Volume 13; Issue 4

Journal of Proteome Research

Volume 13; Issue 4

1

Lifelong Exercise Training Modulates Cardiac Mitochondrial Phosphoproteome in Rats

Ferreira, Rita, Vitorino, Rui, Padrão, Ana Isabel, Espadas, Guadalupe, Mancuso, Francesco M., Moreira-Gonçalves, Daniel, Castro-Sousa, Gonçalo, Henriques-Coelho, Tiago, Oliveira, Paula A., Barros, Ant

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.63 MB

english, 2014

2

Identification of Virulence Factors in Leishmania infantum Strains by a Proteomic Approach

da Fonseca Pires, Simone, Fialho, Luiz Carlos, Silva, Soraia Oliveira, Melo, Maria Norma, de Souza, Carolina Carvalho, Tafuri, Wagner Luiz, Bruna Romero, Oscar, de Andrade, Hélida Monteiro

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.48 MB

english, 2014

3

Comparative Proteomic Analysis of Histone Post-translational Modifications upon Ischemia/Reperfusion-Induced Retinal Injury

Zhao, Xiaolu, Sidoli, Simone, Wang, Leilei, Wang, Wenjun, Guo, Lin, Jensen, Ole N., Zheng, Ling

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.71 MB

english, 2014

4

Enhanced FASP (eFASP) to Increase Proteome Coverage and Sample Recovery for Quantitative Proteomic Experiments

Erde, Jonathan, Loo, Rachel R. Ogorzalek, Loo, Joseph A.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.27 MB

english, 2014

5

Analysis of Glycan Variation on Glycoproteins from Serum by the Reverse Lectin-Based ELISA Assay

Wu, Jing, Zhu, Jianhui, Yin, Haidi, Buckanovich, Ronald J., Lubman, David M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.29 MB

english, 2014

6

Signatures for Mass Spectrometry Data Quality

Amidan, Brett G., Orton, Daniel J., LaMarche, Brian L., Monroe, Matthew E., Moore, Ronald J., Venzin, Alexander M., Smith, Richard D., Sego, Landon H., Tardiff, Mark F., Payne, Samuel H.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1016 KB

english, 2014

7

p63 Isoforms Regulate Metabolism of Cancer Stem Cells

D’Aguanno, Simona, Barcaroli, Daniela, Rossi, Claudia, Zucchelli, Mirco, Ciavardelli, Domenico, Cortese, Claudio, De Cola, Antonella, Volpe, Silvia, D’Agostino, Daniela, Todaro, Matilde, Stassi, Giorg

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.18 MB

english, 2014

8

Shotgun Proteomic Analysis Unveils Survival and Detoxification Strategies by Caulobacter crescentus during Exposure to Uranium, Chromium, and Cadmium

Yung, Mimi C., Ma, Jincai, Salemi, Michelle R., Phinney, Brett S., Bowman, Grant R., Jiao, Yongqin

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.51 MB

english, 2014

9

High-Affinity Recombinant Antibody Fragments (Fabs) Can Be Applied in Peptide Enrichment Immuno-MRM Assays

Whiteaker, Jeffrey R., Zhao, Lei, Frisch, Christian, Ylera, Francisco, Harth, Stefan, Knappik, Achim, Paulovich, Amanda G.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.64 MB

english, 2014

10

Identification of Novel PAMP-Triggered Phosphorylation and Dephosphorylation Events in Arabidopsis thaliana by Quantitative Phosphoproteomic Analysis

Rayapuram, Naganand, Bonhomme, Ludovic, Bigeard, Jean, Haddadou, Kahina, Przybylski, Cédric, Hirt, Heribert, Pflieger, Delphine

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.87 MB

english, 2014

11

Global Protein Expression Profiling of Zebrafish Organs Based on in Vivo Incorporation of Stable Isotopes

Nolte, Hendrik, Konzer, Anne, Ruhs, Aaron, Jungblut, Benno, Braun, Thomas, Krüger, Marcus

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.25 MB

english, 2014

12

Secretomic Survey of Trichoderma harzianum Grown on Plant Biomass Substrates

Gómez-Mendoza, Diana Paola, Junqueira, Magno, do Vale, Luis Henrique Ferreira, Domont, Gilberto Barbosa, Ferreira Filho, Edivaldo Ximenes, Sousa, Marcelo Valle de, Ricart, Carlos André Ornelas

