGS): A Convenient Sample Preparation Method for Mass Spectrometric N -Glycan Profiling

Abdul Rahman, Salina, Bergström, Ed, Watson, Christopher J., Wilson, Katherine M., Ashford, David A., Thomas, Jerry R., Ungar, Daniel, Thomas-Oates, Jane E.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.54 MB

english, 2014

50

Interference-Free Proteome Quantification with MS/MS-based Isobaric Isotopologue Detection

Bamberger, Casimir, Pankow, Sandra, Park, Sung Kyu Robin, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

51

N-Glycosylation Site Analysis of Proteins from Saccharomyces cerevisiae by Using Hydrophilic Interaction Liquid Chromatography-Based Enrichment, Parallel Deglycosylation, and Mass Spectrometry

Cao, Liwei, Yu, Long, Guo, Zhimou, Shen, Aijin, Guo, Yunü, Liang, Xinmiao

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.61 MB

english, 2014

52

Acute Phencyclidine Treatment Induces Extensive and Distinct Protein Phosphorylation in Rat Frontal Cortex

Palmowski, Pawel, Rogowska-Wrzesinska, Adelina, Williamson, James, Beck, Hans C., Mikkelsen, Jens D., Hansen, Henrik H., Jensen, Ole N.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.89 MB

english, 2014

53

Alterations in the Rat Serum Proteome Induced by Prepubertal Exposure to Bisphenol A and Genistein

Betancourt, Angela, Mobley, James A., Wang, Jun, Jenkins, Sarah, Chen, Dongquan, Kojima, Kyoko, Russo, Jose, Lamartiniere, Coral A.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.27 MB

english, 2014

54

A Turn-Key Approach for Large-Scale Identification of Complex Posttranslational Modifications

Wang, Jian, Anania, Veronica G., Knott, Jeff, Rush, John, Lill, Jennie R., Bourne, Philip E., Bandeira, Nuno

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.54 MB

english, 2014

55

General Statistical Framework for Quantitative Proteomics by Stable Isotope Labeling

Navarro, Pedro, Trevisan-Herraz, Marco, Bonzon-Kulichenko, Elena, Núñez, Estefanía, Martínez-Acedo, Pablo, Pérez-Hernández, Daniel, Jorge, Inmaculada, Mesa, Raquel, Calvo, Enrique, Carrascal, Montserr

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.55 MB

english, 2014

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