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 7.81 MB

english, 2014

13

Quantitative Proteomics by SWATH-MS Reveals Altered Expression of Nucleic Acid Binding and Regulatory Proteins in HIV-1-Infected Macrophages

Haverland, Nicole A., Fox, Howard S., Ciborowski, Pawel

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 8.12 MB

english, 2014

14

Quantification of the Brain Proteome in Alzheimer’s Disease Using Multiplexed Mass Spectrometry

Musunuri, Sravani, Wetterhall, Magnus, Ingelsson, Martin, Lannfelt, Lars, Artemenko, Konstantin, Bergquist, Jonas, Kultima, Kim, Shevchenko, Ganna

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.38 MB

english, 2014

15

Human SOD1-G93A Specific Distribution Evidenced in Murine Brain of a Transgenic Model for Amyotrophic Lateral Sclerosis by MALDI Imaging Mass Spectrometry

Acquadro, Elena, Caron, Ilaria, Tortarolo, Massimo, Bucci, Enrico M., Bendotti, Caterina, Corpillo, Davide

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.53 MB

english, 2014

16

Quantitative Label-Free Phosphoproteomics of Six Different Life Stages of the Late Blight Pathogen Phytophthora infestans Reveals Abundant Phosphorylation of Members of the CRN Effector Family

Resjö, Svante, Ali, Ashfaq, Meijer, Harold J. G., Seidl, Michael F., Snel, Berend, Sandin, Marianne, Levander, Fredrik, Govers, Francine, Andreasson, Erik

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.98 MB

english, 2014

17

Deciphering the Role of the ADAM17-Dependent Secretome in Cell Signaling

Kawahara, Rebeca, Lima, Renato Niyama, Domingues, Romênia R., Pauletti, Bianca Alves, Meirelles, Gabriela V., Assis, Michelle, Figueira, Ana Carolina Migliorini, Leme, Adriana Franco Paes

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.90 MB

english, 2014

18

Glycoprotein Biomarker Panel for Pancreatic Cancer Discovered by Quantitative Proteomics Analysis

Nie, Song, Lo, Andy, Wu, Jing, Zhu, Jianhui, Tan, Zhijing, Simeone, Diane M., Anderson, Michelle A., Shedden, Kerby A., Ruffin, Mack T., Lubman, David M.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.20 MB

english, 2014

19

Empirical Multidimensional Space for Scoring Peptide Spectrum Matches in Shotgun Proteomics

Ivanov, Mark V., Levitsky, Lev I., Lobas, Anna A., Panic, Tanja, Laskay, Ünige A., Mitulovic, Goran, Schmid, Rainer, Pridatchenko, Marina L., Tsybin, Yury O., Gorshkov, Mikhail V.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.35 MB

english, 2014

20

Holistic View on the Extended Substrate Specificities of Orthologous Granzymes

Plasman, Kim, Maurer-Stroh, Sebastian, Gevaert, Kris, Van Damme, Petra

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 5.30 MB

english, 2014

21

RNA- and Antibody-Based Profiling of the Human Proteome with Focus on Chromosome 19

Stadler, Charlotte, Fagerberg, Linn, Sivertsson, Åsa, Oksvold, Per, Zwahlen, Martin, Hallström, Björn M., Lundberg, Emma, Uhlén, Mathias

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 7.52 MB

english, 2014

22

iTRAQ Protein Profile Analysis of Tomato Green-ripe Mutant Reveals New Aspects Critical for Fruit Ripening

Pan, Xiaoqi, Zhu, Benzhong, Zhu, Hongliang, Chen, Yuexi, Tian, Huiqin, Luo, Yunbo, Fu, Daqi

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.11 MB

english, 2014

23

Monitoring M-Proteins in Patients with Multiple Myeloma Using Heavy-Chain Variable Region Clonotypic Peptides and LC–MS/MS

Barnidge, David R., Tschumper, Renee C., Theis, Jason D., Snyder, Melissa R., Jelinek, Diane F., Katzmann, Jerry A., Dispenzieri, Angela, Murray, David L.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.78 MB

english, 2014

24

Assessment of MS/MS Search Algorithms with Parent-Protein Profiling

Lin, Miin S., Cherny, Justin J., Fournier, Claire T., Roth, Samuel J., Krizanc, Danny, Weir, Michael P.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 5.69 MB

english, 2014

25

Cryoconservation of Peptide Extracts from Trypsin Digestion of Proteins for Proteomic Analysis in a Hospital Biobank Facility

Mateos, Jesús, Pintor-Iglesias, Alejandra, Fernández-Puente, Patricia, García-Camba, Marta, Ruiz-Romero, Cristina, Doménech, Nieves, Blanco, Francisco J.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 377 KB

english, 2014

26

Systematic Assessment of Survey Scan and MS2-Based Abundance Strategies for Label-Free Quantitative Proteomics Using High-Resolution MS Data

Tu, Chengjian, Li, Jun, Sheng, Quanhu, Zhang, Ming, Qu, Jun

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.83 MB

english, 2014

27

Confirmation of Protein Biomarkers of Corticosteroids Treatment in Veal Calves Sampled under Field Conditions

Stella, Roberto, Arrigoni, Giorgio, Biancotto, Giancarlo, Krogh, Morten, Vascellari, Marta, Lega, Francesca, Pozza, Giandomenico, Angeletti, Roberto, Andrighetto, Igino, James, Peter

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.82 MB

english, 2014

28

LC–MS Based Cleavage Site Profiling of the Proteases ADAM10 and ADAM17 Using Proteome-Derived Peptide Libraries

Tucher, Joanna, Linke, Dennis, Koudelka, Tomas, Cassidy, Liam, Tredup, Claudia, Wichert, Rielana, Pietrzik, Claus, Becker-Pauly, Christoph, Tholey, Andreas

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.99 MB

english, 2014

29

Cross-Correlation of Spectral Count Ranking to Validate Quantitative Proteome Measurements

Kannaste, Olli, Suomi, Tomi, Salmi, Jussi, Uusipaikka, Esa, Nevalainen, Olli, Corthals, Garry L.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.85 MB

english, 2014

30

LC–MS Proteomics Analysis of the Insulin/IGF-1-Deficient Caenorhabditis elegans daf-2(e1370) Mutant Reveals Extensive Restructuring of Intermediary Metabolism

Depuydt, Geert, Xie, Fang, Petyuk, Vladislav A., Smolders, Arne, Brewer, Heather M., Camp, David G., Smith, Richard D., Braeckman, Bart P.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 5.67 MB

english, 2014

31

Screening of Missing Proteins in the Human Liver Proteome by Improved MRM-Approach-Based Targeted Proteomics

Chen, Chen, Liu, Xiaohui, Zheng, Weimin, Zhang, Lei, Yao, Jun, Yang, Pengyuan

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.37 MB

english, 2014

32

Intelligent Data Acquisition Blends Targeted and Discovery Methods

Bailey, Derek J., McDevitt, Molly T., Westphall, Michael S., Pagliarini, David J., Coon, Joshua J.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.67 MB

english, 2014

33

Proteomic Analysis of Cross Protection Provided between Cold and Osmotic Stress in Listeria monocytogenes

Pittman, Joseph R., Buntyn, Joe O., Posadas, Gabriel, Nanduri, Bindu, Pendarvis, Ken, Donaldson, Janet R.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 574 KB

english, 2014

34

Altered Tissue Metabolites Correlate with Microbial Dysbiosis in Colorectal Adenomas

Nugent, Julia L., McCoy, Amber N., Addamo, Cassandra J., Jia, Wei, Sandler, Robert S., Keku, Temitope O.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.43 MB

english, 2014

35

Study of Induction Chemotherapy Efficacy in Oral Squamous Cell Carcinoma Using Pseudotargeted Metabolomics

Ye, Guozhu, Liu, Ying, Yin, Peiyuan, Zeng, Zhongda, Huang, Qiang, Kong, Hongwei, Lu, Xin, Zhong, Laiping, Zhang, Zhiyuan, Xu, Guowang

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.52 MB

english, 2014

36

Genetic Manipulation of Isoprene Emissions in Poplar Plants Remodels the Chloroplast Proteome

Velikova, Violeta, Ghirardo, Andrea, Vanzo, Elisa, Merl, Juliane, Hauck, Stefanie M., Schnitzler, Jörg-Peter

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.66 MB

english, 2014

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